Cow genome map
| Conread name: | Pig1-79O09 |
| Conread position: | 1-361 |
| Cow position: | chr1:67285611-67285253 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 100 |
| Conread position: | 1-369 |
| Cow position: | chr1:93222738-93223096 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 165 |
| Conread position: | 1-497 |
| Cow position: | chr1:40906726-40906255 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 53 |
| Conread position: | 1-519 |
| Cow position: | chr1:77122449-77122971 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 41 |
| Conread position: | 1-542 |
| Cow position: | chr1:72062846-72063370 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 121 |
| Conread position: | 1-542 |
| Cow position: | chr1:72134003-72133457 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 135 |
| Conread position: | 2-545 |
| Cow position: | chr1:89478145-89477615 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 375 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 50, 86 |
| Conread position: | 5-546 |
| Cow position: | chr1:30033378-30032857 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 21 |
| Conread position: | 45-455 |
| Cow position: | chr1:52234177-52234592 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 45-519 |
| Cow position: | chr1:13419073-13418602 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 303 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 50-341 |
| Cow position: | chr1:97122978-97122687 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 45, 97 |
| Conread position: | 50-542 |
| Cow position: | chr1:55324415-55324921 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 45 |
| Conread position: | 50-542 |
| Cow position: | chr1:89900555-89901052 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 54-531 |
| Cow position: | chr1:79885382-79885866 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 54-542 |
| Cow position: | chr1:72655867-72655375 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 54-542 |
| Cow position: | chr1:88634518-88634029 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 54-546 |
| Cow position: | chr1:28721941-28721447 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 60-542 |
| Cow position: | chr1:45096726-45096252 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 35 |
| Conread position: | 66-542 |
| Cow position: | chr1:89741150-89741615 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 93-455 |
| Cow position: | chr1:4086840-4087202 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 119, 145 |
| Conread position: | 93-542 |
| Cow position: | chr1:59672192-59671739 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 300 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 107, 146 |
| Conread position: | 93-542 |
| Cow position: | chr1:89811003-89811431 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 298 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 119, 30 |
| Conread position: | 93-545 |
| Cow position: | chr1:18407058-18407505 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 40 |
| Conread position: | 94-460 |
| Cow position: | chr1:40307401-40307032 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 116, 22 |
| Conread position: | 94-528 |
| Cow position: | chr1:28802328-28802768 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 134 |
| Conread position: | 95-527 |
| Cow position: | chr1:13644824-13644386 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 100-519 |
| Cow position: | chr1:76705492-76705916 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 47 |
| Conread position: | 100-535 |
| Cow position: | chr1:95078760-95079188 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 217, 113 |
| Conread position: | 102-545 |
| Cow position: | chr1:54367307-54367752 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 294 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 111, 140 |
| Conread position: | 105-491 |
| Cow position: | chr1:101859345-101859734 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 107, 18 |
| Conread position: | 105-517 |
| Cow position: | chr1:72118093-72117681 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 35 |
| Conread position: | 108-542 |
| Cow position: | chr1:40514465-40514903 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 112-378 |
| Cow position: | chr1:101148708-101148440 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 112-491 |
| Cow position: | chr1:101148083-101147699 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 118-500 |
| Cow position: | chr1:82403277-82403660 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 118-525 |
| Cow position: | chr1:21223205-21223610 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 198, 83 |
| Conread position: | 119-397 |
| Cow position: | chr1:82927480-82927752 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 93, 130 |
| Conread position: | 119-528 |
| Cow position: | chr1:99346089-99345690 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 277 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 5, 62 |
| Conread position: | 137-432 |
| Cow position: | chr1:86362086-86361792 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 52 |
| Conread position: | 142-543 |
| Cow position: | chr1:82347301-82347696 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 98 |
| Conread position: | 143-541 |
| Cow position: | chr1:38412676-38412274 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 70, 37 |
| Conread position: | 147-500 |
| Cow position: | chr1:52322506-52322150 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 147-545 |
| Cow position: | chr1:31593107-31592719 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 59, 96 |
| Conread position: | 180-424 |
| Cow position: | chr1:4266703-4266456 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 32, 48 |
| Conread position: | 180-542 |
| Cow position: | chr1:61165781-61165434 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 182-448 |
| Cow position: | chr1:21522662-21522393 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 54 |
| Conread position: | 183-542 |
| Cow position: | chr1:31345645-31346010 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 29, 154 |
| Conread position: | 188-509 |
| Cow position: | chr1:42289436-42289109 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 193-531 |
| Cow position: | chr1:89841635-89841292 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 196-452 |
| Cow position: | chr1:13572299-13572043 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 210-545 |
| Cow position: | chr1:51651062-51650723 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 12 |
| Conread position: | 246-542 |
| Cow position: | chr1:6945773-6945471 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 253-542 |
| Cow position: | chr1:97070283-97070579 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 265-542 |
| Cow position: | chr1:67901066-67901344 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 280-528 |
| Cow position: | chr1:69535161-69534909 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 37, 237 |
| Conread position: | 316-545 |
| Cow position: | chr1:38388934-38389160 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 23 |
| Conread position: | 328-527 |
| Cow position: | chr1:39876806-39877009 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 52, 189 |
Show alignments to all cow chromosomes.