Cow genome map
| Conread name: | Pig1-87J20 |
| Conread position: | 1-139 |
| Cow position: | chr5:23530437-23530299 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-239 |
| Cow position: | chr5:40922489-40922250 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 94 |
| Conread position: | 1-262 |
| Cow position: | chr5:28024905-28025164 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 109, 85 |
| Conread position: | 1-268 |
| Cow position: | chr5:11922923-11922647 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-275 |
| Cow position: | chr5:4879185-4879468 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-275 |
| Cow position: | chr5:29031476-29031759 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-278 |
| Cow position: | chr5:34698686-34698974 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 74, 154 |
| Conread position: | 1-326 |
| Cow position: | chr5:46792054-46792391 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 74, 217 |
| Conread position: | 1-348 |
| Cow position: | chr5:4602716-4603075 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-390 |
| Cow position: | chr5:35988800-35988418 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 93, 149 |
| Conread position: | 1-427 |
| Cow position: | chr5:14782962-14782523 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 140, 309 |
| Conread position: | 1-432 |
| Cow position: | chr5:37423356-37423798 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 62, 42 |
| Conread position: | 1-444 |
| Cow position: | chr5:57889209-57888763 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 74, 214 |
| Conread position: | 1-464 |
| Cow position: | chr5:25929483-25929013 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 1-467 |
| Cow position: | chr5:43989282-43989760 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 28 |
| Conread position: | 1-474 |
| Cow position: | chr5:71622097-71621613 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-480 |
| Cow position: | chr5:50605133-50604640 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 191 |
| Conread position: | 1-482 |
| Cow position: | chr5:58150377-58149910 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 140 |
| Conread position: | 1-482 |
| Cow position: | chr5:59278349-59278840 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 1-487 |
| Cow position: | chr5:70532201-70531716 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 162 |
| Conread position: | 1-488 |
| Cow position: | chr5:18703863-18704359 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 144 |
| Conread position: | 1-488 |
| Cow position: | chr5:57123725-57124211 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 60 |
| Conread position: | 1-489 |
| Cow position: | chr5:444727-445219 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 183 |
| Conread position: | 1-489 |
| Cow position: | chr5:1339718-1339221 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 1-489 |
| Cow position: | chr5:3501921-3501426 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 213 |
| Conread position: | 1-489 |
| Cow position: | chr5:4352830-4353304 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 335 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 53 |
| Conread position: | 1-489 |
| Cow position: | chr5:5925758-5925258 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 144 |
| Conread position: | 1-489 |
| Cow position: | chr5:18249263-18249760 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 152 |
| Conread position: | 1-489 |
| Cow position: | chr5:23958121-23957625 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 214 |
| Conread position: | 1-489 |
| Cow position: | chr5:24100854-24101352 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 90 |
| Conread position: | 1-489 |
| Cow position: | chr5:25902257-25901764 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 60 |
| Conread position: | 1-489 |
| Cow position: | chr5:27196877-27196378 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 144 |
| Conread position: | 1-489 |
| Cow position: | chr5:27550257-27549758 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 1-489 |
| Cow position: | chr5:30156561-30157061 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 144 |
| Conread position: | 1-489 |
| Cow position: | chr5:32364985-32365466 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 45 |
| Conread position: | 1-489 |
| Cow position: | chr5:37379309-37379790 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 328 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 179, 60 |
| Conread position: | 1-489 |
| Cow position: | chr5:42506965-42507461 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 197 |
| Conread position: | 1-489 |
| Cow position: | chr5:44710177-44709678 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 152 |
| Conread position: | 1-489 |
| Cow position: | chr5:45180890-45180387 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr5:47341926-47342415 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 152 |
| Conread position: | 1-489 |
| Cow position: | chr5:49222293-49221791 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 401 |
| Conread position: | 1-489 |
| Cow position: | chr5:59145576-59146077 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 145 |
| Conread position: | 1-489 |
| Cow position: | chr5:73486718-73486221 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 152 |
| Conread position: | 1-497 |
| Cow position: | chr5:10921048-10921551 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 1-497 |
| Cow position: | chr5:26076997-26076491 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-497 |
| Cow position: | chr5:41979702-41980184 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 107 |
| Conread position: | 1-498 |
| Cow position: | chr5:40791060-40791551 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 143 |
| Conread position: | 1-499 |
| Cow position: | chr5:23667948-23667433 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-499 |
| Cow position: | chr5:34299082-34299582 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 15 |
| Conread position: | 1-499 |
| Cow position: | chr5:54621831-54622335 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 145 |
| Conread position: | 2-430 |
| Cow position: | chr5:11957265-11956843 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 294 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 58, 122 |
| Conread position: | 4-489 |
| Cow position: | chr5:7276039-7276535 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 150 |
| Conread position: | 7-489 |
| Cow position: | chr5:18559194-18558701 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 138 |
| Conread position: | 7-489 |
| Cow position: | chr5:58142030-58141541 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 192 |
| Conread position: | 14-488 |
| Cow position: | chr5:1229003-1229480 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 154 |
| Conread position: | 14-490 |
| Cow position: | chr5:14877897-14877428 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 88 |
| Conread position: | 15-489 |
| Cow position: | chr5:5105441-5105926 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 148 |
| Conread position: | 16-489 |
| Cow position: | chr5:27654990-27655450 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 328 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 26-489 |
| Cow position: | chr5:38737032-38737497 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 118 |
| Conread position: | 31-497 |
| Cow position: | chr5:23829938-23829459 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 32-489 |
| Cow position: | chr5:23846735-23846275 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 34-489 |
| Cow position: | chr5:18884335-18883886 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 146, 21 |
| Conread position: | 49-482 |
| Cow position: | chr5:6189158-6189593 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 58-484 |
| Cow position: | chr5:29673529-29673941 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 96, 51 |
| Conread position: | 74-347 |
| Cow position: | chr5:68591013-68591277 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 67 |
| Conread position: | 74-489 |
| Cow position: | chr5:28948459-28948041 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 57 |
| Conread position: | 75-489 |
| Cow position: | chr5:4349719-4349294 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 123 |
| Conread position: | 85-467 |
| Cow position: | chr5:27172952-27173334 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 64 |
Show alignments to all cow chromosomes.