Cow genome map

Conread name: Pig1-87J20

Conread position: 1-139
Cow position: chr3:26752131-26751992 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 104, 0

Conread position: 1-163
Cow position: chr3:80580732-80580897 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 75, 144

Conread position: 1-170
Cow position: chr3:64813149-64812974 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 1-241
Cow position: chr3:49733869-49734113 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 75, 144

Conread position: 1-243
Cow position: chr3:32704149-32703895 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 160

Conread position: 1-265
Cow position: chr3:77549329-77549586 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 195, 34

Conread position: 1-275
Cow position: chr3:32218112-32218394 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 183
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 59, 151

Conread position: 1-283
Cow position: chr3:84197869-84198160 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 74, 124

Conread position: 1-323
Cow position: chr3:7156413-7156084 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 210
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 143

Conread position: 1-328
Cow position: chr3:42151487-42151151 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 217
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 75, 164

Conread position: 1-348
Cow position: chr3:19754664-19754304 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 248
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 59, 152

Conread position: 1-348
Cow position: chr3:32491615-32491974 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 237
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 76, 144

Conread position: 1-348
Cow position: chr3:37627264-37627621 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 241
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 19, 56

Conread position: 1-426
Cow position: chr3:63278320-63277899 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 283
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 85, 109

Conread position: 1-450
Cow position: chr3:24347492-24347949 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 304
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 53, 216

Conread position: 1-461
Cow position: chr3:18113389-18112919 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 262

Conread position: 1-461
Cow position: chr3:34505049-34504579 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 101

Conread position: 1-465
Cow position: chr3:29328985-29328510 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-467
Cow position: chr3:48361230-48361721 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 144

Conread position: 1-486
Cow position: chr3:68890274-68889779 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 144

Conread position: 1-487
Cow position: chr3:68697670-68697171 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-488
Cow position: chr3:6713305-6713804 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 145

Conread position: 1-488
Cow position: chr3:38868878-38869369 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 59

Conread position: 1-488
Cow position: chr3:62881663-62882157 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 144

Conread position: 1-489
Cow position: chr3:596428-596916 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 131

Conread position: 1-489
Cow position: chr3:2708571-2708073 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 73

Conread position: 1-489
Cow position: chr3:7477623-7477125 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 215

Conread position: 1-489
Cow position: chr3:10242952-10243457 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 167

Conread position: 1-489
Cow position: chr3:13035987-13036486 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chr3:13724418-13723917 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 264

Conread position: 1-489
Cow position: chr3:15415767-15416262 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 164

Conread position: 1-489
Cow position: chr3:18861740-18862237 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 217

Conread position: 1-489
Cow position: chr3:19798855-19798356 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chr3:19882773-19883266 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chr3:21027092-21026607 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 58

Conread position: 1-489
Cow position: chr3:23009689-23010168 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 144

Conread position: 1-489
Cow position: chr3:24264498-24264998 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 156

Conread position: 1-489
Cow position: chr3:30616639-30616141 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 216

Conread position: 1-489
Cow position: chr3:31020980-31021479 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chr3:32620744-32620245 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 135

Conread position: 1-489
Cow position: chr3:34014639-34015138 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chr3:34458569-34458070 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 144

Conread position: 1-489
Cow position: chr3:41208298-41207801 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 144

Conread position: 1-489
Cow position: chr3:43190973-43190474 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 152

Conread position: 1-489
Cow position: chr3:45976800-45977298 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 42

Conread position: 1-489
Cow position: chr3:48602549-48603047 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 153

Conread position: 1-489
Cow position: chr3:49135263-49134762 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 400

Conread position: 1-489
Cow position: chr3:49563307-49563806 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 144

Conread position: 1-489
Cow position: chr3:49908715-49908220 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chr3:54655068-54655577 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 135

Conread position: 1-489
Cow position: chr3:63689950-63689450 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 147

Conread position: 1-489
Cow position: chr3:64652964-64653465 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 134

Conread position: 1-489
Cow position: chr3:68871452-68870954 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chr3:69931536-69931038 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 152

Conread position: 1-489
Cow position: chr3:74059774-74060270 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 395

Conread position: 1-489
Cow position: chr3:78025135-78024634 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 143

Conread position: 1-490
Cow position: chr3:22338219-22338705 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 61

Conread position: 1-495
Cow position: chr3:66622513-66623016 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 152

Conread position: 1-497
Cow position: chr3:24443797-24443289 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 152

Conread position: 1-497
Cow position: chr3:56337654-56337149 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 144

Conread position: 1-497
Cow position: chr3:83766550-83767058 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 217

Conread position: 1-498
Cow position: chr3:6784707-6785214 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 142

Conread position: 1-498
Cow position: chr3:59331751-59332266 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 148

Conread position: 1-498
Cow position: chr3:64134649-64135170 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 146

Conread position: 1-498
Cow position: chr3:68718409-68717903 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 144

Conread position: 1-498
Cow position: chr3:70889578-70890071 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 31

Conread position: 1-499
Cow position: chr3:19719243-19718736 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 151

Conread position: 1-499
Cow position: chr3:24586946-24586425 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 144

Conread position: 2-485
Cow position: chr3:82888332-82888793 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 37

Conread position: 2-489
Cow position: chr3:74850834-74850349 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 139

Conread position: 2-489
Cow position: chr3:77580917-77581411 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 166

Conread position: 3-489
Cow position: chr3:37971351-37971840 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 142

Conread position: 5-236
Cow position: chr3:40102501-40102265 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 36, 199

Conread position: 5-498
Cow position: chr3:3938148-3938648 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 140

Conread position: 5-498
Cow position: chr3:17938693-17938197 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 19

Conread position: 7-489
Cow position: chr3:72632371-72632866 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 147

Conread position: 7-497
Cow position: chr3:47079306-47078809 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 158

Conread position: 9-489
Cow position: chr3:63201363-63201830 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 141

Conread position: 10-488
Cow position: chr3:69963493-69963015 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 22

Conread position: 11-484
Cow position: chr3:82362942-82363427 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 133

Conread position: 14-489
Cow position: chr3:35618898-35619382 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 13

Conread position: 14-489
Cow position: chr3:41082482-41082959 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 99

Conread position: 14-498
Cow position: chr3:74848835-74848356 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 45

Conread position: 15-480
Cow position: chr3:24573847-24573371 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 130

Conread position: 24-488
Cow position: chr3:79592460-79592940 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 129

Conread position: 34-348
Cow position: chr3:38491785-38492109 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 222
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 43, 65

Conread position: 34-421
Cow position: chr3:33635745-33636138 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 270
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 43, 155

Conread position: 34-489
Cow position: chr3:32327097-32326626 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 135

Conread position: 35-329
Cow position: chr3:79143319-79143609 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 198
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 33, 119

Conread position: 43-453
Cow position: chr3:58035873-58036288 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 277
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 30, 120

Conread position: 55-498
Cow position: chr3:31770504-31770946 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 76

Conread position: 62-488
Cow position: chr3:64427875-64427453 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 283
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 83, 8

Conread position: 74-489
Cow position: chr3:80305868-80306282 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 112

Conread position: 75-498
Cow position: chr3:36517252-36516837 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 66

Conread position: 80-397
Cow position: chr3:61276973-61277295 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 206
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 100, 69

Show alignments to all cow chromosomes.