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Cow genome map

           
Conread name:
           
Pig1-82B13
        

               
Conread position:
               
81-495
               

               
Cow position:
               
chr5:32338627-32339039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
136-482
               

               
Cow position:
               
chr5:42845323-42845660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
136-482
               

               
Cow position:
               
chr5:43992622-43992259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr5:5030705-5030505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
147-494
               

               
Cow position:
               
chr5:55068962-55068631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
150-476
               

               
Cow position:
               
chr5:58667-58991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
20, 105
               

               
Conread position:
               
151-416
               

               
Cow position:
               
chr5:50824860-50824592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
50, 38
               

               
Conread position:
               
151-477
               

               
Cow position:
               
chr5:41009744-41010057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
151-478
               

               
Cow position:
               
chr5:65753125-65752798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
42, 137
               

               
Conread position:
               
152-414
               

               
Cow position:
               
chr5:61049593-61049334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
19, 99
               

               
Conread position:
               
152-427
               

               
Cow position:
               
chr5:17566179-17566450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
70, 42
               

               
Conread position:
               
153-420
               

               
Cow position:
               
chr5:65679725-65679974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
213, 61
               

               
Conread position:
               
153-438
               

               
Cow position:
               
chr5:34914799-34915076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 33
               

               
Conread position:
               
154-482
               

               
Cow position:
               
chr5:33560484-33560796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
212, 19
               

               
Conread position:
               
155-465
               

               
Cow position:
               
chr5:45405308-45404995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
14, 139
               

               
Conread position:
               
155-481
               

               
Cow position:
               
chr5:66972683-66972366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 20
               

               
Conread position:
               
156-482
               

               
Cow position:
               
chr5:65940995-65941313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 116
               

               
Conread position:
               
158-442
               

               
Cow position:
               
chr5:46672464-46672181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
159-482
               

               
Cow position:
               
chr5:24995972-24996286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 29
               

               
Conread position:
               
160-472
               

               
Cow position:
               
chr5:57156052-57156367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
92, 15
               

               
Conread position:
               
161-482
               

               
Cow position:
               
chr5:37646278-37646611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
162-375
               

               
Cow position:
               
chr5:30221528-30221737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
162-425
               

               
Cow position:
               
chr5:22667317-22667064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
254, 11
               

               
Conread position:
               
163-482
               

               
Cow position:
               
chr5:29097610-29097304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
26, 89
               

               
Conread position:
               
163-482
               

               
Cow position:
               
chr5:47602054-47601756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
204, 10
               

               
Conread position:
               
163-483
               

               
Cow position:
               
chr5:44028063-44028369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
164-392
               

               
Cow position:
               
chr5:13270769-13270993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
166-377
               

               
Cow position:
               
chr5:8736034-8736240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
201, 23
               

               
Conread position:
               
166-482
               

               
Cow position:
               
chr5:4347449-4347791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
166-482
               

               
Cow position:
               
chr5:18574428-18574110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 92
               

               
Conread position:
               
166-493
               

               
Cow position:
               
chr5:59081944-59082268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
5, 88
               

               
Conread position:
               
166-495
               

               
Cow position:
               
chr5:70678401-70678718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
320, 84
               

               
Conread position:
               
167-376
               

               
Cow position:
               
chr5:48061867-48062077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
167-398
               

               
Cow position:
               
chr5:54312842-54312619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
199, 31
               

               
Conread position:
               
167-401
               

               
Cow position:
               
chr5:54751051-54750822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
199, 85
               

               
Conread position:
               
167-442
               

               
Cow position:
               
chr5:26548902-26549166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
201, 20
               

               
Conread position:
               
167-481
               

               
Cow position:
               
chr5:34562251-34561950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
201, 14
               

               
Conread position:
               
167-482
               

               
Cow position:
               
chr5:48154221-48154535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
202, 22
               

               
Conread position:
               
167-482
               

               
Cow position:
               
chr5:57526686-57526981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
196, 9
               

               
Conread position:
               
167-491
               

               
Cow position:
               
chr5:57767746-57768053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
202, 22
               

               
Conread position:
               
168-361
               

               
Cow position:
               
chr5:53175008-53175202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
168-375
               

               
Cow position:
               
chr5:19298432-19298638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 21
               

               
Conread position:
               
168-377
               

               
Cow position:
               
chr5:1693850-1694049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
199, 82
               

               
Conread position:
               
168-390
               

               
Cow position:
               
chr5:16185623-16185404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
168-422
               

               
Cow position:
               
chr5:30562167-30561926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
199, 22
               

               
Conread position:
               
168-434
               

               
Cow position:
               
chr5:2827622-2827359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
168-459
               

               
Cow position:
               
chr5:68537422-68537707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 84
               

               
Conread position:
               
168-478
               

               
Cow position:
               
chr5:61771366-61771055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
168-481
               

               
Cow position:
               
chr5:46681482-46681777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
204, 21
               

               
Conread position:
               
168-482
               

               
Cow position:
               
chr5:24349356-24349045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
99, 27
               

               
Conread position:
               
168-482
               

               
Cow position:
               
chr5:33834282-33833981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
198, 84
               

               
Conread position:
               
168-482
               

               
Cow position:
               
chr5:59384445-59384753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
168-482
               

               
Cow position:
               
chr5:65140543-65140230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
168-494
               

               
Cow position:
               
chr5:11667943-11668260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 21
               

               
Conread position:
               
168-494
               

               
Cow position:
               
chr5:44921145-44921471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
168-495
               

               
Cow position:
               
chr5:4280686-4280375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 82
               

               
Conread position:
               
169-307
               

               
Cow position:
               
chr5:62183162-62183026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
6, 81
               

               
Conread position:
               
169-361
               

               
Cow position:
               
chr5:34918583-34918402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
169-377
               

               
Cow position:
               
chr5:32976004-32975796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
117, 45
               

               
Conread position:
               
169-384
               

               
Cow position:
               
chr5:24915286-24915495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
197, 7
               

               
Conread position:
               
169-384
               

               
Cow position:
               
chr5:64843723-64843939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 113
               

               
Conread position:
               
169-392
               

               
Cow position:
               
chr5:60595872-60596107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
96, 195
               

               
Conread position:
               
169-400
               

               
Cow position:
               
chr5:26167661-26167437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
169-408
               

               
Cow position:
               
chr5:26497447-26497669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
198, 59
               

               
Conread position:
               
169-412
               

               
Cow position:
               
chr5:64060686-64060450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
194, 20
               

               
Conread position:
               
169-413
               

               
Cow position:
               
chr5:59631727-59631476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
169-414
               

               
Cow position:
               
chr5:61999314-61999555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 136
               

               
Conread position:
               
169-418
               

               
Cow position:
               
chr5:11562485-11562725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
169-421
               

               
Cow position:
               
chr5:52853209-52852966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
6, 109
               

               
Conread position:
               
169-424
               

               
Cow position:
               
chr5:56549608-56549353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
197, 20
               

               
Conread position:
               
169-429
               

               
Cow position:
               
chr5:69383494-69383243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
169-434
               

               
Cow position:
               
chr5:5760067-5760331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
169-434
               

               
Cow position:
               
chr5:16937794-16938038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
197, 20
               

               
Conread position:
               
169-452
               

               
Cow position:
               
chr5:33273937-33273657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 7
               

               
Conread position:
               
169-455
               

               
Cow position:
               
chr5:54875454-54875736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
179, 18
               

               
Conread position:
               
169-462
               

               
Cow position:
               
chr5:57372044-57371753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
200, 25
               

               
Conread position:
               
169-465
               

               
Cow position:
               
chr5:61784485-61784774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
200, 12
               

               
Conread position:
               
169-476
               

               
Cow position:
               
chr5:63114228-63114536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
197, 20
               

               
Conread position:
               
169-478
               

               
Cow position:
               
chr5:59395907-59395598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
169-480
               

               
Cow position:
               
chr5:44796495-44796792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 71
               

               
Conread position:
               
169-480
               

               
Cow position:
               
chr5:64591841-64592155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
47, 59
               

               
Conread position:
               
169-481
               

               
Cow position:
               
chr5:36038763-36039066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
169-481
               

               
Cow position:
               
chr5:42064449-42064141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
7, 27
               

               
Conread position:
               
169-481
               

               
Cow position:
               
chr5:51053404-51053712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
24, 86
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr5:3772084-3771785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
17, 109
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr5:12322570-12322864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
198, 83
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr5:18289360-18289067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr5:22242532-22242837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
20, 62
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr5:23678437-23678765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
21, 163
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr5:35208505-35208200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr5:37893584-37893270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr5:43370951-43371258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr5:45225584-45225887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
200, 22
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr5:50723288-50722986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
194, 20
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr5:57755795-57756094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
258, 12
               

               
Conread position:
               
169-482
               

               
Cow position:
               
chr5:61914811-61914507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
114, 20
               

               
Conread position:
               
169-484
               

               
Cow position:
               
chr5:46322544-46322876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
99, 45
               

               
Conread position:
               
169-486
               

               
Cow position:
               
chr5:30233149-30232836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
194, 7
               

               
Conread position:
               
169-496
               

               
Cow position:
               
chr5:39937358-39937030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
169-496
               

               
Cow position:
               
chr5:43604381-43604066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
11, 82
               

               
Conread position:
               
170-367
               

               
Cow position:
               
chr5:19294277-19294476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 130
               

               
Conread position:
               
170-376
               

               
Cow position:
               
chr5:2355760-2355560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
170-388
               

               
Cow position:
               
chr5:49821671-49821456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
196, 80
               

               
Conread position:
               
170-413
               

               
Cow position:
               
chr5:60514786-60515025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
42, 19
               

               
Conread position:
               
170-419
               

               
Cow position:
               
chr5:56222298-56222547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
112, 17
               

               
Conread position:
               
170-425
               

               
Cow position:
               
chr5:56613322-56613573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
14, 112
               

               
Conread position:
               
170-442
               

               
Cow position:
               
chr5:52108017-52108291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
13, 27
               

               
Conread position:
               
170-454
               

               
Cow position:
               
chr5:57101286-57101561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
245, 119
               

               
Conread position:
               
170-465
               

               
Cow position:
               
chr5:6443903-6444197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
107, 179
               

               
Conread position:
               
170-477
               

               
Cow position:
               
chr5:61456088-61455787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
170-482
               

               
Cow position:
               
chr5:6438786-6439096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
193, 22
               

               
Conread position:
               
170-482
               

               
Cow position:
               
chr5:49685027-49685333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
47, 60
               

               
Conread position:
               
170-482
               

               
Cow position:
               
chr5:53855958-53855635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
90, 19
               

               
Conread position:
               
170-491
               

               
Cow position:
               
chr5:41165322-41165015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 82
               

               
Conread position:
               
170-495
               

               
Cow position:
               
chr5:1247502-1247187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
199, 19
               

               
Conread position:
               
170-496
               

               
Cow position:
               
chr5:17999255-17999568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
19, 78
               

               
Conread position:
               
171-369
               

               
Cow position:
               
chr5:38079613-38079417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
190, 45
               

               
Conread position:
               
171-413
               

               
Cow position:
               
chr5:35513461-35513218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
171-492
               

               
Cow position:
               
chr5:53835960-53835643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
197, 114
               

               
Conread position:
               
172-361
               

               
Cow position:
               
chr5:29599314-29599490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
172-361
               

               
Cow position:
               
chr5:49207090-49207271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
172-383
               

               
Cow position:
               
chr5:57497187-57497392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
172-428
               

               
Cow position:
               
chr5:43846139-43846385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
8, 60
               

               
Conread position:
               
172-481
               

               
Cow position:
               
chr5:29060699-29060983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
17, 82
               

               
Conread position:
               
172-481
               

               
Cow position:
               
chr5:56071095-56070794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
196, 20
               

               
Conread position:
               
172-482
               

               
Cow position:
               
chr5:32975320-32975614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
170, 76
               

               
Conread position:
               
172-482
               

               
Cow position:
               
chr5:42050782-42050488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
123, 55
               

               
Conread position:
               
172-493
               

               
Cow position:
               
chr5:44847790-44848093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 17
               

               
Conread position:
               
172-495
               

               
Cow position:
               
chr5:43922933-43923237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
244, 70
               

               
Conread position:
               
173-361
               

               
Cow position:
               
chr5:29895408-29895227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
173-367
               

               
Cow position:
               
chr5:67340118-67339934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
173-399
               

               
Cow position:
               
chr5:19811757-19811549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
173-423
               

               
Cow position:
               
chr5:57062292-57062536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
173-433
               

               
Cow position:
               
chr5:39036019-39035762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 103
               

               
Conread position:
               
173-459
               

               
Cow position:
               
chr5:31052625-31052345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
105, 62
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chr5:50101140-50101420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
16, 78
               

               
Conread position:
               
173-474
               

               
Cow position:
               
chr5:42670636-42670918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
210, 65
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr5:21829103-21828803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 43
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr5:25035018-25035306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
213, 16
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr5:34301183-34300853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
27, 205
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr5:35246869-35247173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr5:35969776-35969478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 14
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr5:43858181-43858496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
193, 81
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr5:50713513-50713834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
149, 105
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr5:55177117-55176827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
239, 57
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr5:60016401-60016104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
195, 79
               

               
Conread position:
               
174-349
               

               
Cow position:
               
chr5:4824389-4824216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
154, 77
               

               
Conread position:
               
174-356
               

               
Cow position:
               
chr5:59662821-59662997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
174-369
               

               
Cow position:
               
chr5:20345774-20345584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
188, 76
               

               
Conread position:
               
174-373
               

               
Cow position:
               
chr5:60126929-60126733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
174-390
               

               
Cow position:
               
chr5:45037499-45037276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
175-358
               

               
Cow position:
               
chr5:40531297-40531480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
175-373
               

               
Cow position:
               
chr5:50762475-50762277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
175-379
               

               
Cow position:
               
chr5:6876730-6876931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
175-403
               

               
Cow position:
               
chr5:55942141-55942366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 100
               

               
Conread position:
               
175-481
               

               
Cow position:
               
chr5:2309323-2309618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 77
               

               
Conread position:
               
175-482
               

               
Cow position:
               
chr5:35459062-35459359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
164, 14
               

               
Conread position:
               
175-482
               

               
Cow position:
               
chr5:40152722-40152415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
191, 92
               

               
Conread position:
               
176-355
               

               
Cow position:
               
chr5:43611933-43611760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
176-410
               

               
Cow position:
               
chr5:52136818-52137048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
190, 76
               

               
Conread position:
               
176-472
               

               
Cow position:
               
chr5:19797219-19796919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
176-477
               

               
Cow position:
               
chr5:63241212-63240918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
191, 13
               

               
Conread position:
               
176-481
               

               
Cow position:
               
chr5:64321995-64321690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
92, 140
               

               
Conread position:
               
176-482
               

               
Cow position:
               
chr5:9893891-9894192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
192, 53
               

               
Conread position:
               
176-482
               

               
Cow position:
               
chr5:12557053-12557355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 74
               

               
Conread position:
               
176-482
               

               
Cow position:
               
chr5:19335542-19335847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
176-482
               

               
Cow position:
               
chr5:26467861-26467560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
179, 35
               

               
Conread position:
               
176-482
               

               
Cow position:
               
chr5:30178268-30178570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
193, 76
               

               
Conread position:
               
176-482
               

               
Cow position:
               
chr5:46512534-46512826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
192, 38
               

               
Conread position:
               
176-482
               

               
Cow position:
               
chr5:58144370-58144664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
176-486
               

               
Cow position:
               
chr5:50872046-50871737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
178, 35
               

               
Conread position:
               
176-495
               

               
Cow position:
               
chr5:36868971-36868651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
187, 74
               

               
Conread position:
               
176-495
               

               
Cow position:
               
chr5:53055325-53055638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
190, 74
               

               
Conread position:
               
176-495
               

               
Cow position:
               
chr5:64139797-64139491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 58
               

               
Conread position:
               
177-354
               

               
Cow position:
               
chr5:72310917-72310745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
177-402
               

               
Cow position:
               
chr5:57303006-57302782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
83, 93
               

               
Conread position:
               
177-420
               

               
Cow position:
               
chr5:72045443-72045678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
13, 31
               

               
Conread position:
               
177-433
               

               
Cow position:
               
chr5:4226589-4226328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
177-476
               

               
Cow position:
               
chr5:66257866-66257581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
190, 10
               

               
Conread position:
               
177-482
               

               
Cow position:
               
chr5:5257054-5257356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 96
               

               
Conread position:
               
177-482
               

               
Cow position:
               
chr5:13717326-13717630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
177-482
               

               
Cow position:
               
chr5:52728777-52729079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 83
               

               
Conread position:
               
177-497
               

               
Cow position:
               
chr5:20288028-20288340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
191, 11
               

               
Conread position:
               
178-374
               

               
Cow position:
               
chr5:6086109-6086299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
178-377
               

               
Cow position:
               
chr5:20387387-20387179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
96, 161
               

               
Conread position:
               
178-413
               

               
Cow position:
               
chr5:55965660-55965891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
189, 72
               

               
Conread position:
               
178-426
               

               
Cow position:
               
chr5:3582788-3582549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
6, 75
               

               
Conread position:
               
178-442
               

               
Cow position:
               
chr5:61875786-61875518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
88, 201
               

               
Conread position:
               
178-476
               

               
Cow position:
               
chr5:35685165-35684879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
178-482
               

               
Cow position:
               
chr5:20128287-20127993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
12, 73
               

               
Conread position:
               
178-482
               

               
Cow position:
               
chr5:21617687-21617394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 72
               

               
Conread position:
               
178-482
               

               
Cow position:
               
chr5:26262453-26262737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
110, 69
               

               
Conread position:
               
178-482
               

               
Cow position:
               
chr5:55956142-55955844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 72
               

               
Conread position:
               
178-482
               

               
Cow position:
               
chr5:59626740-59627037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 74
               

               
Conread position:
               
179-392
               

               
Cow position:
               
chr5:75760036-75760250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 176
               

               
Conread position:
               
179-480
               

               
Cow position:
               
chr5:17086786-17087083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
53, 94
               

               
Conread position:
               
181-363
               

               
Cow position:
               
chr5:6245436-6245608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
181-367
               

               
Cow position:
               
chr5:34787801-34787624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
181-384
               

               
Cow position:
               
chr5:57744681-57744892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 59
               

               
Conread position:
               
181-390
               

               
Cow position:
               
chr5:3677957-3677749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
73, 107
               

               
Conread position:
               
181-390
               

               
Cow position:
               
chr5:70189307-70189098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 88
               

               
Conread position:
               
181-391
               

               
Cow position:
               
chr5:45854730-45854515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
160, 69
               

               
Conread position:
               
181-397
               

               
Cow position:
               
chr5:74039777-74039984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
185, 62
               

               
Conread position:
               
181-401
               

               
Cow position:
               
chr5:26147817-26147606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
186, 16
               

               
Conread position:
               
181-403
               

               
Cow position:
               
chr5:51298486-51298699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
186, 71
               

               
Conread position:
               
181-407
               

               
Cow position:
               
chr5:2240760-2240980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
181-417
               

               
Cow position:
               
chr5:6520235-6520010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
171, 71
               

               
Conread position:
               
181-421
               

               
Cow position:
               
chr5:44163144-44163374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
185, 54
               

               
Conread position:
               
181-428
               

               
Cow position:
               
chr5:65552492-65552720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
185, 33
               

               
Conread position:
               
181-430
               

               
Cow position:
               
chr5:64175901-64176140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
186, 69
               

               
Conread position:
               
181-460
               

               
Cow position:
               
chr5:49341806-49342090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 270
               

               
Conread position:
               
181-472
               

               
Cow position:
               
chr5:24136963-24136660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
70, 156
               

               
Conread position:
               
181-477
               

               
Cow position:
               
chr5:66366737-66366449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
187, 26
               

               
Conread position:
               
181-477
               

               
Cow position:
               
chr5:70271096-70270801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
187, 71
               

               
Conread position:
               
181-478
               

               
Cow position:
               
chr5:19278474-19278759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
186, 71
               

               
Conread position:
               
181-481
               

               
Cow position:
               
chr5:7044477-7044769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
186, 71
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr5:7057168-7057463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 69
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr5:14550353-14550644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr5:14920697-14920993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
187, 66
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr5:19752530-19752242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 69
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr5:29828277-29827986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 68
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr5:30487456-30487174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr5:44993810-44994101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
16, 62
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr5:45845461-45845755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
134, 69
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr5:59115622-59115324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 127
               

               
Conread position:
               
181-485
               

               
Cow position:
               
chr5:46022829-46023124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
180, 42
               

               
Conread position:
               
181-489
               

               
Cow position:
               
chr5:46129438-46129732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
181, 44
               

               
Conread position:
               
181-490
               

               
Cow position:
               
chr5:72895915-72895615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
186, 91
               

               
Conread position:
               
181-491
               

               
Cow position:
               
chr5:54311585-54311264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 256
               

               
Conread position:
               
181-495
               

               
Cow position:
               
chr5:52164944-52165253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 105
               

               
Conread position:
               
182-361
               

               
Cow position:
               
chr5:21339032-21339213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
182-382
               

               
Cow position:
               
chr5:44901748-44901543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
182-383
               

               
Cow position:
               
chr5:46421826-46421619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
182-414
               

               
Cow position:
               
chr5:4166893-4166644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 153
               

               
Conread position:
               
182-418
               

               
Cow position:
               
chr5:50942932-50943157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
182-421
               

               
Cow position:
               
chr5:55783733-55783956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
234, 68
               

               
Conread position:
               
182-422
               

               
Cow position:
               
chr5:56860671-56860441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
108, 65
               

               
Conread position:
               
182-425
               

               
Cow position:
               
chr5:46540832-46541064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
182-465
               

               
Cow position:
               
chr5:58555381-58555094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
182-482
               

               
Cow position:
               
chr5:11769500-11769205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
286, 70
               

               
Conread position:
               
182-482
               

               
Cow position:
               
chr5:47316747-47317034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
185, 32
               

               
Conread position:
               
182-489
               

               
Cow position:
               
chr5:20994861-20995165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
181, 40
               

               
Conread position:
               
182-494
               

               
Cow position:
               
chr5:14903837-14904146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
182-494
               

               
Cow position:
               
chr5:60952890-60952578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
194, 70
               

               
Conread position:
               
182-496
               

               
Cow position:
               
chr5:67932238-67932540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 74
               

               
Conread position:
               
183-356
               

               
Cow position:
               
chr5:31975759-31975580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
79, 121
               

               
Conread position:
               
183-377
               

               
Cow position:
               
chr5:17987665-17987854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 92
               

               
Conread position:
               
183-380
               

               
Cow position:
               
chr5:57086835-57087025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
183-387
               

               
Cow position:
               
chr5:21721249-21721439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
183-392
               

               
Cow position:
               
chr5:35190333-35190134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
184, 69
               

               
Conread position:
               
183-409
               

               
Cow position:
               
chr5:17828250-17828472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
183, 67
               

               
Conread position:
               
183-409
               

               
Cow position:
               
chr5:60948359-60948140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
186, 69
               

               
Conread position:
               
183-417
               

               
Cow position:
               
chr5:67634281-67634518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
119, 103
               

               
Conread position:
               
183-428
               

               
Cow position:
               
chr5:29970940-29970694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
184, 46
               

               
Conread position:
               
183-478
               

               
Cow position:
               
chr5:63627313-63627584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
183-481
               

               
Cow position:
               
chr5:15479356-15479062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
183-481
               

               
Cow position:
               
chr5:30303108-30302831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
185, 69
               

               
Conread position:
               
183-481
               

               
Cow position:
               
chr5:64140765-64140471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
179, 67
               

               
Conread position:
               
183-482
               

               
Cow position:
               
chr5:30628926-30629221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 65
               

               
Conread position:
               
183-482
               

               
Cow position:
               
chr5:31475910-31475621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
183, 14
               

               
Conread position:
               
183-494
               

               
Cow position:
               
chr5:5856087-5855788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
183, 69
               

               
Conread position:
               
183-494
               

               
Cow position:
               
chr5:39815273-39815573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
252, 39
               

               
Conread position:
               
183-495
               

               
Cow position:
               
chr5:12902146-12901842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
180, 67
               

               
Conread position:
               
184-353
               

               
Cow position:
               
chr5:55949452-55949615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
184-369
               

               
Cow position:
               
chr5:30492565-30492746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
184-373
               

               
Cow position:
               
chr5:74887673-74887857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
185, 89
               

               
Conread position:
               
184-378
               

               
Cow position:
               
chr5:59335999-59335808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
182, 67
               

               
Conread position:
               
184-382
               

               
Cow position:
               
chr5:62996185-62995991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
182, 68
               

               
Conread position:
               
184-383
               

               
Cow position:
               
chr5:38647882-38647673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
184-384
               

               
Cow position:
               
chr5:57399025-57399220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
184-388
               

               
Cow position:
               
chr5:34288028-34288222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
184, 68
               

               
Conread position:
               
184-389
               

               
Cow position:
               
chr5:35145561-35145354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
184-413
               

               
Cow position:
               
chr5:34347507-34347725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
184-417
               

               
Cow position:
               
chr5:15364497-15364268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
183, 68
               

               
Conread position:
               
184-420
               

               
Cow position:
               
chr5:64026783-64027023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
19, 106
               

               
Conread position:
               
184-426
               

               
Cow position:
               
chr5:17105071-17104842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
183, 71
               

               
Conread position:
               
184-427
               

               
Cow position:
               
chr5:24069638-24069380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
71, 122
               

               
Conread position:
               
184-482
               

               
Cow position:
               
chr5:5110833-5111138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
79, 30
               

               
Conread position:
               
184-482
               

               
Cow position:
               
chr5:20843172-20843463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
184-482
               

               
Cow position:
               
chr5:43403135-43402837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 76
               

               
Conread position:
               
184-482
               

               
Cow position:
               
chr5:44726088-44726389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
184-482
               

               
Cow position:
               
chr5:47870828-47871106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
185, 51
               

               
Conread position:
               
184-482
               

               
Cow position:
               
chr5:57074111-57074396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
183, 27
               

               
Conread position:
               
184-482
               

               
Cow position:
               
chr5:61912066-61912375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
96, 206
               

               
Conread position:
               
184-482
               

               
Cow position:
               
chr5:63647251-63647537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
184-485
               

               
Cow position:
               
chr5:56028319-56028593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
113, 71
               

               
Conread position:
               
184-489
               

               
Cow position:
               
chr5:25495125-25495418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
102, 30
               

               
Conread position:
               
184-494
               

               
Cow position:
               
chr5:49474328-49474625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 68
               

               
Conread position:
               
185-355
               

               
Cow position:
               
chr5:57447439-57447604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
185-389
               

               
Cow position:
               
chr5:61580505-61580309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
185-392
               

               
Cow position:
               
chr5:37842054-37842255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
178, 67
               

               
Conread position:
               
185-414
               

               
Cow position:
               
chr5:70749961-70750183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
181, 67
               

               
Conread position:
               
185-462
               

               
Cow position:
               
chr5:69099944-69099675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
183, 87
               

               
Conread position:
               
185-482
               

               
Cow position:
               
chr5:7012624-7012911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
185-482
               

               
Cow position:
               
chr5:30247300-30247587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
178, 65
               

               
Conread position:
               
185-482
               

               
Cow position:
               
chr5:55756188-55756488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 89
               

               
Conread position:
               
186-390
               

               
Cow position:
               
chr5:20882392-20882598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
187-384
               

               
Cow position:
               
chr5:29256485-29256675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
105, 67
               

               
Conread position:
               
187-420
               

               
Cow position:
               
chr5:60523950-60523729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
180, 73
               

               
Conread position:
               
187-476
               

               
Cow position:
               
chr5:74858810-74858515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
187-482
               

               
Cow position:
               
chr5:33414184-33414472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 101
               

               
Conread position:
               
187-482
               

               
Cow position:
               
chr5:63234599-63234889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 69
               

               
Conread position:
               
188-383
               

               
Cow position:
               
chr5:19561224-19561413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
188-388
               

               
Cow position:
               
chr5:71445614-71445419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
178, 64
               

               
Conread position:
               
188-398
               

               
Cow position:
               
chr5:66659736-66659527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
178, 81
               

               
Conread position:
               
188-433
               

               
Cow position:
               
chr5:18062088-18062338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
94, 85
               

               
Conread position:
               
188-480
               

               
Cow position:
               
chr5:49440630-49440933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
78, 260
               

               
Conread position:
               
188-482
               

               
Cow position:
               
chr5:12760898-12761175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
181, 64
               

               
Conread position:
               
188-482
               

               
Cow position:
               
chr5:30276909-30276634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
188-491
               

               
Cow position:
               
chr5:35228922-35229201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
174, 25
               

               
Conread position:
               
188-493
               

               
Cow position:
               
chr5:30253962-30253666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 60
               

               
Conread position:
               
188-494
               

               
Cow position:
               
chr5:39447303-39447610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 73
               

               
Conread position:
               
189-361
               

               
Cow position:
               
chr5:38420829-38420657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 157
               

               
Conread position:
               
189-389
               

               
Cow position:
               
chr5:44734506-44734698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
177, 61
               

               
Conread position:
               
189-482
               

               
Cow position:
               
chr5:16893557-16893836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 77
               

               
Conread position:
               
189-482
               

               
Cow position:
               
chr5:65776156-65776445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
191-422
               

               
Cow position:
               
chr5:60598968-60599210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 112
               

               
Conread position:
               
191-481
               

               
Cow position:
               
chr5:50600265-50599994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
148, 58
               

               
Conread position:
               
191-482
               

               
Cow position:
               
chr5:55966654-55966942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 109
               

               
Conread position:
               
191-482
               

               
Cow position:
               
chr5:66551673-66551962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
101, 56
               

               
Conread position:
               
191-495
               

               
Cow position:
               
chr5:20779180-20779476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
276, 80
               

               
Conread position:
               
192-482
               

               
Cow position:
               
chr5:30845324-30845050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
176, 78
               

               
Conread position:
               
192-482
               

               
Cow position:
               
chr5:58447046-58446740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
63, 250
               

               
Conread position:
               
193-482
               

               
Cow position:
               
chr5:53947116-53946832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
174, 59
               

               
Conread position:
               
194-424
               

               
Cow position:
               
chr5:69033007-69033229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
172, 57
               

               
Conread position:
               
195-388
               

               
Cow position:
               
chr5:16668908-16668725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
171, 73
               

               
Conread position:
               
195-424
               

               
Cow position:
               
chr5:48867255-48867471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
171, 60
               

               
Conread position:
               
195-476
               

               
Cow position:
               
chr5:6503661-6503940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 60
               

               
Conread position:
               
195-480
               

               
Cow position:
               
chr5:17062864-17063151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
174, 52
               

               
Conread position:
               
195-482
               

               
Cow position:
               
chr5:17554820-17555095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
162, 55
               

               
Conread position:
               
195-482
               

               
Cow position:
               
chr5:48829370-48829098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 88
               

               
Conread position:
               
195-482
               

               
Cow position:
               
chr5:64523649-64523930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
171, 52
               

               
Conread position:
               
196-374
               

               
Cow position:
               
chr5:65745554-65745722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
196-376
               

               
Cow position:
               
chr5:50087982-50087807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
178, 18
               

               
Conread position:
               
196-384
               

               
Cow position:
               
chr5:53980538-53980722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
167, 54
               

               
Conread position:
               
196-409
               

               
Cow position:
               
chr5:56362025-56361803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
73, 167
               

               
Conread position:
               
196-414
               

               
Cow position:
               
chr5:25020542-25020765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
57, 109
               

               
Conread position:
               
196-457
               

               
Cow position:
               
chr5:49501604-49501863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 85
               

               
Conread position:
               
196-475
               

               
Cow position:
               
chr5:57994666-57994923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
196-476
               

               
Cow position:
               
chr5:45397779-45397515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
171, 18
               

               
Conread position:
               
196-494
               

               
Cow position:
               
chr5:23168587-23168905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
47, 261
               

               
Conread position:
               
196-494
               

               
Cow position:
               
chr5:68719081-68718793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
171, 40
               

               
Conread position:
               
197-412
               

               
Cow position:
               
chr5:3743539-3743326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
169, 79
               

               
Conread position:
               
198-384
               

               
Cow position:
               
chr5:20812761-20812578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
168, 52
               

               
Conread position:
               
200-427
               

               
Cow position:
               
chr5:44053836-44054066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
86, 49
               

               
Conread position:
               
200-494
               

               
Cow position:
               
chr5:46079929-46080211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
161, 25
               

               
Conread position:
               
202-482
               

               
Cow position:
               
chr5:64137466-64137191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
167, 47
               

               
Conread position:
               
203-422
               

               
Cow position:
               
chr5:16939385-16939600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
165, 52
               

               
Conread position:
               
203-490
               

               
Cow position:
               
chr5:59330532-59330819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
166, 78
               

               
Conread position:
               
204-482
               

               
Cow position:
               
chr5:57419590-57419854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
162, 57
               

               
Conread position:
               
213-412
               

               
Cow position:
               
chr5:38169090-38168898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
214-482
               

               
Cow position:
               
chr5:69461531-69461271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 38
               

               
Conread position:
               
214-491
               

               
Cow position:
               
chr5:458697-458420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
39, 131
               

               
Conread position:
               
235-400
               

               
Cow position:
               
chr5:5847663-5847829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
235-482
               

               
Cow position:
               
chr5:7755388-7755625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
236-416
               

               
Cow position:
               
chr5:51490067-51490245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
250-482
               

               
Cow position:
               
chr5:6045464-6045228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
32, 6
               

               
Conread position:
               
251-428
               

               
Cow position:
               
chr5:59627269-59627086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
251-494
               

               
Cow position:
               
chr5:43457362-43457596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
252-403
               

               
Cow position:
               
chr5:12738392-12738542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
252-425
               

               
Cow position:
               
chr5:57150835-57150656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
252-456
               

               
Cow position:
               
chr5:41981536-41981333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
34, 114
               

               
Conread position:
               
252-476
               

               
Cow position:
               
chr5:4709984-4710204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
34, 171
               

               
Conread position:
               
252-482
               

               
Cow position:
               
chr5:1087038-1087259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
114, 38
               

               
Conread position:
               
252-482
               

               
Cow position:
               
chr5:46509702-46509930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
116, 34
               

               
Conread position:
               
252-482
               

               
Cow position:
               
chr5:54767741-54767972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 144
               

               
Conread position:
               
252-482
               

               
Cow position:
               
chr5:59872912-59873154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 205
               

               
Conread position:
               
252-487
               

               
Cow position:
               
chr5:45419973-45420202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
114, 29
               

               
Conread position:
               
252-496
               

               
Cow position:
               
chr5:26476850-26477103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 138
               

               
Conread position:
               
253-476
               

               
Cow position:
               
chr5:40242209-40241985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
253-482
               

               
Cow position:
               
chr5:4031819-4032055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
33, 201
               

               
Conread position:
               
253-482
               

               
Cow position:
               
chr5:40559798-40559574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 161
               

               
Conread position:
               
255-397
               

               
Cow position:
               
chr5:54436920-54436775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 119
               

               
Conread position:
               
255-466
               

               
Cow position:
               
chr5:35982569-35982788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 183
               

               
Conread position:
               
255-476
               

               
Cow position:
               
chr5:63987280-63987508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 98
               

               
Conread position:
               
255-482
               

               
Cow position:
               
chr5:50533223-50533450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 94
               

               
Conread position:
               
255-482
               

               
Cow position:
               
chr5:53710526-53710753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 166
               

               
Conread position:
               
255-484
               

               
Cow position:
               
chr5:4221142-4220918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
255-490
               

               
Cow position:
               
chr5:61102877-61102642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
113, 34
               

               
Conread position:
               
255-495
               

               
Cow position:
               
chr5:27306469-27306231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 137
               

               
Conread position:
               
256-479
               

               
Cow position:
               
chr5:63059225-63059009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 99
               

               
Conread position:
               
259-481
               

               
Cow position:
               
chr5:71494982-71494758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 189
               

               
Conread position:
               
261-482
               

               
Cow position:
               
chr5:26094007-26094225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
25, 180
               

               
Conread position:
               
262-421
               

               
Cow position:
               
chr5:33155971-33155813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
30, 91
               

               
Conread position:
               
262-475
               

               
Cow position:
               
chr5:19813069-19813279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
262-486
               

               
Cow position:
               
chr5:37378008-37377798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 108
               

               
Conread position:
               
263-481
               

               
Cow position:
               
chr5:57934953-57935171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
25, 175
               

               
Conread position:
               
263-493
               

               
Cow position:
               
chr5:61726118-61725895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 28
               

               
Conread position:
               
263-494
               

               
Cow position:
               
chr5:17602048-17602276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 132
               

               
Conread position:
               
264-421
               

               
Cow position:
               
chr5:9233832-9233994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
266-384
               

               
Cow position:
               
chr5:51125854-51125977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
266-427
               

               
Cow position:
               
chr5:55232659-55232822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
266-461
               

               
Cow position:
               
chr5:2851743-2851546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 88
               

               
Conread position:
               
267-414
               

               
Cow position:
               
chr5:9170431-9170579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
267-482
               

               
Cow position:
               
chr5:35826754-35826540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 141
               

               
Conread position:
               
267-491
               

               
Cow position:
               
chr5:47323615-47323394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
19, 119
               

               
Conread position:
               
267-491
               

               
Cow position:
               
chr5:51935340-51935121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
269-472
               

               
Cow position:
               
chr5:12434694-12434480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 188
               

               
Conread position:
               
269-482
               

               
Cow position:
               
chr5:4219005-4218809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
269-482
               

               
Cow position:
               
chr5:62172561-62172353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
22, 138
               

               
Conread position:
               
269-482
               

               
Cow position:
               
chr5:62378931-62378728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
269-482
               

               
Cow position:
               
chr5:69636375-69636172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
17, 144
               

               
Conread position:
               
269-482
               

               
Cow position:
               
chr5:72951991-72951778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
99, 17
               

               
Conread position:
               
270-438
               

               
Cow position:
               
chr5:45574218-45574385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
93, 154
               

               
Conread position:
               
271-482
               

               
Cow position:
               
chr5:28302594-28302810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 175
               

               
Conread position:
               
273-414
               

               
Cow position:
               
chr5:45126799-45126653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
273-482
               

               
Cow position:
               
chr5:43929589-43929800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 106
               

               
Conread position:
               
273-493
               

               
Cow position:
               
chr5:16179366-16179599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
275-465
               

               
Cow position:
               
chr5:57101638-57101828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
275-481
               

               
Cow position:
               
chr5:16025324-16025519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
275-482
               

               
Cow position:
               
chr5:43737819-43738017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 120
               

               
Conread position:
               
275-482
               

               
Cow position:
               
chr5:57575912-57575706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
275-495
               

               
Cow position:
               
chr5:56014875-56014654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 147
               

               
Conread position:
               
276-497
               

               
Cow position:
               
chr5:34625100-34624878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
277-461
               

               
Cow position:
               
chr5:40237350-40237171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
277-468
               

               
Cow position:
               
chr5:6528825-6528626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
42, 165
               

               
Conread position:
               
277-482
               

               
Cow position:
               
chr5:3639354-3639549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
277-482
               

               
Cow position:
               
chr5:8024060-8024258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
277-482
               

               
Cow position:
               
chr5:14629663-14629876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 177
               

               
Conread position:
               
277-482
               

               
Cow position:
               
chr5:35763402-35763212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
277-482
               

               
Cow position:
               
chr5:41545750-41545957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 149
               

               
Conread position:
               
277-484
               

               
Cow position:
               
chr5:41713441-41713232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
278-481
               

               
Cow position:
               
chr5:72564905-72564700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
14, 162
               

               
Conread position:
               
278-495
               

               
Cow position:
               
chr5:7193557-7193339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
278-497
               

               
Cow position:
               
chr5:15364023-15363800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
12, 137
               

               
Conread position:
               
280-442
               

               
Cow position:
               
chr5:57230199-57230364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 136
               

               
Conread position:
               
280-462
               

               
Cow position:
               
chr5:55795827-55796008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
10, 145
               

               
Conread position:
               
280-476
               

               
Cow position:
               
chr5:34887056-34887257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 140
               

               
Conread position:
               
280-495
               

               
Cow position:
               
chr5:54375363-54375582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
10, 121
               

               
Conread position:
               
281-377
               

               
Cow position:
               
chr5:1946969-1946870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
281-403
               

               
Cow position:
               
chr5:35647481-35647356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
281-407
               

               
Cow position:
               
chr5:17604994-17605125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 108
               

               
Conread position:
               
281-421
               

               
Cow position:
               
chr5:22795350-22795212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
87, 71
               

               
Conread position:
               
281-424
               

               
Cow position:
               
chr5:24946378-24946232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
281-426
               

               
Cow position:
               
chr5:69337958-69337811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
281-428
               

               
Cow position:
               
chr5:9369135-9369283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
281-455
               

               
Cow position:
               
chr5:57686599-57686777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
9, 168
               

               
Conread position:
               
281-464
               

               
Cow position:
               
chr5:56517242-56517057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 73
               

               
Conread position:
               
281-467
               

               
Cow position:
               
chr5:20422057-20422236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
86, 74
               

               
Conread position:
               
281-467
               

               
Cow position:
               
chr5:56338883-56339068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
281-476
               

               
Cow position:
               
chr5:22643094-22643282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
281-481
               

               
Cow position:
               
chr5:38833259-38833061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
9, 87
               

               
Conread position:
               
281-481
               

               
Cow position:
               
chr5:50575919-50575723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr5:7698138-7697942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
9, 49
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr5:16206017-16206218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr5:29912558-29912356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr5:36855343-36855142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
6, 141
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr5:37646219-37646011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 173
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr5:40109630-40109428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr5:44446727-44446931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
9, 160
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr5:56317427-56317234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr5:60183943-60183738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
9, 161
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr5:67212498-67212293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 168
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr5:69731638-69731444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr5:76366157-76366358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 141
               

               
Conread position:
               
281-484
               

               
Cow position:
               
chr5:59325706-59325901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 122
               

               
Conread position:
               
281-491
               

               
Cow position:
               
chr5:30805300-30805097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
88, 76
               

               
Conread position:
               
281-495
               

               
Cow position:
               
chr5:1396737-1396524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
281-496
               

               
Cow position:
               
chr5:22446046-22445836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
282-482
               

               
Cow position:
               
chr5:37814763-37814559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
285-424
               

               
Cow position:
               
chr5:63656608-63656469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 101
               

               
Conread position:
               
285-482
               

               
Cow position:
               
chr5:31640557-31640357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
83, 146
               

               
Conread position:
               
286-390
               

               
Cow position:
               
chr5:36823014-36822913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
286-409
               

               
Cow position:
               
chr5:26723578-26723455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 40
               

               
Conread position:
               
286-417
               

               
Cow position:
               
chr5:55129474-55129342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
286-417
               

               
Cow position:
               
chr5:57489819-57489946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
286-431
               

               
Cow position:
               
chr5:56334381-56334523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
286-434
               

               
Cow position:
               
chr5:43844532-43844682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
286-442
               

               
Cow position:
               
chr5:67244049-67243895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 80
               

               
Conread position:
               
286-466
               

               
Cow position:
               
chr5:72006359-72006540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 160
               

               
Conread position:
               
286-469
               

               
Cow position:
               
chr5:15471060-15470882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
286-476
               

               
Cow position:
               
chr5:7723796-7723609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
80, 140
               

               
Conread position:
               
286-477
               

               
Cow position:
               
chr5:29352996-29353192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
286-477
               

               
Cow position:
               
chr5:56524305-56524111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
82, 162
               

               
Conread position:
               
286-480
               

               
Cow position:
               
chr5:9089897-9090081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
286-480
               

               
Cow position:
               
chr5:63426874-63427068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
84, 160
               

               
Conread position:
               
286-481
               

               
Cow position:
               
chr5:14473272-14473475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
286-481
               

               
Cow position:
               
chr5:47696319-47696504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
140, 62
               

               
Conread position:
               
286-481
               

               
Cow position:
               
chr5:54350230-54350425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
83, 159
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:15426669-15426466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
97, 83
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:21039852-21040036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:26990519-26990329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
130, 31
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:28230295-28230091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:29771659-29771454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
76, 169
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:29903392-29903581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
81, 128
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:37808532-37808732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
80, 164
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:45804191-45803996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:52000349-52000159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:54060407-54060214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
77, 91
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:56680387-56680186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
60, 159
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:58856233-58856041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
83, 60
               

               
Conread position:
               
286-483
               

               
Cow position:
               
chr5:50821914-50821718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
77, 120
               

               
Conread position:
               
286-485
               

               
Cow position:
               
chr5:28224583-28224388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
286-489
               

               
Cow position:
               
chr5:1461220-1461018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
80, 141
               

               
Conread position:
               
286-492
               

               
Cow position:
               
chr5:62142807-62142601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
80, 128
               

               
Conread position:
               
286-494
               

               
Cow position:
               
chr5:35784858-35785055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
286-494
               

               
Cow position:
               
chr5:39258636-39258442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
286-495
               

               
Cow position:
               
chr5:14314659-14314450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
81, 153
               

               
Conread position:
               
286-497
               

               
Cow position:
               
chr5:63992041-63992257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
82, 90
               

               
Conread position:
               
287-476
               

               
Cow position:
               
chr5:63832057-63831870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
287-482
               

               
Cow position:
               
chr5:41294210-41294018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
76, 91
               

               
Conread position:
               
287-494
               

               
Cow position:
               
chr5:38076354-38076562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
289-391
               

               
Cow position:
               
chr5:51490474-51490577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
289-416
               

               
Cow position:
               
chr5:26253045-26253173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
289-468
               

               
Cow position:
               
chr5:67118548-67118369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 146
               

               
Conread position:
               
289-482
               

               
Cow position:
               
chr5:6286305-6286487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 125
               

               
Conread position:
               
289-482
               

               
Cow position:
               
chr5:30949787-30949979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
74, 136
               

               
Conread position:
               
289-482
               

               
Cow position:
               
chr5:35126182-35125990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
289-482
               

               
Cow position:
               
chr5:41452544-41452731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
289-485
               

               
Cow position:
               
chr5:63150041-63150235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
175, 130
               

               
Conread position:
               
289-491
               

               
Cow position:
               
chr5:60747153-60747349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
139, 28
               

               
Conread position:
               
289-495
               

               
Cow position:
               
chr5:15598110-15598308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
290-414
               

               
Cow position:
               
chr5:4267797-4267672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
290-441
               

               
Cow position:
               
chr5:60189120-60188966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 133
               

               
Conread position:
               
290-465
               

               
Cow position:
               
chr5:36839086-36838908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
290-477
               

               
Cow position:
               
chr5:45574747-45574557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 151
               

               
Conread position:
               
290-481
               

               
Cow position:
               
chr5:26150294-26150483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
290-482
               

               
Cow position:
               
chr5:18899100-18898915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
79, 30
               

               
Conread position:
               
290-482
               

               
Cow position:
               
chr5:26377541-26377732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
290-482
               

               
Cow position:
               
chr5:28927467-28927652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
125, 60
               

               
Conread position:
               
290-482
               

               
Cow position:
               
chr5:48009732-48009912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
78, 97
               

               
Conread position:
               
290-482
               

               
Cow position:
               
chr5:56467817-56467637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 41
               

               
Conread position:
               
290-482
               

               
Cow position:
               
chr5:56518095-56518273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
76, 112
               

               
Conread position:
               
290-482
               

               
Cow position:
               
chr5:60715241-60715421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
290-493
               

               
Cow position:
               
chr5:33538001-33537793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 122
               

               
Conread position:
               
290-493
               

               
Cow position:
               
chr5:64758640-64758846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
73, 141
               

               
Conread position:
               
291-460
               

               
Cow position:
               
chr5:56212031-56211860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
69, 152
               

               
Conread position:
               
291-482
               

               
Cow position:
               
chr5:6683241-6683418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
291-482
               

               
Cow position:
               
chr5:38689414-38689606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
292-464
               

               
Cow position:
               
chr5:56153740-56153569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
128, 52
               

               
Conread position:
               
292-477
               

               
Cow position:
               
chr5:57737224-57737046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
74, 122
               

               
Conread position:
               
292-482
               

               
Cow position:
               
chr5:16214812-16214621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
77, 159
               

               
Conread position:
               
292-482
               

               
Cow position:
               
chr5:28945935-28946125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 77
               

               
Conread position:
               
292-482
               

               
Cow position:
               
chr5:39875249-39875062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
77, 150
               

               
Conread position:
               
292-489
               

               
Cow position:
               
chr5:27411276-27411467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 116
               

               
Conread position:
               
292-492
               

               
Cow position:
               
chr5:28035867-28035668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
77, 7
               

               
Conread position:
               
292-495
               

               
Cow position:
               
chr5:29515380-29515571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
292-496
               

               
Cow position:
               
chr5:27419604-27419808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
74, 153
               

               
Conread position:
               
293-479
               

               
Cow position:
               
chr5:34441656-34441851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
76, 141
               

               
Conread position:
               
293-490
               

               
Cow position:
               
chr5:21534987-21535185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 109
               

               
Conread position:
               
293-491
               

               
Cow position:
               
chr5:17028219-17028021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
76, 156
               

               
Conread position:
               
293-494
               

               
Cow position:
               
chr5:23529159-23529356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
185, 7
               

               
Conread position:
               
293-495
               

               
Cow position:
               
chr5:41609408-41609209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
123, 77
               

               
Conread position:
               
294-418
               

               
Cow position:
               
chr5:55350787-55350914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
294-483
               

               
Cow position:
               
chr5:23357452-23357271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 52
               

               
Conread position:
               
295-482
               

               
Cow position:
               
chr5:65588821-65588640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
296-491
               

               
Cow position:
               
chr5:58793486-58793681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 130
               

               
Conread position:
               
297-475
               

               
Cow position:
               
chr5:9390677-9390489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 159
               

               
Conread position:
               
297-482
               

               
Cow position:
               
chr5:56636015-56635838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
66, 107
               

               
Conread position:
               
298-440
               

               
Cow position:
               
chr5:62415842-62415986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
298-482
               

               
Cow position:
               
chr5:32672948-32673124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
298-482
               

               
Cow position:
               
chr5:32696704-32696884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
299-494
               

               
Cow position:
               
chr5:52644962-52645155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
303-413
               

               
Cow position:
               
chr5:39226508-39226621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
304-482
               

               
Cow position:
               
chr5:61840302-61840129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
14, 107
               

               
Conread position:
               
304-482
               

               
Cow position:
               
chr5:65883659-65883836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
59, 134
               

               
Conread position:
               
304-483
               

               
Cow position:
               
chr5:24175488-24175302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 79
               

               
Conread position:
               
304-492
               

               
Cow position:
               
chr5:55929057-55928869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
65, 147
               

               
Conread position:
               
306-482
               

               
Cow position:
               
chr5:57561634-57561457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 108
               

               
Conread position:
               
306-484
               

               
Cow position:
               
chr5:31481259-31481081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
62, 122
               

               
Conread position:
               
308-482
               

               
Cow position:
               
chr5:11965221-11965392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
95, 62
               

               
Conread position:
               
308-482
               

               
Cow position:
               
chr5:19524009-19523837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
58, 125
               

               
Conread position:
               
308-482
               

               
Cow position:
               
chr5:47704017-47704189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
61, 121
               

               
Conread position:
               
309-466
               

               
Cow position:
               
chr5:31918750-31918598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
309-482
               

               
Cow position:
               
chr5:40039657-40039833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
5, 65
               

               
Conread position:
               
310-482
               

               
Cow position:
               
chr5:50637928-50637763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
127, 59
               

               
Conread position:
               
311-482
               

               
Cow position:
               
chr5:21920487-21920312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
313-481
               

               
Cow position:
               
chr5:4617470-4617305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
314-494
               

               
Cow position:
               
chr5:36255154-36255337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
315-482
               

               
Cow position:
               
chr5:45273399-45273563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 105
               

               
Conread position:
               
316-493
               

               
Cow position:
               
chr5:34193007-34192827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
317-477
               

               
Cow position:
               
chr5:34638983-34638826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
317-482
               

               
Cow position:
               
chr5:69520991-69520830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 108
               

               
Conread position:
               
318-496
               

               
Cow position:
               
chr5:57639875-57640046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 51
               

               
Conread position:
               
319-482
               

               
Cow position:
               
chr5:16509204-16509033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
44, 123
               

               
Conread position:
               
321-482
               

               
Cow position:
               
chr5:56820168-56820325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
322-482
               

               
Cow position:
               
chr5:73080300-73080137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
33, 120
               

               
Conread position:
               
325-476
               

               
Cow position:
               
chr5:34528639-34528498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
326-482
               

               
Cow position:
               
chr5:46122262-46122413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
43, 82
               

               
Conread position:
               
339-470
               

               
Cow position:
               
chr5:20371212-20371075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
339-482
               

               
Cow position:
               
chr5:32140630-32140771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
345-482
               

               
Cow position:
               
chr5:34107307-34107173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
349-484
               

               
Cow position:
               
chr5:21964357-21964221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
350-482
               

               
Cow position:
               
chr5:2500112-2500247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
351-482
               

               
Cow position:
               
chr5:29979916-29980050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
357-492
               

               
Cow position:
               
chr5:1766291-1766422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
359-481
               

               
Cow position:
               
chr5:32956036-32956158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
10, 88
               

               
Conread position:
               
360-482
               

               
Cow position:
               
chr5:34115709-34115587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
58, 87
               

               
Conread position:
               
365-482
               

               
Cow position:
               
chr5:30293519-30293635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
365-482
               

               
Cow position:
               
chr5:51800921-51801035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
366-482
               

               
Cow position:
               
chr5:7140056-7140171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
366-482
               

               
Cow position:
               
chr5:35235659-35235772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
367-482
               

               
Cow position:
               
chr5:60448265-60448153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
369-479
               

               
Cow position:
               
chr5:40515411-40515519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
379-482
               

               
Cow position:
               
chr5:17644617-17644718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               
Show alignments to all cow chromosomes.