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Cow genome map

           
Conread name:
           
Pig1-82B13
        

               
Conread position:
               
108-450
               

               
Cow position:
               
chr29:7109606-7109275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
140-445
               

               
Cow position:
               
chr29:19756674-19756380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
139, 10
               

               
Conread position:
               
152-447
               

               
Cow position:
               
chr29:16290954-16290668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
153-344
               

               
Cow position:
               
chr29:31942628-31942430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
153-482
               

               
Cow position:
               
chr29:15738100-15738432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
68, 47
               

               
Conread position:
               
154-384
               

               
Cow position:
               
chr29:4440973-4441201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 102
               

               
Conread position:
               
155-465
               

               
Cow position:
               
chr29:23220266-23220575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
157-464
               

               
Cow position:
               
chr29:32656662-32656359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
32, 96
               

               
Conread position:
               
157-485
               

               
Cow position:
               
chr29:20167646-20167329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
209, 24
               

               
Conread position:
               
159-482
               

               
Cow position:
               
chr29:4520555-4520245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
5, 41
               

               
Conread position:
               
160-482
               

               
Cow position:
               
chr29:17297359-17297044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 29
               

               
Conread position:
               
161-496
               

               
Cow position:
               
chr29:15947391-15947065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
162-480
               

               
Cow position:
               
chr29:27668433-27668751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 136
               

               
Conread position:
               
165-482
               

               
Cow position:
               
chr29:23698187-23697889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
125, 48
               

               
Conread position:
               
166-377
               

               
Cow position:
               
chr29:9800875-9800661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chr29:11527555-11527808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
92, 10
               

               
Conread position:
               
166-457
               

               
Cow position:
               
chr29:17462564-17462851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
166-465
               

               
Cow position:
               
chr29:22028745-22029031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
202, 86
               

               
Conread position:
               
166-480
               

               
Cow position:
               
chr29:28196804-28197093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
238, 48
               

               
Conread position:
               
167-367
               

               
Cow position:
               
chr29:26631263-26631063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
120, 22
               

               
Conread position:
               
167-377
               

               
Cow position:
               
chr29:25288706-25288912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
119, 21
               

               
Conread position:
               
167-390
               

               
Cow position:
               
chr29:18579604-18579836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 6
               

               
Conread position:
               
167-435
               

               
Cow position:
               
chr29:22534176-22533912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
199, 9
               

               
Conread position:
               
167-456
               

               
Cow position:
               
chr29:27911805-27911527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
167-477
               

               
Cow position:
               
chr29:20770558-20770258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
167-482
               

               
Cow position:
               
chr29:23874675-23874369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 9
               

               
Conread position:
               
167-482
               

               
Cow position:
               
chr29:27859004-27858704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 47
               

               
Conread position:
               
167-482
               

               
Cow position:
               
chr29:41531064-41530757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 9
               

               
Conread position:
               
168-374
               

               
Cow position:
               
chr29:25432670-25432470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
6, 62
               

               
Conread position:
               
168-378
               

               
Cow position:
               
chr29:8798799-8799005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
198, 21
               

               
Conread position:
               
168-417
               

               
Cow position:
               
chr29:31934590-31934350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
195, 82
               

               
Conread position:
               
168-423
               

               
Cow position:
               
chr29:1933355-1933607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
168-423
               

               
Cow position:
               
chr29:9310818-9310565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
168-442
               

               
Cow position:
               
chr29:29923363-29923627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
255, 27
               

               
Conread position:
               
168-465
               

               
Cow position:
               
chr29:16196070-16195769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
21, 213
               

               
Conread position:
               
168-472
               

               
Cow position:
               
chr29:22518906-22519210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
168-482
               

               
Cow position:
               
chr29:5046867-5046562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
201, 46
               

               
Conread position:
               
168-482
               

               
Cow position:
               
chr29:5520269-5520595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
13, 85
               

               
Conread position:
               
168-491
               

               
Cow position:
               
chr29:16657905-16657592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
124, 100
               

               
Conread position:
               
169-350
               

               
Cow position:
               
chr29:25981792-25981963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
160, 7
               

               
Conread position:
               
169-359
               

               
Cow position:
               
chr29:2219600-2219417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
169-384
               

               
Cow position:
               
chr29:26211267-26211056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
169-401
               

               
Cow position:
               
chr29:28420970-28420743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
197, 81
               

               
Conread position:
               
169-403
               

               
Cow position:
               
chr29:16200263-16200493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
197, 81
               

               
Conread position:
               
169-409
               

               
Cow position:
               
chr29:30294657-30294886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
169-410
               

               
Cow position:
               
chr29:22729777-22729545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
231, 12
               

               
Conread position:
               
169-420
               

               
Cow position:
               
chr29:39038055-39038301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
13, 115
               

               
Conread position:
               
169-425
               

               
Cow position:
               
chr29:25874256-25874509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
200, 107
               

               
Conread position:
               
169-429
               

               
Cow position:
               
chr29:4070833-4070586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
247, 106
               

               
Conread position:
               
169-467
               

               
Cow position:
               
chr29:43183104-43183385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
169-468
               

               
Cow position:
               
chr29:28840390-28840077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
23, 270
               

               
Conread position:
               
169-476
               

               
Cow position:
               
chr29:11647330-11647005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 242
               

               
Conread position:
               
169-481
               

               
Cow position:
               
chr29:35292301-35291999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
7, 83
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr29:4479954-4480262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
112, 45
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr29:5830803-5831126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 84
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr29:12025268-12025560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr29:12680371-12680068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 83
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr29:22613634-22613336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
199, 45
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr29:25333229-25333552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
75, 194
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr29:26270281-26269976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 64
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr29:28674488-28674797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 85
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr29:35458555-35458868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr29:40117777-40117478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
198, 20
               

               
Conread position:
               
169-484
               

               
Cow position:
               
chr29:8669568-8669274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
28, 32
               

               
Conread position:
               
169-491
               

               
Cow position:
               
chr29:32799491-32799806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
170-425
               

               
Cow position:
               
chr29:8163616-8163864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
197, 19
               

               
Conread position:
               
170-481
               

               
Cow position:
               
chr29:4121069-4120759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
170-481
               

               
Cow position:
               
chr29:13373533-13373210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
94, 261
               

               
Conread position:
               
170-482
               

               
Cow position:
               
chr29:5176179-5175867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
183, 19
               

               
Conread position:
               
170-491
               

               
Cow position:
               
chr29:6337862-6337563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
197, 24
               

               
Conread position:
               
170-491
               

               
Cow position:
               
chr29:34744418-34744714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
171-353
               

               
Cow position:
               
chr29:16438561-16438743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
115, 100
               

               
Conread position:
               
171-454
               

               
Cow position:
               
chr29:501411-501137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
171-455
               

               
Cow position:
               
chr29:5994879-5995164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
172-367
               

               
Cow position:
               
chr29:16735436-16735246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
172-428
               

               
Cow position:
               
chr29:31982030-31981789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
197, 19
               

               
Conread position:
               
172-481
               

               
Cow position:
               
chr29:26017290-26017591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
195, 78
               

               
Conread position:
               
172-491
               

               
Cow position:
               
chr29:3685311-3685610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
169, 96
               

               
Conread position:
               
173-346
               

               
Cow position:
               
chr29:36546573-36546739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
173-425
               

               
Cow position:
               
chr29:31651611-31651372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
175, 92
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr29:11397704-11398014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
81, 239
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr29:13028659-13028347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 193
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr29:25092312-25092022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
239, 16
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr29:42363809-42364104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
174-355
               

               
Cow position:
               
chr29:43311335-43311514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr29:27042480-27042292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
174-479
               

               
Cow position:
               
chr29:1022501-1022208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 17
               

               
Conread position:
               
174-486
               

               
Cow position:
               
chr29:19250551-19250254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
112, 170
               

               
Conread position:
               
175-357
               

               
Cow position:
               
chr29:33143150-33143322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
175-367
               

               
Cow position:
               
chr29:35189815-35189629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
175-369
               

               
Cow position:
               
chr29:7040663-7040853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
157, 12
               

               
Conread position:
               
175-455
               

               
Cow position:
               
chr29:42630324-42630058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
188, 74
               

               
Conread position:
               
175-482
               

               
Cow position:
               
chr29:732818-732527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
175-482
               

               
Cow position:
               
chr29:25475138-25474830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
114, 23
               

               
Conread position:
               
175-485
               

               
Cow position:
               
chr29:36531071-36530774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
193, 12
               

               
Conread position:
               
175-487
               

               
Cow position:
               
chr29:8926243-8926558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
77, 39
               

               
Conread position:
               
175-494
               

               
Cow position:
               
chr29:7310870-7310581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
194, 75
               

               
Conread position:
               
176-373
               

               
Cow position:
               
chr29:22576973-22577164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
176-456
               

               
Cow position:
               
chr29:27926979-27926710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
176-481
               

               
Cow position:
               
chr29:16609955-16609653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
190, 20
               

               
Conread position:
               
176-482
               

               
Cow position:
               
chr29:4624793-4625087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
95, 13
               

               
Conread position:
               
176-482
               

               
Cow position:
               
chr29:22175896-22175597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 58
               

               
Conread position:
               
176-482
               

               
Cow position:
               
chr29:23845045-23844745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
190, 13
               

               
Conread position:
               
176-482
               

               
Cow position:
               
chr29:37618514-37618216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
187, 78
               

               
Conread position:
               
176-482
               

               
Cow position:
               
chr29:42771859-42771559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
91, 153
               

               
Conread position:
               
176-484
               

               
Cow position:
               
chr29:29942520-29942823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
193, 56
               

               
Conread position:
               
176-492
               

               
Cow position:
               
chr29:30366849-30367158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
87, 52
               

               
Conread position:
               
176-495
               

               
Cow position:
               
chr29:25814630-25814940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
190, 13
               

               
Conread position:
               
177-415
               

               
Cow position:
               
chr29:39329380-39329630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
177-424
               

               
Cow position:
               
chr29:11042648-11042395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
83, 37
               

               
Conread position:
               
177-476
               

               
Cow position:
               
chr29:34297365-34297655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
177-479
               

               
Cow position:
               
chr29:25737215-25737505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
190, 18
               

               
Conread position:
               
177-482
               

               
Cow position:
               
chr29:2262776-2263087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 182
               

               
Conread position:
               
177-482
               

               
Cow position:
               
chr29:11434317-11434033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
192, 48
               

               
Conread position:
               
177-482
               

               
Cow position:
               
chr29:36220747-36220438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
59, 12
               

               
Conread position:
               
177-483
               

               
Cow position:
               
chr29:43099543-43099838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
13, 71
               

               
Conread position:
               
178-335
               

               
Cow position:
               
chr29:27882046-27881896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
178-374
               

               
Cow position:
               
chr29:19061558-19061758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
178-375
               

               
Cow position:
               
chr29:37990783-37990985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
178-476
               

               
Cow position:
               
chr29:749687-749994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
42, 156
               

               
Conread position:
               
178-482
               

               
Cow position:
               
chr29:21666290-21665997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
186, 93
               

               
Conread position:
               
178-482
               

               
Cow position:
               
chr29:40891503-40891786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
179-426
               

               
Cow position:
               
chr29:22734904-22735143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
189, 10
               

               
Conread position:
               
180-392
               

               
Cow position:
               
chr29:15796686-15796482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
188, 34
               

               
Conread position:
               
180-479
               

               
Cow position:
               
chr29:40583987-40583706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
112, 34
               

               
Conread position:
               
180-482
               

               
Cow position:
               
chr29:26477746-26477449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
186, 14
               

               
Conread position:
               
181-361
               

               
Cow position:
               
chr29:40763495-40763666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
181-366
               

               
Cow position:
               
chr29:35070872-35071061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
100, 33
               

               
Conread position:
               
181-373
               

               
Cow position:
               
chr29:28949186-28948989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
73, 176
               

               
Conread position:
               
181-396
               

               
Cow position:
               
chr29:19125531-19125314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
106, 66
               

               
Conread position:
               
181-399
               

               
Cow position:
               
chr29:19363909-19363700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
187, 71
               

               
Conread position:
               
181-406
               

               
Cow position:
               
chr29:9378836-9378619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
185, 69
               

               
Conread position:
               
181-422
               

               
Cow position:
               
chr29:36210351-36210110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
44, 84
               

               
Conread position:
               
181-462
               

               
Cow position:
               
chr29:18449937-18450205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
186, 69
               

               
Conread position:
               
181-472
               

               
Cow position:
               
chr29:29057381-29057099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
181-477
               

               
Cow position:
               
chr29:2623279-2623567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
186, 100
               

               
Conread position:
               
181-477
               

               
Cow position:
               
chr29:19762464-19762185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
187, 47
               

               
Conread position:
               
181-478
               

               
Cow position:
               
chr29:19949506-19949215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
181-479
               

               
Cow position:
               
chr29:26779078-26778793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 72
               

               
Conread position:
               
181-481
               

               
Cow position:
               
chr29:9709894-9709606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
109, 72
               

               
Conread position:
               
181-481
               

               
Cow position:
               
chr29:40298795-40299101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
69, 249
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr29:11562827-11562525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
103, 50
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr29:29769153-29769441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
109, 69
               

               
Conread position:
               
182-401
               

               
Cow position:
               
chr29:36781110-36781317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
186, 70
               

               
Conread position:
               
182-409
               

               
Cow position:
               
chr29:42444799-42444586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
182-432
               

               
Cow position:
               
chr29:31200474-31200213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
92, 9
               

               
Conread position:
               
182-440
               

               
Cow position:
               
chr29:35259181-35258933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
184, 31
               

               
Conread position:
               
182-454
               

               
Cow position:
               
chr29:31944066-31943802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
140, 10
               

               
Conread position:
               
182-456
               

               
Cow position:
               
chr29:26540340-26540610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
186, 70
               

               
Conread position:
               
182-482
               

               
Cow position:
               
chr29:18878281-18878586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
182-491
               

               
Cow position:
               
chr29:38581192-38580879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 71
               

               
Conread position:
               
182-494
               

               
Cow position:
               
chr29:14501795-14501490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
184, 70
               

               
Conread position:
               
183-355
               

               
Cow position:
               
chr29:34274175-34274345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
42, 96
               

               
Conread position:
               
183-359
               

               
Cow position:
               
chr29:27997050-27997220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
183-421
               

               
Cow position:
               
chr29:24187864-24188097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
186, 69
               

               
Conread position:
               
183-458
               

               
Cow position:
               
chr29:44139046-44139312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
185, 69
               

               
Conread position:
               
183-470
               

               
Cow position:
               
chr29:21645516-21645246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
183-482
               

               
Cow position:
               
chr29:2056259-2055968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
31, 68
               

               
Conread position:
               
183-482
               

               
Cow position:
               
chr29:5063342-5063057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
184, 67
               

               
Conread position:
               
183-482
               

               
Cow position:
               
chr29:22068542-22068836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
183, 67
               

               
Conread position:
               
183-482
               

               
Cow position:
               
chr29:28813773-28814069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
44, 48
               

               
Conread position:
               
183-482
               

               
Cow position:
               
chr29:30227081-30227363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
183-482
               

               
Cow position:
               
chr29:31929185-31928891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 63
               

               
Conread position:
               
183-482
               

               
Cow position:
               
chr29:35084024-35084312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
183, 42
               

               
Conread position:
               
183-482
               

               
Cow position:
               
chr29:44378208-44378505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
78, 164
               

               
Conread position:
               
183-485
               

               
Cow position:
               
chr29:1325645-1325347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
109, 54
               

               
Conread position:
               
183-489
               

               
Cow position:
               
chr29:21196453-21196749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
180, 80
               

               
Conread position:
               
183-494
               

               
Cow position:
               
chr29:11916020-11915717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
184-362
               

               
Cow position:
               
chr29:27961766-27961940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
184-374
               

               
Cow position:
               
chr29:36697955-36697771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
184, 41
               

               
Conread position:
               
184-377
               

               
Cow position:
               
chr29:40350883-40351064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
184, 91
               

               
Conread position:
               
184-384
               

               
Cow position:
               
chr29:2730082-2730282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
5, 178
               

               
Conread position:
               
184-384
               

               
Cow position:
               
chr29:19187224-19187030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
182, 68
               

               
Conread position:
               
184-390
               

               
Cow position:
               
chr29:629735-629536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
182, 37
               

               
Conread position:
               
184-392
               

               
Cow position:
               
chr29:15798149-15797948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
184, 30
               

               
Conread position:
               
184-420
               

               
Cow position:
               
chr29:396600-396381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
184-422
               

               
Cow position:
               
chr29:17110151-17109926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
184, 29
               

               
Conread position:
               
184-429
               

               
Cow position:
               
chr29:36357326-36357087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
182, 68
               

               
Conread position:
               
184-456
               

               
Cow position:
               
chr29:31092647-31092384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
267, 64
               

               
Conread position:
               
184-457
               

               
Cow position:
               
chr29:23155433-23155161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
85, 184
               

               
Conread position:
               
184-475
               

               
Cow position:
               
chr29:22690425-22690143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
182, 83
               

               
Conread position:
               
184-482
               

               
Cow position:
               
chr29:20626768-20626486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 69
               

               
Conread position:
               
184-482
               

               
Cow position:
               
chr29:31489522-31489231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
179, 87
               

               
Conread position:
               
184-482
               

               
Cow position:
               
chr29:40097179-40096873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
79, 177
               

               
Conread position:
               
184-484
               

               
Cow position:
               
chr29:5408944-5409233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
184, 68
               

               
Conread position:
               
184-491
               

               
Cow position:
               
chr29:11705331-11705025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
92, 148
               

               
Conread position:
               
185-374
               

               
Cow position:
               
chr29:35737120-35737313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
98, 29
               

               
Conread position:
               
185-420
               

               
Cow position:
               
chr29:33321546-33321318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
227, 67
               

               
Conread position:
               
185-434
               

               
Cow position:
               
chr29:28066677-28066445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
110, 29
               

               
Conread position:
               
185-482
               

               
Cow position:
               
chr29:17222613-17222323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
112, 51
               

               
Conread position:
               
186-451
               

               
Cow position:
               
chr29:5769990-5769735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
186-482
               

               
Cow position:
               
chr29:34358783-34359070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
104, 18
               

               
Conread position:
               
187-361
               

               
Cow position:
               
chr29:17663563-17663733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
187-383
               

               
Cow position:
               
chr29:8634847-8634659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
179, 50
               

               
Conread position:
               
187-383
               

               
Cow position:
               
chr29:22335030-22335224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
187-426
               

               
Cow position:
               
chr29:29324226-29324458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
181, 9
               

               
Conread position:
               
187-476
               

               
Cow position:
               
chr29:40874223-40873924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
85, 52
               

               
Conread position:
               
187-482
               

               
Cow position:
               
chr29:24952882-24952598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 88
               

               
Conread position:
               
188-355
               

               
Cow position:
               
chr29:42405143-42404981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
188-360
               

               
Cow position:
               
chr29:30743516-30743687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 138
               

               
Conread position:
               
188-385
               

               
Cow position:
               
chr29:26539425-26539238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
178, 63
               

               
Conread position:
               
188-482
               

               
Cow position:
               
chr29:34745467-34745751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
188-483
               

               
Cow position:
               
chr29:6844416-6844719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
64, 215
               

               
Conread position:
               
188-485
               

               
Cow position:
               
chr29:40994685-40994983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
93, 164
               

               
Conread position:
               
188-494
               

               
Cow position:
               
chr29:5893040-5892741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
178, 26
               

               
Conread position:
               
189-384
               

               
Cow position:
               
chr29:26411272-26411465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
189-420
               

               
Cow position:
               
chr29:38858019-38858245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
168, 43
               

               
Conread position:
               
189-425
               

               
Cow position:
               
chr29:30681510-30681746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
101, 89
               

               
Conread position:
               
189-430
               

               
Cow position:
               
chr29:27524641-27524877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
189-478
               

               
Cow position:
               
chr29:12783762-12784042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
88, 139
               

               
Conread position:
               
189-482
               

               
Cow position:
               
chr29:30441132-30440841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
174, 63
               

               
Conread position:
               
189-495
               

               
Cow position:
               
chr29:7955795-7956088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
177, 81
               

               
Conread position:
               
190-415
               

               
Cow position:
               
chr29:1011401-1011607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
178, 70
               

               
Conread position:
               
190-482
               

               
Cow position:
               
chr29:22714518-22714814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
108, 198
               

               
Conread position:
               
191-406
               

               
Cow position:
               
chr29:935117-934907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
192-482
               

               
Cow position:
               
chr29:21443151-21443431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
174, 22
               

               
Conread position:
               
194-401
               

               
Cow position:
               
chr29:4053156-4053353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
172, 58
               

               
Conread position:
               
195-482
               

               
Cow position:
               
chr29:24046185-24045903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
171, 57
               

               
Conread position:
               
198-458
               

               
Cow position:
               
chr29:36632676-36632928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
168, 52
               

               
Conread position:
               
198-462
               

               
Cow position:
               
chr29:40633837-40633576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
77, 94
               

               
Conread position:
               
199-376
               

               
Cow position:
               
chr29:33393871-33393690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
202-383
               

               
Cow position:
               
chr29:11116483-11116656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
164, 69
               

               
Conread position:
               
203-471
               

               
Cow position:
               
chr29:23825033-23825299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
165, 49
               

               
Conread position:
               
214-405
               

               
Cow position:
               
chr29:24051210-24051398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
152, 64
               

               
Conread position:
               
214-427
               

               
Cow position:
               
chr29:34688023-34687796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
215-482
               

               
Cow position:
               
chr29:13639197-13639460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 6
               

               
Conread position:
               
215-494
               

               
Cow position:
               
chr29:45005458-45005732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
152, 24
               

               
Conread position:
               
243-482
               

               
Cow position:
               
chr29:24252378-24252148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
184, 47
               

               
Conread position:
               
244-418
               

               
Cow position:
               
chr29:28979354-28979529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
13, 122
               

               
Conread position:
               
244-420
               

               
Cow position:
               
chr29:4423291-4423471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
245-414
               

               
Cow position:
               
chr29:16365738-16365914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
37, 174
               

               
Conread position:
               
247-482
               

               
Cow position:
               
chr29:28775320-28775547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 117
               

               
Conread position:
               
251-482
               

               
Cow position:
               
chr29:25088883-25088662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 104
               

               
Conread position:
               
252-374
               

               
Cow position:
               
chr29:17022290-17022164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
252-391
               

               
Cow position:
               
chr29:703074-703216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 51
               

               
Conread position:
               
252-475
               

               
Cow position:
               
chr29:26319305-26319092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 65
               

               
Conread position:
               
252-479
               

               
Cow position:
               
chr29:10156166-10156392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
28, 79
               

               
Conread position:
               
252-482
               

               
Cow position:
               
chr29:13372801-13372575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
252-482
               

               
Cow position:
               
chr29:16309876-16309652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
114, 7
               

               
Conread position:
               
252-486
               

               
Cow position:
               
chr29:13867069-13867306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
25, 172
               

               
Conread position:
               
253-376
               

               
Cow position:
               
chr29:43096904-43096783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
253-466
               

               
Cow position:
               
chr29:5210630-5210412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
255-482
               

               
Cow position:
               
chr29:32290747-32290518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
40, 169
               

               
Conread position:
               
258-482
               

               
Cow position:
               
chr29:465265-465488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
29, 159
               

               
Conread position:
               
260-495
               

               
Cow position:
               
chr29:23243746-23243982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
26, 142
               

               
Conread position:
               
263-425
               

               
Cow position:
               
chr29:39508380-39508227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
19, 55
               

               
Conread position:
               
263-458
               

               
Cow position:
               
chr29:12310133-12309943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
103, 17
               

               
Conread position:
               
263-465
               

               
Cow position:
               
chr29:7103689-7103482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
20, 187
               

               
Conread position:
               
263-481
               

               
Cow position:
               
chr29:7624307-7624087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 77
               

               
Conread position:
               
263-482
               

               
Cow position:
               
chr29:34773610-34773824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 164
               

               
Conread position:
               
264-362
               

               
Cow position:
               
chr29:1946780-1946881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
265-482
               

               
Cow position:
               
chr29:28166095-28166303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
266-413
               

               
Cow position:
               
chr29:22723727-22723576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
268-421
               

               
Cow position:
               
chr29:40791427-40791277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
268-482
               

               
Cow position:
               
chr29:36217236-36217027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
269-482
               

               
Cow position:
               
chr29:30713588-30713799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
269-482
               

               
Cow position:
               
chr29:43251042-43251258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 150
               

               
Conread position:
               
269-493
               

               
Cow position:
               
chr29:26559123-26559342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
271-419
               

               
Cow position:
               
chr29:41112760-41112910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
271-435
               

               
Cow position:
               
chr29:30918666-30918502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
271-482
               

               
Cow position:
               
chr29:19821401-19821197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
98, 85
               

               
Conread position:
               
271-482
               

               
Cow position:
               
chr29:20903171-20903375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
24, 6
               

               
Conread position:
               
271-482
               

               
Cow position:
               
chr29:39111195-39111405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
272-491
               

               
Cow position:
               
chr29:17409451-17409237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
275-421
               

               
Cow position:
               
chr29:742535-742682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
275-478
               

               
Cow position:
               
chr29:35501538-35501737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
10, 162
               

               
Conread position:
               
275-484
               

               
Cow position:
               
chr29:1557048-1556838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
10, 127
               

               
Conread position:
               
275-491
               

               
Cow position:
               
chr29:17154891-17154669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
277-480
               

               
Cow position:
               
chr29:43328756-43328552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 162
               

               
Conread position:
               
277-481
               

               
Cow position:
               
chr29:4085423-4085230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
277-482
               

               
Cow position:
               
chr29:39567795-39567597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
15, 87
               

               
Conread position:
               
277-489
               

               
Cow position:
               
chr29:6293366-6293572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
278-420
               

               
Cow position:
               
chr29:21285472-21285328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 58
               

               
Conread position:
               
278-423
               

               
Cow position:
               
chr29:27819331-27819182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
279-472
               

               
Cow position:
               
chr29:18012667-18012474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
280-397
               

               
Cow position:
               
chr29:16672601-16672482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
280-482
               

               
Cow position:
               
chr29:27330001-27329802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
280-482
               

               
Cow position:
               
chr29:28868751-28868546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
280-482
               

               
Cow position:
               
chr29:32210960-32211146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
10, 72
               

               
Conread position:
               
280-497
               

               
Cow position:
               
chr29:44236562-44236347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
89, 157
               

               
Conread position:
               
281-411
               

               
Cow position:
               
chr29:7290886-7290753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
281-421
               

               
Cow position:
               
chr29:21509959-21509819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-426
               

               
Cow position:
               
chr29:18556780-18556634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
281-461
               

               
Cow position:
               
chr29:109791-109628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
281-480
               

               
Cow position:
               
chr29:693899-694089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr29:6286053-6286248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
88, 137
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr29:10235028-10235223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr29:19339111-19338897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
9, 177
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr29:22778063-22778267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr29:22936381-22936180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr29:32963647-32963466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 69
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr29:40959741-40959937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
85, 133
               

               
Conread position:
               
281-491
               

               
Cow position:
               
chr29:8862373-8862576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
92, 66
               

               
Conread position:
               
281-493
               

               
Cow position:
               
chr29:9912283-9912070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
281-494
               

               
Cow position:
               
chr29:706847-707054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
11, 72
               

               
Conread position:
               
281-495
               

               
Cow position:
               
chr29:26416459-26416242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
87, 73
               

               
Conread position:
               
281-495
               

               
Cow position:
               
chr29:28993972-28993757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
282-463
               

               
Cow position:
               
chr29:30548885-30548702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 133
               

               
Conread position:
               
282-482
               

               
Cow position:
               
chr29:2984997-2984798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
282-482
               

               
Cow position:
               
chr29:6926114-6925922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 85
               

               
Conread position:
               
282-494
               

               
Cow position:
               
chr29:463543-463759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
283-482
               

               
Cow position:
               
chr29:23389452-23389646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
143, 16
               

               
Conread position:
               
286-402
               

               
Cow position:
               
chr29:29308468-29308586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
286-462
               

               
Cow position:
               
chr29:32926207-32926026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
79, 164
               

               
Conread position:
               
286-464
               

               
Cow position:
               
chr29:23825776-23825596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
54, 137
               

               
Conread position:
               
286-472
               

               
Cow position:
               
chr29:8004824-8005003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
286-478
               

               
Cow position:
               
chr29:12625873-12626065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
80, 159
               

               
Conread position:
               
286-480
               

               
Cow position:
               
chr29:44008682-44008869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 53
               

               
Conread position:
               
286-481
               

               
Cow position:
               
chr29:21941704-21941510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
83, 127
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr29:847539-847731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
55, 86
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr29:4334821-4334638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 47
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr29:4874777-4874977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
82, 34
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr29:27873704-27873514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
80, 113
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr29:29314545-29314745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 163
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr29:31926197-31926379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr29:40853031-40852843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
83, 128
               

               
Conread position:
               
286-493
               

               
Cow position:
               
chr29:18085675-18085469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
82, 141
               

               
Conread position:
               
286-494
               

               
Cow position:
               
chr29:7966349-7966135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
80, 140
               

               
Conread position:
               
286-494
               

               
Cow position:
               
chr29:17607519-17607313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
289-420
               

               
Cow position:
               
chr29:5789128-5788996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
80, 55
               

               
Conread position:
               
289-429
               

               
Cow position:
               
chr29:8686430-8686290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
77, 131
               

               
Conread position:
               
289-482
               

               
Cow position:
               
chr29:22162149-22162343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
79, 142
               

               
Conread position:
               
289-482
               

               
Cow position:
               
chr29:24578963-24578768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
79, 157
               

               
Conread position:
               
289-482
               

               
Cow position:
               
chr29:29176517-29176705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 69
               

               
Conread position:
               
289-494
               

               
Cow position:
               
chr29:11053760-11053962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
195, 124
               

               
Conread position:
               
290-476
               

               
Cow position:
               
chr29:43496138-43495964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
290-480
               

               
Cow position:
               
chr29:6015225-6015034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
90, 80
               

               
Conread position:
               
290-480
               

               
Cow position:
               
chr29:31814037-31813860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 90
               

               
Conread position:
               
290-482
               

               
Cow position:
               
chr29:1229706-1229518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
77, 109
               

               
Conread position:
               
290-482
               

               
Cow position:
               
chr29:13127021-13127212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 138
               

               
Conread position:
               
290-482
               

               
Cow position:
               
chr29:19428759-19428569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
290-482
               

               
Cow position:
               
chr29:26615618-26615812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
31, 82
               

               
Conread position:
               
290-482
               

               
Cow position:
               
chr29:28195422-28195603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
291-482
               

               
Cow position:
               
chr29:5186395-5186586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
76, 148
               

               
Conread position:
               
292-476
               

               
Cow position:
               
chr29:356418-356235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 120
               

               
Conread position:
               
292-476
               

               
Cow position:
               
chr29:6208157-6207980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
77, 52
               

               
Conread position:
               
292-476
               

               
Cow position:
               
chr29:42886640-42886466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 120
               

               
Conread position:
               
292-482
               

               
Cow position:
               
chr29:23983858-23984048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
78, 153
               

               
Conread position:
               
292-482
               

               
Cow position:
               
chr29:24624345-24624160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
77, 39
               

               
Conread position:
               
292-496
               

               
Cow position:
               
chr29:18021586-18021783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
60, 54
               

               
Conread position:
               
293-432
               

               
Cow position:
               
chr29:19558923-19559062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
73, 127
               

               
Conread position:
               
293-458
               

               
Cow position:
               
chr29:30350835-30351001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 157
               

               
Conread position:
               
293-490
               

               
Cow position:
               
chr29:4367822-4367624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
76, 119
               

               
Conread position:
               
294-482
               

               
Cow position:
               
chr29:32521965-32521780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 37
               

               
Conread position:
               
299-419
               

               
Cow position:
               
chr29:40903265-40903143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
299-482
               

               
Cow position:
               
chr29:41365199-41365022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
70, 44
               

               
Conread position:
               
304-482
               

               
Cow position:
               
chr29:4444803-4444624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
65, 146
               

               
Conread position:
               
304-482
               

               
Cow position:
               
chr29:15940545-15940724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 144
               

               
Conread position:
               
305-482
               

               
Cow position:
               
chr29:868859-868685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
64, 104
               

               
Conread position:
               
305-494
               

               
Cow position:
               
chr29:4051907-4052091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
111, 25
               

               
Conread position:
               
306-489
               

               
Cow position:
               
chr29:23812956-23813133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
61, 108
               

               
Conread position:
               
307-482
               

               
Cow position:
               
chr29:44682022-44682189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 92
               

               
Conread position:
               
308-479
               

               
Cow position:
               
chr29:29795301-29795472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
61, 102
               

               
Conread position:
               
308-482
               

               
Cow position:
               
chr29:20924987-20924813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 129
               

               
Conread position:
               
308-494
               

               
Cow position:
               
chr29:9454977-9455158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
60, 112
               

               
Conread position:
               
309-458
               

               
Cow position:
               
chr29:36830438-36830293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
57, 103
               

               
Conread position:
               
309-482
               

               
Cow position:
               
chr29:5275172-5275343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
57, 111
               

               
Conread position:
               
313-494
               

               
Cow position:
               
chr29:17036-17211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
313-494
               

               
Cow position:
               
chr29:17668563-17668388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
314-482
               

               
Cow position:
               
chr29:22721452-22721283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 133
               

               
Conread position:
               
314-482
               

               
Cow position:
               
chr29:24103466-24103635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 67
               

               
Conread position:
               
316-494
               

               
Cow position:
               
chr29:28587525-28587344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 129
               

               
Conread position:
               
318-482
               

               
Cow position:
               
chr29:10018650-10018486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
51, 107
               

               
Conread position:
               
321-482
               

               
Cow position:
               
chr29:9139489-9139323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 39
               

               
Conread position:
               
322-442
               

               
Cow position:
               
chr29:44988723-44988840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
44, 77
               

               
Conread position:
               
323-479
               

               
Cow position:
               
chr29:2071505-2071660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 97
               

               
Conread position:
               
323-482
               

               
Cow position:
               
chr29:36183347-36183191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
325-480
               

               
Cow position:
               
chr29:13487015-13486861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
327-482
               

               
Cow position:
               
chr29:26771501-26771344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
40, 121
               

               
Conread position:
               
332-482
               

               
Cow position:
               
chr29:17301591-17301439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 113
               

               
Conread position:
               
332-482
               

               
Cow position:
               
chr29:29558383-29558518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
339-482
               

               
Cow position:
               
chr29:25839750-25839604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
30, 111
               

               
Conread position:
               
350-452
               

               
Cow position:
               
chr29:5445679-5445782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
19, 96
               

               
Conread position:
               
351-482
               

               
Cow position:
               
chr29:12004724-12004851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
354-493
               

               
Cow position:
               
chr29:1395632-1395494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
365-482
               

               
Cow position:
               
chr29:11489698-11489812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
365-497
               

               
Cow position:
               
chr29:29295896-29295767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
366-482
               

               
Cow position:
               
chr29:3538884-3539001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
59, 80
               
Show alignments to all cow chromosomes.