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Cow genome map

           
Conread name:
           
Pig1-75G13
        

               
Conread position:
               
1-136
               

               
Cow position:
               
chr1:80423541-80423678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr1:26984203-26984056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr1:41022607-41022466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
111, 63
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr1:32217429-32217266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 63
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr1:46245545-46245716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr1:61134606-61134436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr1:69411504-69411684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 31
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr1:63461069-63460889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr1:98556927-98557108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 147
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:51860373-51860552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
110, 63
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:20537393-20537213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
111, 57
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:40303739-40303559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
112, 63
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:24530689-24530482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
111, 58
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:55753028-55753236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
111, 68
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr1:6731370-6731158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
111, 201
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:38706662-38706878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:72422215-72422432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
65, 132
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:41027263-41027043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
111, 65
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:95835604-95835829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:54267749-54267970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 74
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:92524208-92523979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
64, 219
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr1:81858710-81858941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
65, 60
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr1:1496336-1496577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:60045178-60044939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 88
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:73020471-73020709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr1:97717385-97717628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:81481194-81481440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
111, 65
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:77739915-77739658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
71, 92
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:79004167-79003916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 135
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:88360076-88359823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 215
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:101507541-101507300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
115, 42
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:64113609-64113856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
108, 57
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:46143276-46143526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr1:45223767-45223515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
115, 66
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr1:95072534-95072265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
52, 200
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr1:2972111-2971840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 220
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:49824874-49825151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 222
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr1:100474430-100474143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 220
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr1:90904566-90904847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
111, 201
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr1:628159-627867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 155
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr1:38419217-38418934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
66, 20
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr1:42541782-42541496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 13
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr1:71350533-71350823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
65, 212
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr1:81477672-81477970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 231
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr1:17056181-17055892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 63
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:4391077-4391390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
70, 164
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:82513161-82513463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:91651157-91651470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
70, 226
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr1:31794815-31795114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 149
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:98060250-98059937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
94, 65
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:82880822-82880531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
111, 57
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr1:22943837-22944140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
79, 152
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr1:102305956-102306259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
94, 88
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr1:47288435-47288123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
55, 82
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:3607986-3607688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 54
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:71665743-71666066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 96
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr1:79640098-79640418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
111, 223
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:68710475-68710136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 160
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:71399485-71399149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 205
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:78079914-78079597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:43855480-43855164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr1:42482391-42482062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 118
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr1:47886289-47886629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 162
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr1:86056887-86057199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
111, 62
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr1:8128788-8129112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
117, 21
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr1:97090508-97090182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
100, 11
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr1:17196434-17196777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
62, 218
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr1:22526065-22525730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
115, 57
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr1:24777793-24778134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 122
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr1:65318768-65318426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 92
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr1:23186611-23186948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
111, 62
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr1:22192961-22192611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 243
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr1:76740481-76740839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 179
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr1:64572705-64572356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
111, 212
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr1:38754108-38753754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr1:96081669-96081320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr1:86110554-86110898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:87095020-87095398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 276
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr1:55428762-55429128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 220
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr1:484272-484639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
56, 150
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr1:101866309-101866669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
111, 36
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr1:20667559-20667921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr1:68763493-68763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 96
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr1:33206683-33207061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 176
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr1:54156543-54156927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 145
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr1:98619393-98619013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 187
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr1:5597021-5597397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
110, 146
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr1:24542379-24542780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
25, 20
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr1:28563370-28563767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 153
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr1:42175919-42175517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
65, 196
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr1:74955841-74956238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 52
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr1:8287439-8287831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr1:4691779-4691364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 146
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr1:55705056-55705483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr1:81515430-81515010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
65, 222
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr1:89381465-89381049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 188
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr1:64803906-64804338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 217
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr1:10655668-10655245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
52, 141
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr1:15334079-15333650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 63
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr1:55230164-55229750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr1:44507159-44506728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 66
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr1:71078771-71079193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 82
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr1:51446073-51445638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 24
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr1:56618465-56618920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
319, 112
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr1:87072885-87072461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 88
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr1:10633231-10632805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 21
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr1:70538797-70538353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 58
               

               
Conread position:
               
1-452
               

               
Cow position:
               
chr1:6166423-6165999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
109, 63
               

               
Conread position:
               
1-452
               

               
Cow position:
               
chr1:6941657-6941214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 68
               

               
Conread position:
               
1-452
               

               
Cow position:
               
chr1:65103820-65103383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 127
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr1:68817610-68818050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 11
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr1:34856434-34856885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 219
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr1:45555556-45555106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr1:59519102-59518646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 66
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr1:61885103-61884659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 72
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr1:68826733-68827161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
1-458
               

               
Cow position:
               
chr1:3923613-3924051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 54
               

               
Conread position:
               
1-458
               

               
Cow position:
               
chr1:79164891-79165350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 89
               

               
Conread position:
               
1-459
               

               
Cow position:
               
chr1:16766895-16767344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 77
               

               
Conread position:
               
1-459
               

               
Cow position:
               
chr1:71119712-71119251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 91
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr1:54478507-54478061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 57
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr1:82337589-82338046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
1-465
               

               
Cow position:
               
chr1:78811229-78810770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 189
               

               
Conread position:
               
1-470
               

               
Cow position:
               
chr1:61741773-61742238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
1-476
               

               
Cow position:
               
chr1:38277835-38278324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 92
               

               
Conread position:
               
1-476
               

               
Cow position:
               
chr1:99609558-99609090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 145
               

               
Conread position:
               
1-479
               

               
Cow position:
               
chr1:40600216-40599773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr1:52435466-52434986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 219
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr1:97755692-97755244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 73
               

               
Conread position:
               
1-488
               

               
Cow position:
               
chr1:25383860-25383374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 185
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr1:24132872-24133352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 146
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr1:82936414-82936879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 11
               

               
Conread position:
               
1-498
               

               
Cow position:
               
chr1:87888581-87888108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 83
               

               
Conread position:
               
1-499
               

               
Cow position:
               
chr1:72011631-72012106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 60
               

               
Conread position:
               
1-500
               

               
Cow position:
               
chr1:91065966-91066448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 57
               

               
Conread position:
               
1-500
               

               
Cow position:
               
chr1:100552157-100551662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 58
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr1:15547656-15547168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 65
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr1:31934695-31934212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 64
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr1:35162596-35162103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 38
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr1:41182027-41181540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 57
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr1:42256314-42256811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 20
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr1:81290695-81290220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:1878214-1877724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 193
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:11771892-11772383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 198
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:12222413-12222907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 157
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:12464474-12464955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:20000565-20001053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
114, 56
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:23488312-23488812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 210
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:26895621-26896126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 273
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:34160019-34159533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 57
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:43352462-43352951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 159
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:48105234-48105738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 153
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:53623145-53622666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 83
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:54206628-54207117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 68
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:54258760-54258270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 126
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:55357098-55357582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 164
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:57575573-57576064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 209
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:61391604-61392095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 57
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:63434607-63435105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 219
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:72034737-72035231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 20
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:77620740-77620244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 117
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:79591295-79590798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 120
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:81228145-81228633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 13
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:81568838-81569338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 211
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:84811750-84812252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 73
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:86113205-86113715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 267
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:90621315-90621796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:96365840-96365372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
386, 20
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:100324567-100325039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 77
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:101714307-101713813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 65
               

               
Conread position:
               
2-206
               

               
Cow position:
               
chr1:45315441-45315652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
2-246
               

               
Cow position:
               
chr1:500366-500121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 220
               

               
Conread position:
               
2-277
               

               
Cow position:
               
chr1:73457904-73458175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 172
               

               
Conread position:
               
2-334
               

               
Cow position:
               
chr1:89449088-89448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 43
               

               
Conread position:
               
2-348
               

               
Cow position:
               
chr1:86682377-86682715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
64, 73
               

               
Conread position:
               
2-369
               

               
Cow position:
               
chr1:16060818-16061188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
115, 62
               

               
Conread position:
               
2-407
               

               
Cow position:
               
chr1:49082936-49082515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 218
               

               
Conread position:
               
2-422
               

               
Cow position:
               
chr1:34771309-34771726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
2-425
               

               
Cow position:
               
chr1:26201424-26200995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
2-446
               

               
Cow position:
               
chr1:102105927-102105488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 99
               

               
Conread position:
               
2-450
               

               
Cow position:
               
chr1:78857136-78857572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 214
               

               
Conread position:
               
2-456
               

               
Cow position:
               
chr1:100762264-100761835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
110, 64
               

               
Conread position:
               
2-461
               

               
Cow position:
               
chr1:196816-197263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 84
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr1:97954293-97954731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
114, 57
               

               
Conread position:
               
2-502
               

               
Cow position:
               
chr1:42887090-42887563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 64
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr1:32014380-32014205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 63
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:93590401-93590607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr1:81391111-81390853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 110
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chr1:78066354-78066605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
96, 66
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chr1:35671725-35671466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 56
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr1:22824098-22823805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
58, 156
               

               
Conread position:
               
3-309
               

               
Cow position:
               
chr1:78794047-78794338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
109, 63
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chr1:47790479-47790787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
53, 63
               

               
Conread position:
               
3-320
               

               
Cow position:
               
chr1:84103869-84104178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
63, 165
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr1:42868761-42869068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
112, 18
               

               
Conread position:
               
3-329
               

               
Cow position:
               
chr1:78838976-78838665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
113, 54
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr1:2975800-2976136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
58, 156
               

               
Conread position:
               
3-343
               

               
Cow position:
               
chr1:91023279-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr1:101835005-101834673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr1:62519555-62519205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
62, 155
               

               
Conread position:
               
3-392
               

               
Cow position:
               
chr1:5858483-5858883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
44, 77
               

               
Conread position:
               
3-431
               

               
Cow position:
               
chr1:6304688-6305099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 53
               

               
Conread position:
               
3-431
               

               
Cow position:
               
chr1:43357817-43358245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 90
               

               
Conread position:
               
3-443
               

               
Cow position:
               
chr1:56477774-56477352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 55
               

               
Conread position:
               
3-444
               

               
Cow position:
               
chr1:70435175-70434748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 91
               

               
Conread position:
               
3-448
               

               
Cow position:
               
chr1:93528883-93528442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 55
               

               
Conread position:
               
3-451
               

               
Cow position:
               
chr1:74083999-74084440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 81
               

               
Conread position:
               
3-452
               

               
Cow position:
               
chr1:75745049-75744608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
3-461
               

               
Cow position:
               
chr1:37321821-37322267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr1:19481911-19482339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
422, 19
               

               
Conread position:
               
3-474
               

               
Cow position:
               
chr1:21954038-21954493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 62
               

               
Conread position:
               
3-500
               

               
Cow position:
               
chr1:68276603-68276107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 149
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr1:3324063-3323552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 102
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr1:18936648-18937135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr1:22729243-22728746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 6
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr1:41697243-41696759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 76
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr1:48444002-48444480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 209
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr1:53374616-53374132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr1:66138511-66138018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 81
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr1:68845317-68845782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 61
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr1:69539874-69539395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 64
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr1:102266081-102266573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 71
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr1:89157942-89158202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
108, 46
               

               
Conread position:
               
4-380
               

               
Cow position:
               
chr1:89388531-89388151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
108, 224
               

               
Conread position:
               
4-389
               

               
Cow position:
               
chr1:71228283-71227887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 146
               

               
Conread position:
               
4-461
               

               
Cow position:
               
chr1:64302062-64302493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
112, 18
               

               
Conread position:
               
4-502
               

               
Cow position:
               
chr1:62964456-62963981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 168
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr1:72105587-72105286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
110, 13
               

               
Conread position:
               
5-393
               

               
Cow position:
               
chr1:83072629-83072250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 148
               

               
Conread position:
               
5-452
               

               
Cow position:
               
chr1:6959066-6958627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
5-502
               

               
Cow position:
               
chr1:54199207-54199682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 30
               

               
Conread position:
               
5-502
               

               
Cow position:
               
chr1:72068644-72069129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 212
               

               
Conread position:
               
6-348
               

               
Cow position:
               
chr1:87198007-87197675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
10, 242
               

               
Conread position:
               
6-397
               

               
Cow position:
               
chr1:72104040-72103649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 185
               

               
Conread position:
               
6-473
               

               
Cow position:
               
chr1:45019620-45020077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
6-502
               

               
Cow position:
               
chr1:63241162-63240650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
8-176
               

               
Cow position:
               
chr1:81471535-81471369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
104, 56
               

               
Conread position:
               
9-321
               

               
Cow position:
               
chr1:24908859-24909178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
67, 182
               

               
Conread position:
               
9-362
               

               
Cow position:
               
chr1:95558223-95557870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 216
               

               
Conread position:
               
9-395
               

               
Cow position:
               
chr1:5423550-5423930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 91
               

               
Conread position:
               
9-500
               

               
Cow position:
               
chr1:61005377-61005862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 131
               

               
Conread position:
               
10-322
               

               
Cow position:
               
chr1:101714898-101715213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 127
               

               
Conread position:
               
10-331
               

               
Cow position:
               
chr1:648510-648188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
57, 209
               

               
Conread position:
               
10-337
               

               
Cow position:
               
chr1:3419989-3419661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 224
               

               
Conread position:
               
10-339
               

               
Cow position:
               
chr1:96304790-96305119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
102, 54
               

               
Conread position:
               
10-356
               

               
Cow position:
               
chr1:14308847-14309198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
44, 215
               

               
Conread position:
               
10-388
               

               
Cow position:
               
chr1:42398014-42398385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
100, 57
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr1:63595869-63596363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 182
               

               
Conread position:
               
11-463
               

               
Cow position:
               
chr1:90864110-90864563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
14-345
               

               
Cow position:
               
chr1:91811960-91811638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 148
               

               
Conread position:
               
14-470
               

               
Cow position:
               
chr1:13637487-13637937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
18-459
               

               
Cow position:
               
chr1:68618761-68619196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 50
               

               
Conread position:
               
19-469
               

               
Cow position:
               
chr1:49433088-49433535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 174
               

               
Conread position:
               
19-502
               

               
Cow position:
               
chr1:31348262-31348734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 174
               

               
Conread position:
               
19-502
               

               
Cow position:
               
chr1:52496946-52496474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 124
               

               
Conread position:
               
21-461
               

               
Cow position:
               
chr1:48581301-48580869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 67
               

               
Conread position:
               
22-502
               

               
Cow position:
               
chr1:22827316-22826865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 41
               

               
Conread position:
               
22-502
               

               
Cow position:
               
chr1:76019527-76019982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
25-443
               

               
Cow position:
               
chr1:97611497-97611896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
73, 33
               

               
Conread position:
               
25-451
               

               
Cow position:
               
chr1:24534094-24534494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
25-502
               

               
Cow position:
               
chr1:53521081-53520610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 195
               

               
Conread position:
               
25-502
               

               
Cow position:
               
chr1:69694831-69695308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
25-502
               

               
Cow position:
               
chr1:73960860-73960398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 43
               

               
Conread position:
               
27-463
               

               
Cow position:
               
chr1:52487813-52488221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 80
               

               
Conread position:
               
36-404
               

               
Cow position:
               
chr1:86073749-86073385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
36-502
               

               
Cow position:
               
chr1:20002072-20002554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 127
               

               
Conread position:
               
37-392
               

               
Cow position:
               
chr1:32001167-32001513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
37-439
               

               
Cow position:
               
chr1:40530946-40531348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 140
               

               
Conread position:
               
40-359
               

               
Cow position:
               
chr1:93554989-93554680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 178
               

               
Conread position:
               
43-290
               

               
Cow position:
               
chr1:71796167-71796408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
44-502
               

               
Cow position:
               
chr1:89341833-89342291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 141
               

               
Conread position:
               
53-259
               

               
Cow position:
               
chr1:98576185-98575981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
63, 152
               

               
Conread position:
               
53-272
               

               
Cow position:
               
chr1:8347261-8347047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
59, 155
               

               
Conread position:
               
53-309
               

               
Cow position:
               
chr1:45553105-45553357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 94
               

               
Conread position:
               
53-448
               

               
Cow position:
               
chr1:36932293-36931911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 119
               

               
Conread position:
               
53-499
               

               
Cow position:
               
chr1:89741857-89742311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 161
               

               
Conread position:
               
53-500
               

               
Cow position:
               
chr1:98360266-98360714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 36
               

               
Conread position:
               
53-502
               

               
Cow position:
               
chr1:90868309-90868740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
400, 36
               

               
Conread position:
               
54-347
               

               
Cow position:
               
chr1:57420599-57420879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
248, 61
               

               
Conread position:
               
63-316
               

               
Cow position:
               
chr1:3352570-3352814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
8, 108
               

               
Conread position:
               
68-442
               

               
Cow position:
               
chr1:25281532-25281918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 155
               

               
Conread position:
               
69-266
               

               
Cow position:
               
chr1:58037140-58036948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
43, 89
               

               
Conread position:
               
69-305
               

               
Cow position:
               
chr1:81580299-81580066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
69-309
               

               
Cow position:
               
chr1:98512048-98511815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
69-312
               

               
Cow position:
               
chr1:7023243-7023004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
69-323
               

               
Cow position:
               
chr1:100569278-100569024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 148
               

               
Conread position:
               
69-345
               

               
Cow position:
               
chr1:23512538-23512804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
69-348
               

               
Cow position:
               
chr1:41115597-41115867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
52, 83
               

               
Conread position:
               
69-359
               

               
Cow position:
               
chr1:97696866-97696577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
46, 90
               

               
Conread position:
               
69-398
               

               
Cow position:
               
chr1:94261657-94261349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
69-412
               

               
Cow position:
               
chr1:97779113-97778783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 52
               

               
Conread position:
               
69-428
               

               
Cow position:
               
chr1:52052595-52052932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
47, 146
               

               
Conread position:
               
69-431
               

               
Cow position:
               
chr1:78809998-78809652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 110
               

               
Conread position:
               
69-472
               

               
Cow position:
               
chr1:4032754-4032364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 152
               

               
Conread position:
               
69-485
               

               
Cow position:
               
chr1:4027985-4027576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
69-502
               

               
Cow position:
               
chr1:56229361-56228950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
69-502
               

               
Cow position:
               
chr1:69264930-69264520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
69-502
               

               
Cow position:
               
chr1:95177059-95176633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
70-488
               

               
Cow position:
               
chr1:49796115-49795712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
74-251
               

               
Cow position:
               
chr1:95974517-95974338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
74-334
               

               
Cow position:
               
chr1:85549961-85550216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
74-348
               

               
Cow position:
               
chr1:42545662-42545936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
42, 192
               

               
Conread position:
               
74-369
               

               
Cow position:
               
chr1:101632220-101632508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
38, 75
               

               
Conread position:
               
74-384
               

               
Cow position:
               
chr1:75933383-75933088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 80
               

               
Conread position:
               
74-448
               

               
Cow position:
               
chr1:42138976-42138617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
5, 142
               

               
Conread position:
               
74-452
               

               
Cow position:
               
chr1:72141689-72141312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
173, 23
               

               
Conread position:
               
74-452
               

               
Cow position:
               
chr1:93810546-93810191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
41, 95
               

               
Conread position:
               
74-458
               

               
Cow position:
               
chr1:4291281-4290900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 96
               

               
Conread position:
               
74-498
               

               
Cow position:
               
chr1:44125520-44125947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
74-502
               

               
Cow position:
               
chr1:98551836-98551418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
75-482
               

               
Cow position:
               
chr1:72285952-72286331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
41, 142
               

               
Conread position:
               
75-502
               

               
Cow position:
               
chr1:43822515-43822075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 74
               

               
Conread position:
               
76-502
               

               
Cow position:
               
chr1:37309404-37309812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 136
               

               
Conread position:
               
77-310
               

               
Cow position:
               
chr1:61542805-61543033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
80-358
               

               
Cow position:
               
chr1:85647671-85647944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
80-370
               

               
Cow position:
               
chr1:12978793-12978506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 145
               

               
Conread position:
               
80-501
               

               
Cow position:
               
chr1:45288759-45289172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 136
               

               
Conread position:
               
80-502
               

               
Cow position:
               
chr1:64250941-64251367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
81-384
               

               
Cow position:
               
chr1:77683462-77683169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 114
               

               
Conread position:
               
81-452
               

               
Cow position:
               
chr1:85162437-85162799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 131
               

               
Conread position:
               
81-500
               

               
Cow position:
               
chr1:89350075-89349677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 133
               

               
Conread position:
               
81-502
               

               
Cow position:
               
chr1:7350658-7350236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 160
               

               
Conread position:
               
81-502
               

               
Cow position:
               
chr1:26702097-26702499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 8
               

               
Conread position:
               
81-502
               

               
Cow position:
               
chr1:81355592-81356005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 145
               

               
Conread position:
               
82-307
               

               
Cow position:
               
chr1:87937006-87936788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
84-405
               

               
Cow position:
               
chr1:75142104-75141801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 130
               

               
Conread position:
               
84-502
               

               
Cow position:
               
chr1:82884287-82884687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
94-346
               

               
Cow position:
               
chr1:43703506-43703257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
94-377
               

               
Cow position:
               
chr1:95179051-95178773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 127
               

               
Conread position:
               
94-452
               

               
Cow position:
               
chr1:81868632-81868979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 58
               

               
Conread position:
               
95-423
               

               
Cow position:
               
chr1:7186884-7186564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 120
               

               
Conread position:
               
95-502
               

               
Cow position:
               
chr1:96478796-96478379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
99-405
               

               
Cow position:
               
chr1:4414117-4414413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
99-446
               

               
Cow position:
               
chr1:51531843-51531527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
99-448
               

               
Cow position:
               
chr1:81563837-81563485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
99-452
               

               
Cow position:
               
chr1:74947026-74947369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
132, 115
               

               
Conread position:
               
99-456
               

               
Cow position:
               
chr1:6939544-6939895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
103-405
               

               
Cow position:
               
chr1:101867438-101867150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 107
               

               
Conread position:
               
103-450
               

               
Cow position:
               
chr1:68951713-68951382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
103-502
               

               
Cow position:
               
chr1:85597026-85596644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
105-500
               

               
Cow position:
               
chr1:71257380-71257783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 164
               

               
Conread position:
               
111-432
               

               
Cow position:
               
chr1:3429430-3429741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
121, 103
               

               
Conread position:
               
111-449
               

               
Cow position:
               
chr1:89485659-89485342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
52, 107
               

               
Conread position:
               
114-322
               

               
Cow position:
               
chr1:45285739-45285532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
103, 146
               

               
Conread position:
               
115-335
               

               
Cow position:
               
chr1:87440542-87440329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
115-502
               

               
Cow position:
               
chr1:4374262-4374640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 74
               

               
Conread position:
               
117-288
               

               
Cow position:
               
chr1:55088982-55089145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
118-432
               

               
Cow position:
               
chr1:79278375-79278674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
120-402
               

               
Cow position:
               
chr1:6788213-6788493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 94
               

               
Conread position:
               
127-461
               

               
Cow position:
               
chr1:57639452-57639781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
129, 88
               

               
Conread position:
               
132-313
               

               
Cow position:
               
chr1:36276551-36276375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
173, 117
               

               
Conread position:
               
132-413
               

               
Cow position:
               
chr1:98311128-98310847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
26, 19
               

               
Conread position:
               
132-482
               

               
Cow position:
               
chr1:60907435-60907079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 83
               

               
Conread position:
               
140-500
               

               
Cow position:
               
chr1:79001887-79002253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
148-359
               

               
Cow position:
               
chr1:25387095-25386888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
156, 35
               

               
Conread position:
               
151-430
               

               
Cow position:
               
chr1:62920204-62919946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
155-502
               

               
Cow position:
               
chr1:76222653-76222993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 60
               

               
Conread position:
               
156-398
               

               
Cow position:
               
chr1:81471167-81470930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
156-502
               

               
Cow position:
               
chr1:99136396-99136732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
157-437
               

               
Cow position:
               
chr1:100512642-100512359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
157-452
               

               
Cow position:
               
chr1:1916194-1916488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
157-492
               

               
Cow position:
               
chr1:90641070-90640733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 107
               

               
Conread position:
               
157-500
               

               
Cow position:
               
chr1:44769076-44769409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
162-356
               

               
Cow position:
               
chr1:51684835-51684643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 64
               

               
Conread position:
               
162-378
               

               
Cow position:
               
chr1:24445599-24445807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
162-421
               

               
Cow position:
               
chr1:52956286-52956038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
162-452
               

               
Cow position:
               
chr1:11770264-11770545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
141, 53
               

               
Conread position:
               
162-461
               

               
Cow position:
               
chr1:57297510-57297235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 52
               

               
Conread position:
               
162-500
               

               
Cow position:
               
chr1:71045783-71045451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 51
               

               
Conread position:
               
162-501
               

               
Cow position:
               
chr1:8532188-8532515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
162-502
               

               
Cow position:
               
chr1:47009061-47008730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 53
               

               
Conread position:
               
162-502
               

               
Cow position:
               
chr1:55163947-55163623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
164-502
               

               
Cow position:
               
chr1:88652657-88652329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
170-392
               

               
Cow position:
               
chr1:82443434-82443649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 49
               

               
Conread position:
               
170-452
               

               
Cow position:
               
chr1:56748621-56748338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
170-461
               

               
Cow position:
               
chr1:78794716-78794996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
35, 54
               

               
Conread position:
               
170-472
               

               
Cow position:
               
chr1:84240912-84240628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
170-494
               

               
Cow position:
               
chr1:81472891-81472585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
137, 36
               

               
Conread position:
               
170-501
               

               
Cow position:
               
chr1:33811950-33811633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
170-502
               

               
Cow position:
               
chr1:68782616-68782961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
78, 92
               

               
Conread position:
               
171-409
               

               
Cow position:
               
chr1:95654694-95654925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
171-431
               

               
Cow position:
               
chr1:43447809-43448055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
251, 42
               

               
Conread position:
               
171-440
               

               
Cow position:
               
chr1:73761336-73761592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
171-446
               

               
Cow position:
               
chr1:63905455-63905720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
171-452
               

               
Cow position:
               
chr1:5162025-5162305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
60, 24
               

               
Conread position:
               
171-501
               

               
Cow position:
               
chr1:666385-666059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 48
               

               
Conread position:
               
171-501
               

               
Cow position:
               
chr1:78783567-78783245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 46
               

               
Conread position:
               
171-502
               

               
Cow position:
               
chr1:22448562-22448886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 93
               

               
Conread position:
               
172-415
               

               
Cow position:
               
chr1:20544316-20544077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
172-485
               

               
Cow position:
               
chr1:34000927-34000620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 11
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr1:91039154-91039461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
130, 48
               

               
Conread position:
               
173-450
               

               
Cow position:
               
chr1:94404231-94403966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
175-502
               

               
Cow position:
               
chr1:80870130-80869804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 14
               

               
Conread position:
               
177-405
               

               
Cow position:
               
chr1:32013967-32013751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
179-419
               

               
Cow position:
               
chr1:45673727-45673492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
181-501
               

               
Cow position:
               
chr1:5872958-5873274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 54
               

               
Conread position:
               
183-502
               

               
Cow position:
               
chr1:82861787-82861471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
193-502
               

               
Cow position:
               
chr1:4589472-4589783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
115, 68
               

               
Conread position:
               
197-453
               

               
Cow position:
               
chr1:14379539-14379783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
199-398
               

               
Cow position:
               
chr1:51654404-51654212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
112, 16
               

               
Conread position:
               
202-502
               

               
Cow position:
               
chr1:81674057-81673762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
106, 53
               

               
Conread position:
               
205-448
               

               
Cow position:
               
chr1:81343786-81343548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
177, 10
               

               
Conread position:
               
205-455
               

               
Cow position:
               
chr1:77658057-77657811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 58
               

               
Conread position:
               
205-457
               

               
Cow position:
               
chr1:87216446-87216203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
217, 13
               

               
Conread position:
               
206-334
               

               
Cow position:
               
chr1:73536729-73536598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
206-441
               

               
Cow position:
               
chr1:20288108-20287876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
6, 58
               

               
Conread position:
               
206-452
               

               
Cow position:
               
chr1:29900986-29901209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
207-474
               

               
Cow position:
               
chr1:20422217-20422483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
75, 92
               

               
Conread position:
               
209-425
               

               
Cow position:
               
chr1:4294042-4293837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
209-452
               

               
Cow position:
               
chr1:3776633-3776866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
210-342
               

               
Cow position:
               
chr1:90595568-90595699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 51
               

               
Conread position:
               
210-451
               

               
Cow position:
               
chr1:75967414-75967185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
211-447
               

               
Cow position:
               
chr1:3137911-3137686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
94, 9
               

               
Conread position:
               
211-452
               

               
Cow position:
               
chr1:80555210-80555431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 50
               

               
Conread position:
               
211-498
               

               
Cow position:
               
chr1:82504960-82504669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 52
               

               
Conread position:
               
211-502
               

               
Cow position:
               
chr1:85361845-85361553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
212-417
               

               
Cow position:
               
chr1:89083093-89082889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
185, 51
               

               
Conread position:
               
212-452
               

               
Cow position:
               
chr1:56658016-56657789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
6, 50
               

               
Conread position:
               
212-500
               

               
Cow position:
               
chr1:46218555-46218281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
252, 52
               

               
Conread position:
               
213-438
               

               
Cow position:
               
chr1:24597639-24597414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
214-448
               

               
Cow position:
               
chr1:55146784-55146553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
214-499
               

               
Cow position:
               
chr1:100770768-100771033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
214-500
               

               
Cow position:
               
chr1:44165064-44164780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
214-500
               

               
Cow position:
               
chr1:79663688-79663964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
215-396
               

               
Cow position:
               
chr1:89437960-89438132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
215-405
               

               
Cow position:
               
chr1:47883835-47884038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
216-354
               

               
Cow position:
               
chr1:65909507-65909369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
7, 46
               

               
Conread position:
               
216-455
               

               
Cow position:
               
chr1:24655941-24655705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
216-502
               

               
Cow position:
               
chr1:15311848-15311566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 43
               

               
Conread position:
               
219-456
               

               
Cow position:
               
chr1:102825842-102826069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
220-454
               

               
Cow position:
               
chr1:21835918-21835694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
220-454
               

               
Cow position:
               
chr1:57395956-57396183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
89, 12
               

               
Conread position:
               
220-502
               

               
Cow position:
               
chr1:81179997-81180287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
221-462
               

               
Cow position:
               
chr1:52506581-52506806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
224-495
               

               
Cow position:
               
chr1:26688504-26688773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
236, 39
               

               
Conread position:
               
224-498
               

               
Cow position:
               
chr1:95215210-95215476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 40
               

               
Conread position:
               
224-502
               

               
Cow position:
               
chr1:731971-732227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
229-451
               

               
Cow position:
               
chr1:89395567-89395340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
75, 34
               

               
Conread position:
               
229-456
               

               
Cow position:
               
chr1:97806754-97806536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
238-441
               

               
Cow position:
               
chr1:30504428-30504230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
245-456
               

               
Cow position:
               
chr1:3757911-3757696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
12, 104
               

               
Conread position:
               
248-454
               

               
Cow position:
               
chr1:64160287-64160087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
253-502
               

               
Cow position:
               
chr1:19442788-19442537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
262-448
               

               
Cow position:
               
chr1:74013325-74013515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
262-475
               

               
Cow position:
               
chr1:32631401-32631195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
40, 87
               

               
Conread position:
               
264-502
               

               
Cow position:
               
chr1:43893857-43893626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 37
               

               
Conread position:
               
278-502
               

               
Cow position:
               
chr1:64928683-64928907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
278-502
               

               
Cow position:
               
chr1:88678529-88678303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
26, 40
               
Show alignments to all cow chromosomes.