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Cow genome map

           
Conread name:
           
Pig1-86D03
        

               
Conread position:
               
1-179
               

               
Cow position:
               
chr21:21907305-21907476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
104, 16
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr21:28919394-28919576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr21:868795-868979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr21:5464877-5464693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr21:47363605-47363792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr21:17929708-17929907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
41, 18
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr21:41140589-41140783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr21:36910060-36909858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr21:46141177-46140962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr21:40432574-40432368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr21:16152570-16152350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr21:45971045-45971254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
132, 16
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr21:41107639-41107846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr21:7581776-7582003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr21:6909749-6909978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr21:23568357-23568118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr21:41155999-41155764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr21:20160805-20160581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr21:34654202-34653975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr21:3818338-3818103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr21:26245043-26244818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr21:9697951-9698193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr21:20418553-20418791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr21:33563132-33562907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr21:42384637-42384403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:395996-395763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:641716-641479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:957801-957565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 37
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:3360886-3361118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
16, 45
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:9416380-9416139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:10004757-10004989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
16, 33
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:10264162-10263928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:18155437-18155677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:22718655-22718884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:23587011-23586773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:23980053-23980289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:25383155-25382908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:27521211-27521441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:28924238-28924009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:30231565-30231805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:31253662-31253436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
127, 17
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:32339611-32339845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:33997098-33997334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:34010267-34010503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:37344972-37345205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:40168497-40168737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:40589353-40589586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:40786806-40786567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:41198270-41198514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:41579885-41579644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:42007333-42007572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:42135487-42135727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:47169-46930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:4399932-4399691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:7564178-7564431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 220
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:8125676-8125911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:10001204-10000971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:10633511-10633749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
97, 17
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:11644837-11645077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:13127970-13128202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:15584290-15584522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:16187678-16187914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 44
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:18779847-18780080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:19258947-19258718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
123, 17
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:23606801-23606566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
127, 45
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:25127733-25127492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:28989742-28989504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
12, 60
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:29485107-29484875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:33729559-33729326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:36789924-36789685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:36795732-36795495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:44251714-44251934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:49699911-49700144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr21:10673250-10673018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr21:5898273-5898515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
240, 16
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr21:23321949-23322199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:13365471-13365222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:3585239-3585482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:12461838-12462091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:24642649-24642396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:28512643-28512409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:37789870-37790121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:42413968-42414226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:47763988-47764228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr21:30606957-30607212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:6998076-6997801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr21:30835492-30835215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
104, 17
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr21:25628781-25629078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
2-186
               

               
Cow position:
               
chr21:977020-977198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr21:40266249-40266049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 16
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chr21:10410350-10410125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 16
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chr21:29978632-29978850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chr21:6017753-6017519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr21:3400704-3400936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
2-239
               

               
Cow position:
               
chr21:46144087-46143841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr21:15976761-15976527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr21:28244598-28244363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr21:30848813-30849052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 16
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr21:34390847-34391083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr21:6051631-6051398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr21:10151933-10151686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr21:15911528-15911292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr21:20044636-20044882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr21:20153084-20152839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr21:27145864-27146100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
130, 15
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr21:45920930-45921167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr21:4281748-4281966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
15, 42
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chr21:41597938-41597720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
3-239
               

               
Cow position:
               
chr21:40899466-40899234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr21:11250996-11250762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
125, 15
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr21:27863386-27863623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr21:6713396-6713634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 44
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr21:13840453-13840213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr21:28733786-28734020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
4-179
               

               
Cow position:
               
chr21:19513987-19513818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 8
               

               
Conread position:
               
4-209
               

               
Cow position:
               
chr21:33359917-33360110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
4-230
               

               
Cow position:
               
chr21:38664765-38664541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr21:17856670-17856440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 43
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr21:38900899-38900671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
6-240
               

               
Cow position:
               
chr21:1591678-1591443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr21:17193630-17193868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 6
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr21:46849004-46849231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
7-186
               

               
Cow position:
               
chr21:5238516-5238332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
7-239
               

               
Cow position:
               
chr21:41621248-41621018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr21:43357135-43357372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr21:36162838-36163071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
11-240
               

               
Cow position:
               
chr21:5392418-5392646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
11-240
               

               
Cow position:
               
chr21:41878588-41878363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
11-241
               

               
Cow position:
               
chr21:45439114-45439358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
12-231
               

               
Cow position:
               
chr21:10118675-10118459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
12-240
               

               
Cow position:
               
chr21:22861118-22860894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
100, 31
               

               
Conread position:
               
12-240
               

               
Cow position:
               
chr21:23192393-23192621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
94, 47
               

               
Conread position:
               
12-241
               

               
Cow position:
               
chr21:10727393-10727172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
15-241
               

               
Cow position:
               
chr21:15867427-15867200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 85
               

               
Conread position:
               
16-240
               

               
Cow position:
               
chr21:2679669-2679449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
23-241
               

               
Cow position:
               
chr21:30150155-30150374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
25-241
               

               
Cow position:
               
chr21:3813379-3813591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
27-240
               

               
Cow position:
               
chr21:24222432-24222645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
27-254
               

               
Cow position:
               
chr21:28882252-28882019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
24, 188
               

               
Conread position:
               
28-214
               

               
Cow position:
               
chr21:36756704-36756517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
28-218
               

               
Cow position:
               
chr21:13495647-13495455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
29-241
               

               
Cow position:
               
chr21:39401698-39401486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 29
               

               
Conread position:
               
32-240
               

               
Cow position:
               
chr21:12960800-12961006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
32-240
               

               
Cow position:
               
chr21:18790462-18790668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
32-248
               

               
Cow position:
               
chr21:18415152-18414935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
34-240
               

               
Cow position:
               
chr21:43240966-43240755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 93
               

               
Conread position:
               
35-240
               

               
Cow position:
               
chr21:3236622-3236420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
62, 22
               

               
Conread position:
               
36-242
               

               
Cow position:
               
chr21:30236728-30236926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
6, 22
               

               
Conread position:
               
37-198
               

               
Cow position:
               
chr21:7394478-7394316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
37-240
               

               
Cow position:
               
chr21:6764604-6764807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 12
               

               
Conread position:
               
37-241
               

               
Cow position:
               
chr21:10114236-10114437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr21:35899937-35899776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
38-205
               

               
Cow position:
               
chr21:1511386-1511219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
38-238
               

               
Cow position:
               
chr21:17175240-17175041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
147, 19
               

               
Conread position:
               
38-240
               

               
Cow position:
               
chr21:28997805-28998009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
38-240
               

               
Cow position:
               
chr21:41974281-41974482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
81, 20
               

               
Conread position:
               
38-240
               

               
Cow position:
               
chr21:45330510-45330711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
38-241
               

               
Cow position:
               
chr21:8235462-8235653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
38-254
               

               
Cow position:
               
chr21:15611238-15611028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
56, 21
               

               
Conread position:
               
39-240
               

               
Cow position:
               
chr21:39450069-39450272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
39-241
               

               
Cow position:
               
chr21:32536069-32535868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
62, 18
               

               
Conread position:
               
39-255
               

               
Cow position:
               
chr21:32237374-32237173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
41-188
               

               
Cow position:
               
chr21:9302337-9302483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr21:22720318-22720162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
41-235
               

               
Cow position:
               
chr21:5636630-5636820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
41-236
               

               
Cow position:
               
chr21:2260275-2260461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
41-240
               

               
Cow position:
               
chr21:11360126-11359934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
41-241
               

               
Cow position:
               
chr21:3380988-3381190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
41-241
               

               
Cow position:
               
chr21:47802169-47802368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
57, 16
               

               
Conread position:
               
41-246
               

               
Cow position:
               
chr21:8527394-8527590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
141, 16
               

               
Conread position:
               
42-214
               

               
Cow position:
               
chr21:37014317-37014484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
42-231
               

               
Cow position:
               
chr21:13713751-13713938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
42-240
               

               
Cow position:
               
chr21:10514895-10514703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
55, 17
               

               
Conread position:
               
42-254
               

               
Cow position:
               
chr21:2294072-2293869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
43-221
               

               
Cow position:
               
chr21:28955596-28955422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
43-240
               

               
Cow position:
               
chr21:24765373-24765185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
44-237
               

               
Cow position:
               
chr21:29224773-29224966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
140, 13
               

               
Conread position:
               
45-234
               

               
Cow position:
               
chr21:13898274-13898083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
47-240
               

               
Cow position:
               
chr21:42190087-42190281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
48-255
               

               
Cow position:
               
chr21:8985638-8985425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
9, 113
               

               
Conread position:
               
52-240
               

               
Cow position:
               
chr21:28443294-28443481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
53-240
               

               
Cow position:
               
chr21:18783607-18783791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
56-241
               

               
Cow position:
               
chr21:17455462-17455276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
56-241
               

               
Cow position:
               
chr21:31676575-31676388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
57-231
               

               
Cow position:
               
chr21:17410583-17410754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
57-236
               

               
Cow position:
               
chr21:42343663-42343476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
57-240
               

               
Cow position:
               
chr21:5454916-5455099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 45
               

               
Conread position:
               
57-240
               

               
Cow position:
               
chr21:27743824-27743638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
43, 163
               

               
Conread position:
               
57-241
               

               
Cow position:
               
chr21:1464305-1464120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 51
               

               
Conread position:
               
57-241
               

               
Cow position:
               
chr21:36280080-36279900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 61
               

               
Conread position:
               
57-241
               

               
Cow position:
               
chr21:42913668-42913854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 127
               

               
Conread position:
               
59-254
               

               
Cow position:
               
chr21:39809967-39809779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
68, 62
               

               
Conread position:
               
60-242
               

               
Cow position:
               
chr21:47713932-47714117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 47
               

               
Conread position:
               
61-240
               

               
Cow position:
               
chr21:38449374-38449555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 155
               

               
Conread position:
               
61-241
               

               
Cow position:
               
chr21:4568356-4568177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
61-241
               

               
Cow position:
               
chr21:9979899-9980072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
62-240
               

               
Cow position:
               
chr21:2785706-2785883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
56, 51
               

               
Conread position:
               
62-240
               

               
Cow position:
               
chr21:21077396-21077219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
62-241
               

               
Cow position:
               
chr21:911896-912075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
66, 127
               

               
Conread position:
               
62-254
               

               
Cow position:
               
chr21:4189911-4189714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 187
               

               
Conread position:
               
64-231
               

               
Cow position:
               
chr21:18495040-18494871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
12, 21
               

               
Conread position:
               
67-205
               

               
Cow position:
               
chr21:15544155-15544290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 30
               

               
Conread position:
               
67-240
               

               
Cow position:
               
chr21:8451958-8451791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
115, 50
               

               
Conread position:
               
67-240
               

               
Cow position:
               
chr21:44109068-44108895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
37, 62
               

               
Conread position:
               
67-241
               

               
Cow position:
               
chr21:5137422-5137598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
67-244
               

               
Cow position:
               
chr21:5985253-5985429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
68-239
               

               
Cow position:
               
chr21:39403471-39403641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
69-186
               

               
Cow position:
               
chr21:14228504-14228624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
69-240
               

               
Cow position:
               
chr21:16481380-16481550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
55, 32
               

               
Conread position:
               
69-241
               

               
Cow position:
               
chr21:9998655-9998827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
70-254
               

               
Cow position:
               
chr21:47009173-47009360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 151
               

               
Conread position:
               
73-240
               

               
Cow position:
               
chr21:21143960-21143794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
37, 27
               

               
Conread position:
               
76-241
               

               
Cow position:
               
chr21:17434261-17434425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
53, 113
               

               
Conread position:
               
77-246
               

               
Cow position:
               
chr21:41957120-41957289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
50, 112
               

               
Conread position:
               
86-240
               

               
Cow position:
               
chr21:46973086-46973238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
89-229
               

               
Cow position:
               
chr21:37361434-37361574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 7
               

               
Conread position:
               
90-240
               

               
Cow position:
               
chr21:42463791-42463944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
99-241
               

               
Cow position:
               
chr21:28027839-28027695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 6
               

               
Conread position:
               
102-241
               

               
Cow position:
               
chr21:8618308-8618166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
103-240
               

               
Cow position:
               
chr21:33210231-33210095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
105-240
               

               
Cow position:
               
chr21:48484419-48484556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
119-231
               

               
Cow position:
               
chr21:42348660-42348772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
121-240
               

               
Cow position:
               
chr21:5344670-5344551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
8, 82
               

               
Conread position:
               
126-239
               

               
Cow position:
               
chr21:13395558-13395445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 19
               
Show alignments to all cow chromosomes.