Cow genome map
| Conread name: | Pig1-87J20 |
| Conread position: | 1-226 |
| Cow position: | chr11:32284835-32284611 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 96 |
| Conread position: | 1-275 |
| Cow position: | chr11:41422823-41422540 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-276 |
| Cow position: | chr11:3227819-3228103 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-305 |
| Cow position: | chr11:85391741-85391425 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 1-307 |
| Cow position: | chr11:3495067-3495377 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 162 |
| Conread position: | 1-332 |
| Cow position: | chr11:87138132-87137791 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 75, 144 |
| Conread position: | 1-371 |
| Cow position: | chr11:75392335-75392717 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 76, 217 |
| Conread position: | 1-431 |
| Cow position: | chr11:67446157-67445718 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 286 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 74, 396 |
| Conread position: | 1-434 |
| Cow position: | chr11:15994248-15994686 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 165 |
| Conread position: | 1-461 |
| Cow position: | chr11:10957903-10958373 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-464 |
| Cow position: | chr11:12951064-12950609 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 1-488 |
| Cow position: | chr11:15126900-15127395 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 214 |
| Conread position: | 1-488 |
| Cow position: | chr11:39805800-39806275 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 307 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 52 |
| Conread position: | 1-488 |
| Cow position: | chr11:53429939-53429441 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 1-489 |
| Cow position: | chr11:2834372-2834857 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 81 |
| Conread position: | 1-489 |
| Cow position: | chr11:7121881-7121382 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-489 |
| Cow position: | chr11:7228336-7228835 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 152 |
| Conread position: | 1-489 |
| Cow position: | chr11:9732592-9732081 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 1-489 |
| Cow position: | chr11:15987339-15987833 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 164 |
| Conread position: | 1-489 |
| Cow position: | chr11:20732140-20731641 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 1-489 |
| Cow position: | chr11:25099087-25098588 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-489 |
| Cow position: | chr11:26122835-26122340 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 213 |
| Conread position: | 1-489 |
| Cow position: | chr11:26785334-26785837 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 156 |
| Conread position: | 1-489 |
| Cow position: | chr11:27834662-27834177 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 1-489 |
| Cow position: | chr11:28124597-28125096 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr11:28227695-28227198 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 215 |
| Conread position: | 1-489 |
| Cow position: | chr11:32078697-32078198 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 152 |
| Conread position: | 1-489 |
| Cow position: | chr11:32478730-32478231 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr11:33602547-33602047 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 152 |
| Conread position: | 1-489 |
| Cow position: | chr11:38575400-38574901 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr11:38600852-38600356 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 102 |
| Conread position: | 1-489 |
| Cow position: | chr11:38833390-38832897 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 152 |
| Conread position: | 1-489 |
| Cow position: | chr11:39585639-39585140 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr11:41744643-41745142 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr11:44581148-44580649 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 153 |
| Conread position: | 1-489 |
| Cow position: | chr11:47737459-47736964 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 144 |
| Conread position: | 1-489 |
| Cow position: | chr11:49012978-49012478 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr11:56917904-56917422 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 53 |
| Conread position: | 1-489 |
| Cow position: | chr11:57626091-57625595 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 115 |
| Conread position: | 1-489 |
| Cow position: | chr11:63391393-63390895 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 161 |
| Conread position: | 1-489 |
| Cow position: | chr11:67296925-67296427 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 152 |
| Conread position: | 1-489 |
| Cow position: | chr11:67452737-67453236 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 398 |
| Conread position: | 1-489 |
| Cow position: | chr11:71331585-71332083 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 1-489 |
| Cow position: | chr11:73467332-73466839 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 135 |
| Conread position: | 1-489 |
| Cow position: | chr11:84966200-84966695 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 164 |
| Conread position: | 1-490 |
| Cow position: | chr11:47973769-47973269 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 135 |
| Conread position: | 1-496 |
| Cow position: | chr11:28392974-28393481 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 102 |
| Conread position: | 1-497 |
| Cow position: | chr11:37070255-37069746 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 337 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 172, 59 |
| Conread position: | 1-497 |
| Cow position: | chr11:66731238-66731734 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 153 |
| Conread position: | 1-498 |
| Cow position: | chr11:60757878-60757384 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 1-499 |
| Cow position: | chr11:67864187-67863684 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 140 |
| Conread position: | 2-477 |
| Cow position: | chr11:35253208-35252745 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 311 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 73, 133 |
| Conread position: | 5-490 |
| Cow position: | chr11:36764761-36765249 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 7-489 |
| Cow position: | chr11:4268057-4267571 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 146 |
| Conread position: | 7-497 |
| Cow position: | chr11:4054209-4053721 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 138 |
| Conread position: | 10-268 |
| Cow position: | chr11:7720294-7720037 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 110 |
| Conread position: | 14-366 |
| Cow position: | chr11:12504750-12504399 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 76, 48 |
| Conread position: | 14-396 |
| Cow position: | chr11:58947739-58948127 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 63, 131 |
| Conread position: | 14-484 |
| Cow position: | chr11:55484351-55484820 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 14-488 |
| Cow position: | chr11:74346501-74346986 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 102 |
| Conread position: | 14-497 |
| Cow position: | chr11:49172405-49171909 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 131 |
| Conread position: | 15-205 |
| Cow position: | chr11:261603-261411 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 128, 56 |
| Conread position: | 15-470 |
| Cow position: | chr11:72312553-72313019 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 154 |
| Conread position: | 15-497 |
| Cow position: | chr11:9431313-9431789 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 341 |
| Conread position: | 18-498 |
| Cow position: | chr11:30210213-30210681 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 154 |
| Conread position: | 20-448 |
| Cow position: | chr11:21470900-21471337 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 55, 163 |
| Conread position: | 37-490 |
| Cow position: | chr11:44232563-44233019 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 160 |
| Conread position: | 74-357 |
| Cow position: | chr11:85731856-85731564 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 73, 106 |
| Conread position: | 75-383 |
| Cow position: | chr11:48981174-48981487 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 105, 62 |
Show alignments to all cow chromosomes.