Non-Coding RNA Search

Cow genome map


           Conread name:
           Pig1-83L09
        

               Conread position:
               1-187
               

               Cow position:
               chrX:32867117-32866935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               18, 11
               

               Conread position:
               1-234
               

               Cow position:
               chrX:4559979-4559743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               56, 20
               

               Conread position:
               1-238
               

               Cow position:
               chrX:27668714-27668958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               9, 37
               

               Conread position:
               1-244
               

               Cow position:
               chrX:35659042-35658794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               18, 37
               

               Conread position:
               1-252
               

               Cow position:
               chrX:16984882-16984625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               59, 35
               

               Conread position:
               1-283
               

               Cow position:
               chrX:6599529-6599828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               57, 24
               

               Conread position:
               1-284
               

               Cow position:
               chrX:27306685-27306407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               191, 11
               

               Conread position:
               1-293
               

               Cow position:
               chrX:35986065-35985764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               221
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               14, 39
               

               Conread position:
               1-299
               

               Cow position:
               chrX:39353018-39352720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               229
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               62, 29
               

               Conread position:
               1-350
               

               Cow position:
               chrX:17949248-17949601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               56, 20
               

               Conread position:
               1-363
               

               Cow position:
               chrX:27945805-27946183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               259
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               39, 15
               

               Conread position:
               1-367
               

               Cow position:
               chrX:34315772-34315396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               280
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               57, 15
               

               Conread position:
               1-369
               

               Cow position:
               chrX:29723998-29723611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               271
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               59, 36
               

               Conread position:
               1-398
               

               Cow position:
               chrX:27207040-27206636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               280
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               57, 29
               

               Conread position:
               1-410
               

               Cow position:
               chrX:27145843-27145447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 14
               

               Conread position:
               1-430
               

               Cow position:
               chrX:47484014-47484467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               309
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               39, 13
               

               Conread position:
               1-452
               

               Cow position:
               chrX:11633925-11633460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 14
               

               Conread position:
               1-453
               

               Cow position:
               chrX:21642237-21642697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               308
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               56, 15
               

               Conread position:
               1-466
               

               Cow position:
               chrX:17231989-17231502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 112
               

               Conread position:
               1-468
               

               Cow position:
               chrX:30962631-30963106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 15
               

               Conread position:
               1-472
               

               Cow position:
               chrX:42492276-42492748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 20
               

               Conread position:
               1-479
               

               Cow position:
               chrX:27431680-27432164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 11
               

               Conread position:
               1-500
               

               Cow position:
               chrX:4996832-4996345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 25
               

               Conread position:
               1-501
               

               Cow position:
               chrX:31729680-31729191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 12
               

               Conread position:
               1-502
               

               Cow position:
               chrX:12290961-12290468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 11
               

               Conread position:
               1-502
               

               Cow position:
               chrX:41526288-41526787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 24
               

               Conread position:
               1-503
               

               Cow position:
               chrX:15146950-15147455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 38
               

               Conread position:
               1-508
               

               Cow position:
               chrX:27705835-27705319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 37
               

               Conread position:
               1-509
               

               Cow position:
               chrX:4268822-4269342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 37
               

               Conread position:
               1-509
               

               Cow position:
               chrX:20339647-20340166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 37
               

               Conread position:
               1-509
               

               Cow position:
               chrX:27446931-27446416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 37
               

               Conread position:
               1-509
               

               Cow position:
               chrX:31948690-31949206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 11
               

               Conread position:
               1-509
               

               Cow position:
               chrX:34441210-34441722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 47
               

               Conread position:
               1-509
               

               Cow position:
               chrX:40826506-40827022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 15
               

               Conread position:
               1-509
               

               Cow position:
               chrX:41878689-41879206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 37
               

               Conread position:
               1-509
               

               Cow position:
               chrX:44192190-44192717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 113
               

               Conread position:
               1-524
               

               Cow position:
               chrX:1175745-1176264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 21
               

               Conread position:
               2-172
               

               Cow position:
               chrX:231779-231943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               21, 37
               

               Conread position:
               2-184
               

               Cow position:
               chrX:41215566-41215385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               58, 10
               

               Conread position:
               2-188
               

               Cow position:
               chrX:26881833-26882021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               53, 35
               

               Conread position:
               2-188
               

               Cow position:
               chrX:41363601-41363800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               6, 26
               

               Conread position:
               2-279
               

               Cow position:
               chrX:25441314-25441570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               238, 13
               

               Conread position:
               2-286
               

               Cow position:
               chrX:23089081-23088817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               13, 29
               

               Conread position:
               2-321
               

               Cow position:
               chrX:36866419-36866089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               58, 35
               

               Conread position:
               2-413
               

               Cow position:
               chrX:36061402-36060973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               288
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               56, 19
               

               Conread position:
               2-432
               

               Cow position:
               chrX:33001150-33000706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 92
               

               Conread position:
               2-441
               

               Cow position:
               chrX:46588067-46587611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 36
               

               Conread position:
               2-471
               

               Cow position:
               chrX:7722219-7721748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 28
               

               Conread position:
               2-492
               

               Cow position:
               chrX:32019886-32020380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 114
               

               Conread position:
               2-502
               

               Cow position:
               chrX:40480603-40481141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 28
               

               Conread position:
               2-504
               

               Cow position:
               chrX:42331515-42331012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               55, 14
               

               Conread position:
               2-507
               

               Cow position:
               chrX:152152-151628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 10
               

               Conread position:
               2-509
               

               Cow position:
               chrX:6544491-6543981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 35
               

               Conread position:
               2-509
               

               Cow position:
               chrX:34565527-34565025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 14
               

               Conread position:
               3-184
               

               Cow position:
               chrX:11529584-11529406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               21, 36
               

               Conread position:
               3-188
               

               Cow position:
               chrX:2314373-2314560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               57, 35
               

               Conread position:
               3-188
               

               Cow position:
               chrX:32747973-32747791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               22, 100
               

               Conread position:
               3-198
               

               Cow position:
               chrX:23136976-23136789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               71, 34
               

               Conread position:
               3-233
               

               Cow position:
               chrX:24170479-24170724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               22, 35
               

               Conread position:
               3-270
               

               Cow position:
               chrX:23498418-23498709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               215
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               77, 34
               

               Conread position:
               3-271
               

               Cow position:
               chrX:41941866-41941594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               56, 18
               

               Conread position:
               3-274
               

               Cow position:
               chrX:17956933-17956660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               54, 18
               

               Conread position:
               3-302
               

               Cow position:
               chrX:296639-296332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               9, 36
               

               Conread position:
               3-328
               

               Cow position:
               chrX:48071404-48071072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               55, 13
               

               Conread position:
               3-331
               

               Cow position:
               chrX:1466407-1466069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               55, 18
               

               Conread position:
               3-352
               

               Cow position:
               chrX:9650780-9651138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               250
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               23, 62
               

               Conread position:
               3-408
               

               Cow position:
               chrX:35885484-35885903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 36
               

               Conread position:
               3-443
               

               Cow position:
               chrX:34412094-34411631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 40
               

               Conread position:
               3-445
               

               Cow position:
               chrX:3580191-3579735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 35
               

               Conread position:
               3-475
               

               Cow position:
               chrX:39938293-39938758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 40
               

               Conread position:
               3-489
               

               Cow position:
               chrX:25815650-25816151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 24
               

               Conread position:
               3-491
               

               Cow position:
               chrX:45598364-45598861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               3-501
               

               Cow position:
               chrX:34377187-34376690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 100
               

               Conread position:
               5-232
               

               Cow position:
               chrX:19018582-19018825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               6, 35
               

               Conread position:
               5-232
               

               Cow position:
               chrX:38302057-38301815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               55, 32
               

               Conread position:
               5-369
               

               Cow position:
               chrX:20584555-20584193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 32
               

               Conread position:
               6-288
               

               Cow position:
               chrX:22392747-22393035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               115, 15
               

               Conread position:
               6-352
               

               Cow position:
               chrX:38654187-38654543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 34
               

               Conread position:
               6-443
               

               Cow position:
               chrX:38853453-38852988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 32
               

               Conread position:
               6-465
               

               Cow position:
               chrX:12979596-12980060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 10
               

               Conread position:
               7-184
               

               Cow position:
               chrX:41990882-41991071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               53, 29
               

               Conread position:
               7-406
               

               Cow position:
               chrX:4399359-4398954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 30
               

               Conread position:
               7-509
               

               Cow position:
               chrX:30337713-30338193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               348
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               53, 31
               

               Conread position:
               7-509
               

               Cow position:
               chrX:33854984-33855516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 31
               

               Conread position:
               8-186
               

               Cow position:
               chrX:20583898-20583727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               50, 13
               

               Conread position:
               8-188
               

               Cow position:
               chrX:11602246-11602424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               10, 29
               

               Conread position:
               8-277
               

               Cow position:
               chrX:42894162-42893879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               114, 29
               

               Conread position:
               8-280
               

               Cow position:
               chrX:19394794-19394511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               52, 13
               

               Conread position:
               8-330
               

               Cow position:
               chrX:29050482-29050156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 28
               

               Conread position:
               8-335
               

               Cow position:
               chrX:12095531-12095870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               52, 29
               

               Conread position:
               8-353
               

               Cow position:
               chrX:42927590-42927933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               52, 29
               

               Conread position:
               8-355
               

               Cow position:
               chrX:24332020-24331662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               50, 137
               

               Conread position:
               8-405
               

               Cow position:
               chrX:25207623-25208017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               273
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               51, 13
               

               Conread position:
               8-408
               

               Cow position:
               chrX:22387003-22387421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 29
               

               Conread position:
               8-453
               

               Cow position:
               chrX:36356343-36355907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 22
               

               Conread position:
               8-489
               

               Cow position:
               chrX:41674337-41673848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 29
               

               Conread position:
               8-502
               

               Cow position:
               chrX:12437042-12437504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 29
               

               Conread position:
               8-509
               

               Cow position:
               chrX:7351541-7351027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 29
               

               Conread position:
               8-509
               

               Cow position:
               chrX:11656318-11655804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 29
               

               Conread position:
               9-275
               

               Cow position:
               chrX:28940484-28940210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               16, 29
               

               Conread position:
               9-319
               

               Cow position:
               chrX:47345569-47345254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               45, 28
               

               Conread position:
               9-484
               

               Cow position:
               chrX:13177243-13177717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 30
               

               Conread position:
               9-509
               

               Cow position:
               chrX:42994834-42994339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 22
               

               Conread position:
               10-378
               

               Cow position:
               chrX:34314259-34313894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 27
               

               Conread position:
               10-407
               

               Cow position:
               chrX:6407786-6407376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 100
               

               Conread position:
               11-185
               

               Cow position:
               chrX:6480358-6480534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               27, 48
               

               Conread position:
               11-260
               

               Cow position:
               chrX:25412154-25411886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               46, 10
               

               Conread position:
               11-369
               

               Cow position:
               chrX:21986064-21986422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               261
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               47, 26
               

               Conread position:
               11-524
               

               Cow position:
               chrX:38094289-38094815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 26
               

               Conread position:
               12-329
               

               Cow position:
               chrX:42855700-42855365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 26
               

               Conread position:
               12-406
               

               Cow position:
               chrX:34792087-34792482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 25
               

               Conread position:
               12-460
               

               Cow position:
               chrX:22075031-22074574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 25
               

               Conread position:
               13-507
               

               Cow position:
               chrX:5637944-5638441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 24
               

               Conread position:
               16-185
               

               Cow position:
               chrX:45657703-45657878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               42, 21
               

               Conread position:
               16-188
               

               Cow position:
               chrX:8327137-8326963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               44, 21
               

               Conread position:
               16-188
               

               Cow position:
               chrX:42875441-42875271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               44, 21
               

               Conread position:
               16-230
               

               Cow position:
               chrX:16323783-16324006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               23, 42
               

               Conread position:
               16-233
               

               Cow position:
               chrX:1122315-1122538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               23, 41
               

               Conread position:
               16-247
               

               Cow position:
               chrX:38587613-38587853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               41, 21
               

               Conread position:
               16-252
               

               Cow position:
               chrX:3806910-3806670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               44, 21
               

               Conread position:
               16-302
               

               Cow position:
               chrX:25037224-25036924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               44, 20
               

               Conread position:
               16-312
               

               Cow position:
               chrX:1087916-1088209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               50, 21
               

               Conread position:
               16-352
               

               Cow position:
               chrX:29230239-29229896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               44, 21
               

               Conread position:
               16-443
               

               Cow position:
               chrX:29541996-29542427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 21
               

               Conread position:
               16-451
               

               Cow position:
               chrX:37780880-37781330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 21
               

               Conread position:
               16-486
               

               Cow position:
               chrX:23497465-23497915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 21
               

               Conread position:
               16-488
               

               Cow position:
               chrX:24365590-24366083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 21
               

               Conread position:
               16-509
               

               Cow position:
               chrX:6414264-6413771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 21
               

               Conread position:
               16-509
               

               Cow position:
               chrX:7695996-7695488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 22
               

               Conread position:
               16-509
               

               Cow position:
               chrX:37072618-37072131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 21
               

               Conread position:
               16-509
               

               Cow position:
               chrX:45429799-45430293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 16
               

               Conread position:
               16-512
               

               Cow position:
               chrX:35413826-35413352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 21
               

               Conread position:
               17-188
               

               Cow position:
               chrX:40649133-40648953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               43, 20
               

               Conread position:
               17-277
               

               Cow position:
               chrX:22284915-22284671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               17-359
               

               Cow position:
               chrX:26881331-26881688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 19
               

               Conread position:
               17-524
               

               Cow position:
               chrX:38218944-38218428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 20
               

               Conread position:
               18-188
               

               Cow position:
               chrX:23471638-23471807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               42, 20
               

               Conread position:
               18-195
               

               Cow position:
               chrX:14135905-14135729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               18-296
               

               Cow position:
               chrX:40108283-40108573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               42, 17
               

               Conread position:
               18-432
               

               Cow position:
               chrX:10251972-10252379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               291
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               18-474
               

               Cow position:
               chrX:27393788-27394254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 18
               

               Conread position:
               18-502
               

               Cow position:
               chrX:5017186-5017674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 19
               

               Conread position:
               18-507
               

               Cow position:
               chrX:9251933-9252447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 20
               

               Conread position:
               21-279
               

               Cow position:
               chrX:40531799-40532084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               39, 16
               

               Conread position:
               21-330
               

               Cow position:
               chrX:27261417-27261097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 16
               

               Conread position:
               21-346
               

               Cow position:
               chrX:13924088-13923764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               217
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               39, 16
               

               Conread position:
               21-446
               

               Cow position:
               chrX:9425535-9425953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               335, 16
               

               Conread position:
               21-508
               

               Cow position:
               chrX:45502362-45501874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 16
               

               Conread position:
               23-278
               

               Cow position:
               chrX:27074826-27075086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               37, 14
               

               Conread position:
               23-325
               

               Cow position:
               chrX:20881736-20882023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               37, 14
               

               Conread position:
               23-460
               

               Cow position:
               chrX:44397236-44396789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 13
               

               Conread position:
               23-474
               

               Cow position:
               chrX:38642467-38642020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 14
               

               Conread position:
               23-502
               

               Cow position:
               chrX:7278131-7277662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 19
               

               Conread position:
               24-516
               

               Cow position:
               chrX:34554948-34554448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 13
               

               Conread position:
               26-493
               

               Cow position:
               chrX:20152070-20151591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 11
               

               Conread position:
               28-190
               

               Cow position:
               chrX:31480186-31480028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               32, 9
               

               Conread position:
               28-369
               

               Cow position:
               chrX:40685109-40685461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 9
               

               Conread position:
               28-446
               

               Cow position:
               chrX:8869184-8869623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 9
               

               Conread position:
               28-509
               

               Cow position:
               chrX:40557438-40557951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 9
               

               Conread position:
               35-500
               

               Cow position:
               chrX:12309169-12309654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 221
               

               Conread position:
               37-185
               

               Cow position:
               chrX:46068549-46068697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               23, 74
               

               Conread position:
               38-245
               

               Cow position:
               chrX:29733376-29733599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               52, 16
               

               Conread position:
               38-330
               

               Cow position:
               chrX:918516-918818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               20, 64
               

               Conread position:
               38-337
               

               Cow position:
               chrX:40283334-40283027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               14, 213
               

               Conread position:
               38-338
               

               Cow position:
               chrX:31515384-31515070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               14, 48
               

               Conread position:
               38-475
               

               Cow position:
               chrX:9634979-9635422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 78
               

               Conread position:
               38-509
               

               Cow position:
               chrX:18694709-18695196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 225
               

               Conread position:
               38-509
               

               Cow position:
               chrX:35269069-35268615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 60
               

               Conread position:
               39-187
               

               Cow position:
               chrX:11589155-11589307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               21, 47
               

               Conread position:
               39-188
               

               Cow position:
               chrX:31983366-31983526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               39-240
               

               Cow position:
               chrX:23335763-23335974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               21, 95
               

               Conread position:
               39-240
               

               Cow position:
               chrX:29478934-29478722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               21, 44
               

               Conread position:
               39-240
               

               Cow position:
               chrX:39290567-39290357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               22, 65
               

               Conread position:
               39-253
               

               Cow position:
               chrX:16836082-16836303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               21, 64
               

               Conread position:
               39-279
               

               Cow position:
               chrX:24749299-24749047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               21, 47
               

               Conread position:
               39-282
               

               Cow position:
               chrX:11325896-11326143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               21, 52
               

               Conread position:
               39-284
               

               Cow position:
               chrX:4645702-4645957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               21, 72
               

               Conread position:
               39-293
               

               Cow position:
               chrX:4109397-4109136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               17, 62
               

               Conread position:
               39-318
               

               Cow position:
               chrX:22115102-22115396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               210
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               22, 81
               

               Conread position:
               39-325
               

               Cow position:
               chrX:40680827-40680525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 59
               

               Conread position:
               39-333
               

               Cow position:
               chrX:20168767-20168464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 56
               

               Conread position:
               39-335
               

               Cow position:
               chrX:34836860-34837150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               15, 51
               

               Conread position:
               39-338
               

               Cow position:
               chrX:10516466-10516157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               231
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               21, 72
               

               Conread position:
               39-369
               

               Cow position:
               chrX:41027372-41027027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 70
               

               Conread position:
               39-378
               

               Cow position:
               chrX:18204254-18204602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               244
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               19, 33
               

               Conread position:
               39-393
               

               Cow position:
               chrX:45977136-45976765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 69
               

               Conread position:
               39-397
               

               Cow position:
               chrX:45875602-45875239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               254
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               18, 216
               

               Conread position:
               39-406
               

               Cow position:
               chrX:37956057-37955666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 276
               

               Conread position:
               39-410
               

               Cow position:
               chrX:4278907-4279290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               265
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               18, 69
               

               Conread position:
               39-417
               

               Cow position:
               chrX:32821252-32820847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 232
               

               Conread position:
               39-420
               

               Cow position:
               chrX:35382830-35383205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               280
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               21, 49
               

               Conread position:
               39-436
               

               Cow position:
               chrX:1499866-1499468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               39-438
               

               Cow position:
               chrX:29544674-29545083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 60
               

               Conread position:
               39-454
               

               Cow position:
               chrX:36283552-36283125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 99
               

               Conread position:
               39-459
               

               Cow position:
               chrX:28013228-28013665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               291
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               18, 230
               

               Conread position:
               39-464
               

               Cow position:
               chrX:42380900-42381330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 62
               

               Conread position:
               39-466
               

               Cow position:
               chrX:9201755-9201315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 60
               

               Conread position:
               39-470
               

               Cow position:
               chrX:38549658-38549212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 47
               

               Conread position:
               39-471
               

               Cow position:
               chrX:4768940-4768513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 62
               

               Conread position:
               39-484
               

               Cow position:
               chrX:44055015-44054552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 53
               

               Conread position:
               39-487
               

               Cow position:
               chrX:14973545-14973985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 22
               

               Conread position:
               39-493
               

               Cow position:
               chrX:27508812-27509279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 109
               

               Conread position:
               39-496
               

               Cow position:
               chrX:4632642-4633114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 212
               

               Conread position:
               39-501
               

               Cow position:
               chrX:25035169-25035653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 217
               

               Conread position:
               39-501
               

               Cow position:
               chrX:30133112-30133591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 67
               

               Conread position:
               39-502
               

               Cow position:
               chrX:31489733-31489244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 72
               

               Conread position:
               39-509
               

               Cow position:
               chrX:31436681-31436205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 64
               

               Conread position:
               39-509
               

               Cow position:
               chrX:38964309-38963837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 22
               

               Conread position:
               39-509
               

               Cow position:
               chrX:42246969-42247451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 72
               

               Conread position:
               39-516
               

               Cow position:
               chrX:8731306-8730797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 72
               

               Conread position:
               39-524
               

               Cow position:
               chrX:1615846-1616341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 47
               

               Conread position:
               39-524
               

               Cow position:
               chrX:34238935-34238431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 75
               

               Conread position:
               39-524
               

               Cow position:
               chrX:43115361-43114883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 70
               

               Conread position:
               40-413
               

               Cow position:
               chrX:9770475-9770863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               250
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               20, 146
               

               Conread position:
               40-443
               

               Cow position:
               chrX:40035228-40035654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 51
               

               Conread position:
               40-471
               

               Cow position:
               chrX:6690054-6690485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 79
               

               Conread position:
               40-500
               

               Cow position:
               chrX:13868915-13868431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 66
               

               Conread position:
               40-509
               

               Cow position:
               chrX:14883746-14884239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 68
               

               Conread position:
               40-509
               

               Cow position:
               chrX:20887438-20887919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 47
               

               Conread position:
               43-464
               

               Cow position:
               chrX:35543092-35542661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 78
               

               Conread position:
               43-465
               

               Cow position:
               chrX:22822263-22821816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 226
               

               Conread position:
               43-468
               

               Cow position:
               chrX:46532282-46532743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               43-472
               

               Cow position:
               chrX:17795188-17794747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 48
               

               Conread position:
               43-509
               

               Cow position:
               chrX:21593499-21593011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 219
               

               Conread position:
               43-509
               

               Cow position:
               chrX:26493215-26492727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 211
               

               Conread position:
               43-509
               

               Cow position:
               chrX:31294361-31294815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 61
               

               Conread position:
               44-283
               

               Cow position:
               chrX:48120998-48121243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               12, 53
               

               Conread position:
               45-500
               

               Cow position:
               chrX:37489930-37489466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 11
               

               Conread position:
               46-244
               

               Cow position:
               chrX:14985960-14986157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               11, 30
               

               Conread position:
               49-335
               

               Cow position:
               chrX:47246562-47246843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               132, 72
               

               Conread position:
               49-444
               

               Cow position:
               chrX:27175197-27174785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 58
               

               Conread position:
               49-454
               

               Cow position:
               chrX:29601632-29602053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 7
               

               Conread position:
               49-474
               

               Cow position:
               chrX:23513810-23514258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 7
               

               Conread position:
               49-474
               

               Cow position:
               chrX:34543983-34543547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 58
               

               Conread position:
               49-488
               

               Cow position:
               chrX:28877969-28878416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               49-500
               

               Cow position:
               chrX:31250587-31250125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 30
               

               Conread position:
               49-507
               

               Cow position:
               chrX:8900216-8899751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 7
               

               Conread position:
               49-524
               

               Cow position:
               chrX:12250012-12249511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 7
               

               Conread position:
               50-412
               

               Cow position:
               chrX:47186130-47186498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 5
               

               Conread position:
               50-466
               

               Cow position:
               chrX:36976150-36975717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 38
               

               Conread position:
               51-475
               

               Cow position:
               chrX:34662649-34663080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 89
               

               Conread position:
               53-509
               

               Cow position:
               chrX:46770768-46771247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 195
               

               Conread position:
               54-188
               

               Cow position:
               chrX:26692413-26692270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               55-413
               

               Cow position:
               chrX:31252600-31252239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 52
               

               Conread position:
               55-504
               

               Cow position:
               chrX:34503120-34502653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 197
               

               Conread position:
               55-509
               

               Cow position:
               chrX:11614876-11614446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 11
               

               Conread position:
               55-509
               

               Cow position:
               chrX:45968338-45967887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 44
               

               Conread position:
               56-252
               

               Cow position:
               chrX:20677956-20678152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               130, 49
               

               Conread position:
               56-256
               

               Cow position:
               chrX:42449822-42450033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               66, 51
               

               Conread position:
               56-275
               

               Cow position:
               chrX:23188598-23188813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               131, 45
               

               Conread position:
               56-279
               

               Cow position:
               chrX:18964634-18964865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 200
               

               Conread position:
               56-293
               

               Cow position:
               chrX:44339129-44339378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               56-340
               

               Cow position:
               chrX:21328105-21327802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               34, 74
               

               Conread position:
               56-350
               

               Cow position:
               chrX:4991833-4992127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               66, 111
               

               Conread position:
               56-391
               

               Cow position:
               chrX:5679739-5680087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               253
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               66, 54
               

               Conread position:
               56-392
               

               Cow position:
               chrX:27228320-27227966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 45
               

               Conread position:
               56-410
               

               Cow position:
               chrX:169350-169701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 204
               

               Conread position:
               56-474
               

               Cow position:
               chrX:44961945-44961507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 205
               

               Conread position:
               56-509
               

               Cow position:
               chrX:16762959-16762497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 28
               

               Conread position:
               56-509
               

               Cow position:
               chrX:23563599-23564072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 201
               

               Conread position:
               57-180
               

               Cow position:
               chrX:24633884-24633762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               101
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               65, 30
               

               Conread position:
               57-239
               

               Cow position:
               chrX:47079818-47079626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               57-256
               

               Cow position:
               chrX:42282767-42282559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               65, 41
               

               Conread position:
               57-319
               

               Cow position:
               chrX:39220276-39220000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               35, 201
               

               Conread position:
               57-398
               

               Cow position:
               chrX:41068910-41068564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 37
               

               Conread position:
               57-435
               

               Cow position:
               chrX:4515878-4515467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 61
               

               Conread position:
               57-503
               

               Cow position:
               chrX:10831291-10831781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 101
               

               Conread position:
               57-509
               

               Cow position:
               chrX:13647594-13648059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 50
               

               Conread position:
               57-509
               

               Cow position:
               chrX:28865814-28866264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 50
               

               Conread position:
               57-509
               

               Cow position:
               chrX:34222903-34222474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 50
               

               Conread position:
               57-509
               

               Cow position:
               chrX:34532708-34532256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 53
               

               Conread position:
               57-509
               

               Cow position:
               chrX:42087018-42086587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 50
               

               Conread position:
               57-512
               

               Cow position:
               chrX:5118308-5118760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 232
               

               Conread position:
               57-512
               

               Cow position:
               chrX:30922362-30921907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               306
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               66, 148
               

               Conread position:
               63-474
               

               Cow position:
               chrX:16416687-16416268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 49
               

               Conread position:
               68-474
               

               Cow position:
               chrX:4043677-4044090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 160
               

               Conread position:
               69-318
               

               Cow position:
               chrX:23113461-23113199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               117, 13
               

               Conread position:
               77-475
               

               Cow position:
               chrX:43568085-43567698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 21
               

               Conread position:
               78-302
               

               Cow position:
               chrX:6463770-6463548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               44, 119
               

               Conread position:
               81-296
               

               Cow position:
               chrX:2003705-2003933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               24, 168
               

               Conread position:
               81-365
               

               Cow position:
               chrX:39415202-39415493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               41, 11
               

               Conread position:
               81-443
               

               Cow position:
               chrX:47046347-47046728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               266
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               9, 57
               

               Conread position:
               81-454
               

               Cow position:
               chrX:1503494-1503119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 11
               

               Conread position:
               82-451
               

               Cow position:
               chrX:29121213-29120841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 176
               

               Conread position:
               82-474
               

               Cow position:
               chrX:11856594-11856189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 16
               

               Conread position:
               82-509
               

               Cow position:
               chrX:30543116-30543557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 19
               

               Conread position:
               83-392
               

               Cow position:
               chrX:33590881-33590570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               35, 18
               

               Conread position:
               83-403
               

               Cow position:
               chrX:6259985-6260323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               95, 322
               

               Conread position:
               84-357
               

               Cow position:
               chrX:5679408-5679684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               211
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               38, 11
               

               Conread position:
               84-378
               

               Cow position:
               chrX:38728896-38728600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               116, 35
               

               Conread position:
               84-502
               

               Cow position:
               chrX:43527673-43527235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 10
               

               Conread position:
               85-304
               

               Cow position:
               chrX:25788746-25788961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               145, 12
               

               Conread position:
               85-368
               

               Cow position:
               chrX:7710372-7710672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               222
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               8, 167
               

               Conread position:
               85-466
               

               Cow position:
               chrX:6278331-6278738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               86-509
               

               Cow position:
               chrX:14599696-14599257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 45
               

               Conread position:
               87-208
               

               Cow position:
               chrX:16481407-16481532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               99
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               87-266
               

               Cow position:
               chrX:20743766-20743575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               35, 22
               

               Conread position:
               87-318
               

               Cow position:
               chrX:41270825-41271077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               87-331
               

               Cow position:
               chrX:37129434-37129177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               21, 227
               

               Conread position:
               87-342
               

               Cow position:
               chrX:16348408-16348673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               87-367
               

               Cow position:
               chrX:11084902-11085185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 74
               

               Conread position:
               87-369
               

               Cow position:
               chrX:9365511-9365805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 174
               

               Conread position:
               87-383
               

               Cow position:
               chrX:616103-616407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 22
               

               Conread position:
               87-412
               

               Cow position:
               chrX:29680097-29680438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 168
               

               Conread position:
               87-423
               

               Cow position:
               chrX:42235362-42235722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 28
               

               Conread position:
               87-425
               

               Cow position:
               chrX:23785811-23785463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               269
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               22, 79
               

               Conread position:
               87-426
               

               Cow position:
               chrX:43730061-43730406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 128
               

               Conread position:
               87-451
               

               Cow position:
               chrX:37910607-37910235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 197
               

               Conread position:
               87-468
               

               Cow position:
               chrX:13382488-13382090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               87-474
               

               Cow position:
               chrX:618851-619248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 31
               

               Conread position:
               87-508
               

               Cow position:
               chrX:27516681-27516259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 69
               

               Conread position:
               87-509
               

               Cow position:
               chrX:34192819-34192406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 79
               

               Conread position:
               87-509
               

               Cow position:
               chrX:34402170-34401722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 152
               

               Conread position:
               87-509
               

               Cow position:
               chrX:38226945-38227365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 61
               

               Conread position:
               87-509
               

               Cow position:
               chrX:40269657-40269201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               88-228
               

               Cow position:
               chrX:27667588-27667443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               88-240
               

               Cow position:
               chrX:18046558-18046399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               34, 66
               

               Conread position:
               88-504
               

               Cow position:
               chrX:17726138-17725708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 366
               

               Conread position:
               89-293
               

               Cow position:
               chrX:32977923-32978131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               173
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               20, 157
               

               Conread position:
               89-414
               

               Cow position:
               chrX:45099283-45098932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               242
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               96, 28
               

               Conread position:
               89-501
               

               Cow position:
               chrX:35387769-35388174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               282, 91
               

               Conread position:
               89-502
               

               Cow position:
               chrX:38006609-38007036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 171
               

               Conread position:
               89-509
               

               Cow position:
               chrX:24287771-24288188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 164
               

               Conread position:
               90-240
               

               Cow position:
               chrX:42506073-42506229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               90-324
               

               Cow position:
               chrX:18272901-18273143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               54, 41
               

               Conread position:
               90-335
               

               Cow position:
               chrX:29549392-29549644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               32, 25
               

               Conread position:
               90-407
               

               Cow position:
               chrX:46433652-46433310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               19, 164
               

               Conread position:
               90-471
               

               Cow position:
               chrX:45113776-45113391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 28
               

               Conread position:
               90-509
               

               Cow position:
               chrX:878222-878643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 17
               

               Conread position:
               90-509
               

               Cow position:
               chrX:31442670-31443096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 17
               

               Conread position:
               90-524
               

               Cow position:
               chrX:7718992-7718566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 82
               

               Conread position:
               91-296
               

               Cow position:
               chrX:31626820-31627038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               31, 16
               

               Conread position:
               91-369
               

               Cow position:
               chrX:23562016-23561746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               9, 157
               

               Conread position:
               91-509
               

               Cow position:
               chrX:42171139-42171571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 11
               

               Conread position:
               92-347
               

               Cow position:
               chrX:47657529-47657276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               20, 73
               

               Conread position:
               92-474
               

               Cow position:
               chrX:41884258-41884658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 13
               

               Conread position:
               92-475
               

               Cow position:
               chrX:9416526-9416934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 131
               

               Conread position:
               92-507
               

               Cow position:
               chrX:5872475-5872043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 158
               

               Conread position:
               92-509
               

               Cow position:
               chrX:8797407-8796975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 406
               

               Conread position:
               92-509
               

               Cow position:
               chrX:32170731-32171157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 212
               

               Conread position:
               92-525
               

               Cow position:
               chrX:161568-161137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 8
               

               Conread position:
               94-330
               

               Cow position:
               chrX:25282881-25283105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               14, 100
               

               Conread position:
               94-472
               

               Cow position:
               chrX:17888267-17888644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 161
               

               Conread position:
               94-501
               

               Cow position:
               chrX:20697455-20697870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 159
               

               Conread position:
               94-502
               

               Cow position:
               chrX:11717627-11718048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 235
               

               Conread position:
               94-508
               

               Cow position:
               chrX:28134494-28134075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 70
               

               Conread position:
               95-296
               

               Cow position:
               chrX:19469353-19469563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               25, 172
               

               Conread position:
               96-299
               

               Cow position:
               chrX:27511582-27511367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               26, 158
               

               Conread position:
               96-369
               

               Cow position:
               chrX:42873539-42873262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               26, 155
               

               Conread position:
               96-369
               

               Cow position:
               chrX:48385219-48385490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               95, 32
               

               Conread position:
               96-454
               

               Cow position:
               chrX:23092027-23091661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 184
               

               Conread position:
               96-503
               

               Cow position:
               chrX:24424249-24424662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 116
               

               Conread position:
               97-509
               

               Cow position:
               chrX:7572055-7571631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 8
               

               Conread position:
               99-297
               

               Cow position:
               chrX:22914891-22915094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               23, 54
               

               Conread position:
               99-357
               

               Cow position:
               chrX:13853766-13853504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               75, 18
               

               Conread position:
               99-362
               

               Cow position:
               chrX:23562783-23562512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               206
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               25, 154
               

               Conread position:
               99-425
               

               Cow position:
               chrX:31312180-31311835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 199
               

               Conread position:
               99-442
               

               Cow position:
               chrX:4825686-4826035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               254
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               16, 146
               

               Conread position:
               99-454
               

               Cow position:
               chrX:46072668-46073042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               99-501
               

               Cow position:
               chrX:41238204-41238630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 146
               

               Conread position:
               99-508
               

               Cow position:
               chrX:126916-126517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 214
               

               Conread position:
               99-508
               

               Cow position:
               chrX:45414156-45414574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 139
               

               Conread position:
               100-237
               

               Cow position:
               chrX:1337142-1337278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               115
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               21, 101
               

               Conread position:
               100-305
               

               Cow position:
               chrX:15820744-15820531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               22, 144
               

               Conread position:
               100-369
               

               Cow position:
               chrX:41871214-41870943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               89, 200
               

               Conread position:
               100-400
               

               Cow position:
               chrX:14275593-14275901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               22, 213
               

               Conread position:
               100-474
               

               Cow position:
               chrX:33493923-33493535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 227
               

               Conread position:
               100-514
               

               Cow position:
               chrX:33640125-33639685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 132
               

               Conread position:
               100-524
               

               Cow position:
               chrX:15007000-15007441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 160
               

               Conread position:
               101-317
               

               Cow position:
               chrX:4152882-4153113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               21, 33
               

               Conread position:
               102-465
               

               Cow position:
               chrX:5900610-5900226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 139
               

               Conread position:
               103-502
               

               Cow position:
               chrX:11082475-11082881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 193
               

               Conread position:
               104-469
               

               Cow position:
               chrX:32623716-32623348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 220
               

               Conread position:
               104-509
               

               Cow position:
               chrX:37232550-37232137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 155
               

               Conread position:
               105-443
               

               Cow position:
               chrX:45846243-45845887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 107
               

               Conread position:
               105-490
               

               Cow position:
               chrX:11073047-11073447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 10
               

               Conread position:
               107-478
               

               Cow position:
               chrX:45174994-45174600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               271
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               8, 218
               

               Conread position:
               108-509
               

               Cow position:
               chrX:29289720-29289301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 145
               

               Conread position:
               109-281
               

               Cow position:
               chrX:29553426-29553243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               13, 169
               

               Conread position:
               109-435
               

               Cow position:
               chrX:43779711-43780053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 35
               

               Conread position:
               110-460
               

               Cow position:
               chrX:4865370-4865025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               249
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               93, 165
               

               Conread position:
               110-463
               

               Cow position:
               chrX:10959255-10959631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 148
               

               Conread position:
               110-466
               

               Cow position:
               chrX:15815218-15814865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 21
               

               Conread position:
               111-288
               

               Cow position:
               chrX:19943097-19943286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               11, 60
               

               Conread position:
               111-474
               

               Cow position:
               chrX:37119731-37119359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 225
               

               Conread position:
               112-232
               

               Cow position:
               chrX:37665826-37665697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               117-331
               

               Cow position:
               chrX:19162211-19162432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               118-350
               

               Cow position:
               chrX:29194359-29194123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               182
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               21, 58
               

               Conread position:
               118-449
               

               Cow position:
               chrX:39126455-39126123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 133
               

               Conread position:
               118-454
               

               Cow position:
               chrX:6488704-6488366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 34
               

               Conread position:
               118-455
               

               Cow position:
               chrX:37574969-37574635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 129
               

               Conread position:
               118-468
               

               Cow position:
               chrX:30420823-30421173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               253, 71
               

               Conread position:
               118-471
               

               Cow position:
               chrX:17662469-17662834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 124
               

               Conread position:
               118-474
               

               Cow position:
               chrX:6563648-6563272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               265
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               118-474
               

               Cow position:
               chrX:11454920-11455292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 334
               

               Conread position:
               118-487
               

               Cow position:
               chrX:35288784-35288407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 181
               

               Conread position:
               118-509
               

               Cow position:
               chrX:8925827-8925431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 10
               

               Conread position:
               119-280
               

               Cow position:
               chrX:10305223-10305390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               71, 124
               

               Conread position:
               119-281
               

               Cow position:
               chrX:12082196-12082367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               70, 150
               

               Conread position:
               119-287
               

               Cow position:
               chrX:13359301-13359467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               81, 122
               

               Conread position:
               119-289
               

               Cow position:
               chrX:29115834-29115661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               12, 124
               

               Conread position:
               119-299
               

               Cow position:
               chrX:46429691-46429881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               69, 177
               

               Conread position:
               119-340
               

               Cow position:
               chrX:11851551-11851770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               124, 29
               

               Conread position:
               119-350
               

               Cow position:
               chrX:23939921-23940136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               98, 46
               

               Conread position:
               119-368
               

               Cow position:
               chrX:48044388-48044641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               69, 17
               

               Conread position:
               119-369
               

               Cow position:
               chrX:19273579-19273853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               119-369
               

               Cow position:
               chrX:37986353-37986103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               187
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               90, 49
               

               Conread position:
               119-398
               

               Cow position:
               chrX:36514764-36515047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               55, 215
               

               Conread position:
               119-427
               

               Cow position:
               chrX:38066327-38066631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               224
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               71, 146
               

               Conread position:
               119-448
               

               Cow position:
               chrX:7162184-7161858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 156
               

               Conread position:
               119-454
               

               Cow position:
               chrX:6265471-6265806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 121
               

               Conread position:
               119-468
               

               Cow position:
               chrX:47054397-47054761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 121
               

               Conread position:
               119-470
               

               Cow position:
               chrX:39558221-39558584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 42
               

               Conread position:
               119-473
               

               Cow position:
               chrX:11938805-11939163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 128
               

               Conread position:
               119-474
               

               Cow position:
               chrX:47248650-47249028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               37, 157
               

               Conread position:
               119-475
               

               Cow position:
               chrX:1514291-1514645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 124
               

               Conread position:
               119-486
               

               Cow position:
               chrX:678446-678820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 100
               

               Conread position:
               119-495
               

               Cow position:
               chrX:19690343-19689957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 164
               

               Conread position:
               119-500
               

               Cow position:
               chrX:917240-917636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 104
               

               Conread position:
               119-508
               

               Cow position:
               chrX:35224424-35224028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 132
               

               Conread position:
               119-508
               

               Cow position:
               chrX:47481924-47481524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 126
               

               Conread position:
               119-509
               

               Cow position:
               chrX:10411856-10412261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 128
               

               Conread position:
               119-509
               

               Cow position:
               chrX:35273492-35273069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 199
               

               Conread position:
               119-509
               

               Cow position:
               chrX:41123187-41122797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 134
               

               Conread position:
               121-474
               

               Cow position:
               chrX:22624602-22624241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 185
               

               Conread position:
               121-502
               

               Cow position:
               chrX:5046792-5047165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               269
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               180, 12
               

               Conread position:
               121-502
               

               Cow position:
               chrX:17542084-17541696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 22
               

               Conread position:
               122-397
               

               Cow position:
               chrX:22453973-22454252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               67, 129
               

               Conread position:
               122-437
               

               Cow position:
               chrX:18216392-18216074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               222
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               7, 15
               

               Conread position:
               122-454
               

               Cow position:
               chrX:9041119-9041449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               58, 53
               

               Conread position:
               122-465
               

               Cow position:
               chrX:32431749-32431396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               248
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               66, 138
               

               Conread position:
               122-472
               

               Cow position:
               chrX:11562271-11561916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               255
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               7, 22
               

               Conread position:
               122-474
               

               Cow position:
               chrX:42011406-42011040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               258
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               65, 106
               

               Conread position:
               122-475
               

               Cow position:
               chrX:19930768-19930416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 8
               

               Conread position:
               122-502
               

               Cow position:
               chrX:17964397-17964783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               267
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               11, 7
               

               Conread position:
               122-502
               

               Cow position:
               chrX:25419029-25419428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 11
               

               Conread position:
               122-525
               

               Cow position:
               chrX:20801894-20801487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 144
               

               Conread position:
               126-411
               

               Cow position:
               chrX:38999968-38999667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               61, 7
               

               Conread position:
               126-509
               

               Cow position:
               chrX:25338307-25337902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 7
               

               Conread position:
               127-474
               

               Cow position:
               chrX:43049451-43049102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 64
               

               Conread position:
               128-369
               

               Cow position:
               chrX:21566526-21566272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               193
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               59, 107
               

               Conread position:
               129-509
               

               Cow position:
               chrX:7646369-7645983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 117
               

               Conread position:
               130-388
               

               Cow position:
               chrX:48570871-48571146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               130-401
               

               Cow position:
               chrX:44837093-44836828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               73, 174
               

               Conread position:
               130-433
               

               Cow position:
               chrX:47300786-47301102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               223
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               54, 74
               

               Conread position:
               130-434
               

               Cow position:
               chrX:45149285-45148975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               88, 73
               

               Conread position:
               130-434
               

               Cow position:
               chrX:47302760-47303079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               54, 121
               

               Conread position:
               130-474
               

               Cow position:
               chrX:26625554-26625917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 168
               

               Conread position:
               130-491
               

               Cow position:
               chrX:48652604-48652988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               272
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               54, 133
               

               Conread position:
               130-502
               

               Cow position:
               chrX:45403708-45404102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 109
               

               Conread position:
               130-507
               

               Cow position:
               chrX:45089563-45089164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               275
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               88, 75
               

               Conread position:
               130-509
               

               Cow position:
               chrX:46722617-46723016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 136
               

               Conread position:
               130-509
               

               Cow position:
               chrX:48194918-48195316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               130-524
               

               Cow position:
               chrX:44736883-44737281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               263
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               199, 77
               

               Conread position:
               132-502
               

               Cow position:
               chrX:38936815-38936431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 129
               

               Conread position:
               134-464
               

               Cow position:
               chrX:16789749-16790067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 66
               

               Conread position:
               136-305
               

               Cow position:
               chrX:41111827-41111655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               36, 118
               

               Conread position:
               136-441
               

               Cow position:
               chrX:45993340-45993006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               35, 9
               

               Conread position:
               136-450
               

               Cow position:
               chrX:41560155-41560455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               58, 27
               

               Conread position:
               136-474
               

               Cow position:
               chrX:21004795-21004444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 152
               

               Conread position:
               136-502
               

               Cow position:
               chrX:28787460-28787099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               49, 20
               

               Conread position:
               142-472
               

               Cow position:
               chrX:27680503-27680165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 164
               

               Conread position:
               144-474
               

               Cow position:
               chrX:7509242-7508897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               144-509
               

               Cow position:
               chrX:47967710-47967325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 248
               

               Conread position:
               145-479
               

               Cow position:
               chrX:44873459-44873795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               42, 218
               

               Conread position:
               147-368
               

               Cow position:
               chrX:27685349-27685118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               179
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               22, 110
               

               Conread position:
               149-500
               

               Cow position:
               chrX:38439570-38439207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               158-330
               

               Cow position:
               chrX:1572050-1572228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               29, 95
               

               Conread position:
               161-366
               

               Cow position:
               chrX:16055293-16055084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               25, 101
               

               Conread position:
               161-502
               

               Cow position:
               chrX:25238256-25237910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 109
               

               Conread position:
               163-432
               

               Cow position:
               chrX:36961718-36961438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 83
               

               Conread position:
               168-365
               

               Cow position:
               chrX:19003372-19003174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               163
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               24, 76
               

               Conread position:
               183-400
               

               Cow position:
               chrX:41991992-41992207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               149, 11
               

               Conread position:
               183-509
               

               Cow position:
               chrX:34270457-34270141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 95
               

               Conread position:
               183-509
               

               Cow position:
               chrX:42461689-42462023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 64
               

               Conread position:
               184-449
               

               Cow position:
               chrX:10123299-10123562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               147, 70
               

               Conread position:
               186-308
               

               Cow position:
               chrX:17301254-17301378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               186-336
               

               Cow position:
               chrX:48201346-48201199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               186-344
               

               Cow position:
               chrX:29487956-29488107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               186-408
               

               Cow position:
               chrX:22466007-22465782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               24, 146
               

               Conread position:
               186-427
               

               Cow position:
               chrX:37541170-37540932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               141, 28
               

               Conread position:
               186-450
               

               Cow position:
               chrX:8070647-8070916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               145, 55
               

               Conread position:
               186-467
               

               Cow position:
               chrX:12405329-12405602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 198
               

               Conread position:
               186-468
               

               Cow position:
               chrX:11589536-11589826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 59
               

               Conread position:
               186-471
               

               Cow position:
               chrX:27771913-27772193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 59
               

               Conread position:
               186-472
               

               Cow position:
               chrX:41166910-41167202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               186-474
               

               Cow position:
               chrX:9855350-9855060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 93
               

               Conread position:
               186-474
               

               Cow position:
               chrX:9954191-9953901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 93
               

               Conread position:
               186-474
               

               Cow position:
               chrX:39071746-39071457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               143, 61
               

               Conread position:
               186-474
               

               Cow position:
               chrX:40692699-40692978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 119
               

               Conread position:
               186-475
               

               Cow position:
               chrX:24259529-24259819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               47, 65
               

               Conread position:
               186-494
               

               Cow position:
               chrX:18293974-18293672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               54, 73
               

               Conread position:
               186-500
               

               Cow position:
               chrX:11675118-11674792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               232
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               52, 126
               

               Conread position:
               186-501
               

               Cow position:
               chrX:19188983-19188669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 47
               

               Conread position:
               186-502
               

               Cow position:
               chrX:12018344-12018007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 59
               

               Conread position:
               186-502
               

               Cow position:
               chrX:25232645-25232318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 65
               

               Conread position:
               186-503
               

               Cow position:
               chrX:28845885-28845575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 162
               

               Conread position:
               186-509
               

               Cow position:
               chrX:6234397-6234710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 262
               

               Conread position:
               186-509
               

               Cow position:
               chrX:7053680-7054010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               137, 62
               

               Conread position:
               186-509
               

               Cow position:
               chrX:35042270-35041947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               240
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               145, 53
               

               Conread position:
               186-509
               

               Cow position:
               chrX:42875035-42874703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 59
               

               Conread position:
               186-509
               

               Cow position:
               chrX:48243414-48243727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 52
               

               Conread position:
               187-442
               

               Cow position:
               chrX:29876024-29876274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               171, 10
               
UCSC Genome Browser
               Conread position:
               187-475
               

               Cow position:
               chrX:17630752-17631043 (view  custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 126
               
UCSC Genome Browser
               
               
               
Conread position: 187-484

               
               
               
Cow position: chrX:20710125-20709822 (view  custom track)

               
               
               
Alignm length: 307

               
               
               
Alignm identity: 229

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 184, 23
UCSC Genome Browser
               
               
               
Conread position: 187-509

               
               
               
Cow position: chrX:35681393-35681060 (view  custom track)

               
               
               
Alignm length: 339

               
               
               
Alignm identity: 264

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 63, 55

               
               
               Conread position:188-451
               
               
               Cow position:chrX:28929892-28929625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:188-509
               
               
               Cow position:chrX:17498135-17497821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 79

               
               
               Conread position:190-421
               
               
               Cow position:chrX:48035473-48035241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):180, 45

               
               
               Conread position:190-453
               
               
               Cow position:chrX:13785312-13785586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 191

               
               
               Conread position:190-474
               
               
               Cow position:chrX:26875833-26876121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 240

               
               
               Conread position:190-501
               
               
               Cow position:chrX:33466656-33466350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 44

               
               
               Conread position:190-504
               
               
               Cow position:chrX:15139499-15139812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 52

               
               
               Conread position:190-509
               
               
               Cow position:chrX:28105966-28105647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 53

               
               
               Conread position:190-510
               
               
               Cow position:chrX:47191359-47191671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:192-407
               
               
               Cow position:chrX:37750208-37750426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:193-330
               
               
               Cow position:chrX:42789665-42789530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:193-468
               
               
               Cow position:chrX:41199153-41198870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:193-502
               
               
               Cow position:chrX:16289514-16289830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):134, 9

               
               
               Conread position:194-509
               
               
               Cow position:chrX:34991080-34990766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 94

               
               
               Conread position:195-346
               
               
               Cow position:chrX:35848607-35848454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:195-348
               
               
               Cow position:chrX:8326802-8326651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:195-352
               
               
               Cow position:chrX:20790957-20790808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:195-368
               
               
               Cow position:chrX:36723046-36723220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:195-410
               
               
               Cow position:chrX:29563326-29563546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:195-434
               
               
               Cow position:chrX:4091683-4091448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):125, 41

               
               
               Conread position:195-437
               
               
               Cow position:chrX:28835859-28836103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):56, 113

               
               
               Conread position:195-459
               
               
               Cow position:chrX:29509395-29509669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:195-500
               
               
               Cow position:chrX:40648029-40647712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 52

               
               
               Conread position:195-509
               
               
               Cow position:chrX:14925043-14924725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 20

               
               
               Conread position:195-509
               
               
               Cow position:chrX:18999931-18999623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):60, 41

               
               
               Conread position:196-465
               
               
               Cow position:chrX:14900688-14900952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 46

               
               
               Conread position:197-472
               
               
               Cow position:chrX:32127951-32128218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 44

               
               
               Conread position:198-501
               
               
               Cow position:chrX:19015476-19015175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:198-501
               
               
               Cow position:chrX:47379427-47379734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 181

               
               
               Conread position:198-502
               
               
               Cow position:chrX:12116087-12115773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 279

               
               
               Conread position:200-442
               
               
               Cow position:chrX:26286019-26285772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:200-459
               
               
               Cow position:chrX:4750265-4750523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):41, 57

               
               
               Conread position:202-509
               
               
               Cow position:chrX:28098151-28097850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:203-390
               
               
               Cow position:chrX:35969051-35969238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):80, 43

               
               
               Conread position:203-403
               
               
               Cow position:chrX:14003611-14003813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):167, 47

               
               
               Conread position:203-427
               
               
               Cow position:chrX:45875033-45874806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):129, 53

               
               
               Conread position:203-438
               
               
               Cow position:chrX:17908253-17908487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 44

               
               
               Conread position:203-474
               
               
               Cow position:chrX:23970414-23970149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 80

               
               
               Conread position:203-475
               
               
               Cow position:chrX:30832817-30833079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 39

               
               
               Conread position:203-488
               
               
               Cow position:chrX:41743949-41743659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:203-509
               
               
               Cow position:chrX:9997299-9997606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 43

               
               
               Conread position:204-450
               
               
               Cow position:chrX:40567632-40567383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:204-471
               
               
               Cow position:chrX:40116451-40116188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:204-507
               
               
               Cow position:chrX:11581967-11581661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 70

               
               
               Conread position:204-507
               
               
               Cow position:chrX:42585044-42585341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):167, 74

               
               
               Conread position:204-509
               
               
               Cow position:chrX:27442523-27442827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:205-312
               
               
               Cow position:chrX:21004849-21004957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:205-464
               
               
               Cow position:chrX:37048548-37048811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 26

               
               
               Conread position:205-470
               
               
               Cow position:chrX:2383518-2383253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 37

               
               
               Conread position:208-474
               
               
               Cow position:chrX:44053290-44053018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:211-468
               
               
               Cow position:chrX:20752281-20752029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:212-445
               
               
               Cow position:chrX:47159497-47159721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:212-509
               
               
               Cow position:chrX:48800560-48800262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 36

               
               
               Conread position:213-501
               
               
               Cow position:chrX:41790418-41790707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:213-502
               
               
               Cow position:chrX:44834780-44835084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:213-503
               
               
               Cow position:chrX:3653786-3653494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:214-500
               
               
               Cow position:chrX:488518-488224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:216-507
               
               
               Cow position:chrX:20583044-20582757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 64

               
               
               Conread position:218-352
               
               
               Cow position:chrX:32747703-32747570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 30

               
               
               Conread position:218-443
               
               
               Cow position:chrX:47454153-47453918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:222-350
               
               
               Cow position:chrX:10079431-10079560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:224-461
               
               
               Cow position:chrX:13245612-13245364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:224-502
               
               
               Cow position:chrX:45043588-45043290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:225-476
               
               
               Cow position:chrX:35284638-35284375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:225-509
               
               
               Cow position:chrX:20945584-20945293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):10, 176

               
               
               Conread position:228-421
               
               
               Cow position:chrX:31256877-31256681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:230-475
               
               
               Cow position:chrX:38840898-38840647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:231-424
               
               
               Cow position:chrX:1505718-1505523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:232-347
               
               
               Cow position:chrX:32870447-32870556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:232-417
               
               
               Cow position:chrX:45759400-45759215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):17, 135

               
               
               Conread position:232-475
               
               
               Cow position:chrX:42282435-42282195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):131, 89

               
               
               Conread position:233-454
               
               
               Cow position:chrX:10437663-10437885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):143, 14

               
               
               Conread position:233-474
               
               
               Cow position:chrX:10373321-10373067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):31, 36

               
               
               Conread position:236-467
               
               
               Cow position:chrX:42338943-42339169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:237-448
               
               
               Cow position:chrX:46315374-46315593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 211

               
               
               Conread position:237-509
               
               
               Cow position:chrX:11806012-11806292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 22

               
               
               Conread position:238-472
               
               
               Cow position:chrX:19019105-19019348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:238-503
               
               
               Cow position:chrX:40179874-40180139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 100

               
               
               Conread position:238-509
               
               
               Cow position:chrX:1946707-1946996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:238-509
               
               
               Cow position:chrX:2499337-2499615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:238-509
               
               
               Cow position:chrX:2964055-2963775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):93, 78

               
               
               Conread position:239-509
               
               
               Cow position:chrX:41403979-41403686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:239-509
               
               
               Cow position:chrX:41410527-41410234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:239-509
               
               
               Cow position:chrX:45933009-45932729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:242-474
               
               
               Cow position:chrX:31745065-31745287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):135, 69

               
               
               Conread position:242-496
               
               
               Cow position:chrX:21665597-21665855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:242-509
               
               
               Cow position:chrX:40452214-40452488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 13

               
               
               Conread position:243-416
               
               
               Cow position:chrX:7336824-7336645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):89, 21

               
               
               Conread position:246-509
               
               
               Cow position:chrX:23299952-23299679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:248-516
               
               
               Cow position:chrX:48287458-48287722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):108, 163

               
               
               Conread position:248-528
               
               
               Cow position:chrX:42587437-42587721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):120, 65

               
               
               Conread position:250-499
               
               
               Cow position:chrX:45694091-45693841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:259-474
               
               
               Cow position:chrX:25411821-25411600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 83

               
               
               Conread position:259-509
               
               
               Cow position:chrX:38967628-38967377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 242

               
               
               Conread position:265-424
               
               
               Cow position:chrX:24149615-24149450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:267-454
               
               
               Cow position:chrX:24201159-24200972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:270-472
               
               
               Cow position:chrX:44731567-44731356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:275-509
               
               
               Cow position:chrX:4123802-4123560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:278-443
               
               
               Cow position:chrX:16324003-16324172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:287-470
               
               
               Cow position:chrX:6640082-6639888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:158
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:287-509
               
               
               Cow position:chrX:23061398-23061179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 64

               
               
               Conread position:301-488
               
               
               Cow position:chrX:48536724-48536920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):69, 136

               
               
               Conread position:308-474
               
               
               Cow position:chrX:42499095-42499269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:308-508
               
               
               Cow position:chrX:1518510-1518713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:311-472
               
               
               Cow position:chrX:20504684-20504528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:311-509
               
               
               Cow position:chrX:21319607-21319422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:321-509
               
               
               Cow position:chrX:29049882-29049700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0
Show alignments to all cow chromosomes.
Conread position:	1-187
Cow position:	chrX:32867117-32866935 (view UCSC Genome Browser custom track)
Alignm length:	192
Alignm identity:	144
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	18, 11
Conread position:	1-234
Cow position:	chrX:4559979-4559743 (view UCSC Genome Browser custom track)
Alignm length:	244
Alignm identity:	183
Alignm E-value:	1e-36
Alignm gaps (pig, cow):	56, 20
Conread position:	1-238
Cow position:	chrX:27668714-27668958 (view UCSC Genome Browser custom track)
Alignm length:	252
Alignm identity:	181
Alignm E-value:	6e-30
Alignm gaps (pig, cow):	9, 37
Conread position:	1-244
Cow position:	chrX:35659042-35658794 (view UCSC Genome Browser custom track)
Alignm length:	255
Alignm identity:	191
Alignm E-value:	2e-39
Alignm gaps (pig, cow):	18, 37
Conread position:	1-252
Cow position:	chrX:16984882-16984625 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	186
Alignm E-value:	3e-23
Alignm gaps (pig, cow):	59, 35
Conread position:	1-283
Cow position:	chrX:6599529-6599828 (view UCSC Genome Browser custom track)
Alignm length:	305
Alignm identity:	213
Alignm E-value:	7e-31
Alignm gaps (pig, cow):	57, 24
Conread position:	1-284
Cow position:	chrX:27306685-27306407 (view UCSC Genome Browser custom track)
Alignm length:	294
Alignm identity:	205
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	191, 11
Conread position:	1-293
Cow position:	chrX:35986065-35985764 (view UCSC Genome Browser custom track)
Alignm length:	307
Alignm identity:	221
Alignm E-value:	8.00141e-43
Alignm gaps (pig, cow):	14, 39
Conread position:	1-299
Cow position:	chrX:39353018-39352720 (view UCSC Genome Browser custom track)
Alignm length:	317
Alignm identity:	229
Alignm E-value:	8e-33
Alignm gaps (pig, cow):	62, 29
Conread position:	1-350
Cow position:	chrX:17949248-17949601 (view UCSC Genome Browser custom track)
Alignm length:	360
Alignm identity:	237
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	56, 20
Conread position:	1-363
Cow position:	chrX:27945805-27946183 (view UCSC Genome Browser custom track)
Alignm length:	383
Alignm identity:	259
Alignm E-value:	1e-37
Alignm gaps (pig, cow):	39, 15
Conread position:	1-367
Cow position:	chrX:34315772-34315396 (view UCSC Genome Browser custom track)
Alignm length:	391
Alignm identity:	280
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	57, 15
Conread position:	1-369
Cow position:	chrX:29723998-29723611 (view UCSC Genome Browser custom track)
Alignm length:	397
Alignm identity:	271
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	59, 36
Conread position:	1-398
Cow position:	chrX:27207040-27206636 (view UCSC Genome Browser custom track)
Alignm length:	416
Alignm identity:	280
Alignm E-value:	5e-39
Alignm gaps (pig, cow):	57, 29
Conread position:	1-410
Cow position:	chrX:27145843-27145447 (view UCSC Genome Browser custom track)
Alignm length:	422
Alignm identity:	304
Alignm E-value:	0
Alignm gaps (pig, cow):	59, 14
Conread position:	1-430
Cow position:	chrX:47484014-47484467 (view UCSC Genome Browser custom track)
Alignm length:	460
Alignm identity:	309
Alignm E-value:	2e-39
Alignm gaps (pig, cow):	39, 13
Conread position:	1-452
Cow position:	chrX:11633925-11633460 (view UCSC Genome Browser custom track)
Alignm length:	474
Alignm identity:	346
Alignm E-value:	0
Alignm gaps (pig, cow):	59, 14
Conread position:	1-453
Cow position:	chrX:21642237-21642697 (view UCSC Genome Browser custom track)
Alignm length:	470
Alignm identity:	308
Alignm E-value:	5.99994e-41
Alignm gaps (pig, cow):	56, 15
Conread position:	1-466
Cow position:	chrX:17231989-17231502 (view UCSC Genome Browser custom track)
Alignm length:	492
Alignm identity:	350
Alignm E-value:	0
Alignm gaps (pig, cow):	37, 112
Conread position:	1-468
Cow position:	chrX:30962631-30963106 (view UCSC Genome Browser custom track)
Alignm length:	484
Alignm identity:	341
Alignm E-value:	0
Alignm gaps (pig, cow):	59, 15