Cow genome map
| Conread name: | Pig1-87J20 |
| Conread position: | 1-234 |
| Cow position: | chr6:704558-704801 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 153 |
| Conread position: | 1-275 |
| Cow position: | chr6:2556989-2557275 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 220 |
| Conread position: | 1-275 |
| Cow position: | chr6:16982454-16982171 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 74, 201 |
| Conread position: | 1-275 |
| Cow position: | chr6:25803652-25803369 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-302 |
| Cow position: | chr6:30272546-30272235 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 59, 201 |
| Conread position: | 1-309 |
| Cow position: | chr6:25361634-25361948 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 1-348 |
| Cow position: | chr6:50486453-50486094 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 1-396 |
| Cow position: | chr6:5750273-5750679 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-396 |
| Cow position: | chr6:39349734-39350140 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 274 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-396 |
| Cow position: | chr6:66547802-66548208 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 68, 159 |
| Conread position: | 1-406 |
| Cow position: | chr6:69144742-69145149 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 1-447 |
| Cow position: | chr6:8636617-8636180 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-459 |
| Cow position: | chr6:61160536-61161018 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-464 |
| Cow position: | chr6:28702364-28701897 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 1-465 |
| Cow position: | chr6:18513896-18514353 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 1-466 |
| Cow position: | chr6:65849562-65849106 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 135 |
| Conread position: | 1-470 |
| Cow position: | chr6:3573126-3573591 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 144 |
| Conread position: | 1-482 |
| Cow position: | chr6:39911669-39912158 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 144 |
| Conread position: | 1-484 |
| Cow position: | chr6:40974529-40975021 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 98 |
| Conread position: | 1-488 |
| Cow position: | chr6:1536049-1536550 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 152 |
| Conread position: | 1-488 |
| Cow position: | chr6:21833305-21832819 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 1-489 |
| Cow position: | chr6:49231-48733 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:329016-328520 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 1-489 |
| Cow position: | chr6:916386-916883 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 143 |
| Conread position: | 1-489 |
| Cow position: | chr6:2377045-2377544 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 201 |
| Conread position: | 1-489 |
| Cow position: | chr6:5947435-5946935 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 145 |
| Conread position: | 1-489 |
| Cow position: | chr6:7138990-7138500 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 164 |
| Conread position: | 1-489 |
| Cow position: | chr6:10043560-10044055 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 164 |
| Conread position: | 1-489 |
| Cow position: | chr6:11019002-11019497 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 164 |
| Conread position: | 1-489 |
| Cow position: | chr6:11870586-11870091 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 146 |
| Conread position: | 1-489 |
| Cow position: | chr6:13309040-13308545 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 164 |
| Conread position: | 1-489 |
| Cow position: | chr6:14133401-14132903 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:16050947-16050450 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 129 |
| Conread position: | 1-489 |
| Cow position: | chr6:16592314-16592808 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 1-489 |
| Cow position: | chr6:16624176-16624652 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 56 |
| Conread position: | 1-489 |
| Cow position: | chr6:18913133-18912634 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:20351748-20351249 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:25375750-25375254 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 201 |
| Conread position: | 1-489 |
| Cow position: | chr6:27152099-27151600 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 217 |
| Conread position: | 1-489 |
| Cow position: | chr6:28400903-28400411 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:34128801-34129298 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 214 |
| Conread position: | 1-489 |
| Cow position: | chr6:35874367-35873871 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 1-489 |
| Cow position: | chr6:36530628-36531124 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 152 |
| Conread position: | 1-489 |
| Cow position: | chr6:37386923-37387421 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 217 |
| Conread position: | 1-489 |
| Cow position: | chr6:38874317-38873818 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 1-489 |
| Cow position: | chr6:39435578-39435076 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 95 |
| Conread position: | 1-489 |
| Cow position: | chr6:40277416-40277899 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 74, 106 |
| Conread position: | 1-489 |
| Cow position: | chr6:41390111-41389606 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:43331043-43330571 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 60 |
| Conread position: | 1-489 |
| Cow position: | chr6:43620073-43620571 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 216 |
| Conread position: | 1-489 |
| Cow position: | chr6:44018486-44017987 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 166 |
| Conread position: | 1-489 |
| Cow position: | chr6:46296614-46297113 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:50112444-50112915 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 334 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 75, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:50720457-50720938 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 84 |
| Conread position: | 1-489 |
| Cow position: | chr6:51149282-51149782 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:55238036-55238536 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:55539928-55539430 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 152 |
| Conread position: | 1-489 |
| Cow position: | chr6:60378504-60379003 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:62577841-62577342 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:62664117-62664615 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr6:65820241-65819739 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 217 |
| Conread position: | 1-489 |
| Cow position: | chr6:68029518-68030019 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 217 |
| Conread position: | 1-490 |
| Cow position: | chr6:8536959-8536454 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 159 |
| Conread position: | 1-497 |
| Cow position: | chr6:1054065-1053585 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 31 |
| Conread position: | 1-497 |
| Cow position: | chr6:28064339-28064840 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 81 |
| Conread position: | 1-497 |
| Cow position: | chr6:28550725-28550221 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 1-498 |
| Cow position: | chr6:12628262-12628755 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 138 |
| Conread position: | 1-498 |
| Cow position: | chr6:12663972-12663466 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 135 |
| Conread position: | 1-498 |
| Cow position: | chr6:24241632-24242140 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 2-447 |
| Cow position: | chr6:35723754-35724198 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 145 |
| Conread position: | 3-498 |
| Cow position: | chr6:18496669-18497168 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 100 |
| Conread position: | 4-489 |
| Cow position: | chr6:66561874-66562367 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 195 |
| Conread position: | 6-412 |
| Cow position: | chr6:25216649-25217062 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 139 |
| Conread position: | 7-336 |
| Cow position: | chr6:65896602-65896261 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 7-471 |
| Cow position: | chr6:31813650-31813175 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 138 |
| Conread position: | 10-499 |
| Cow position: | chr6:28103512-28103016 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 143 |
| Conread position: | 14-268 |
| Cow position: | chr6:6094592-6094851 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 151 |
| Conread position: | 14-481 |
| Cow position: | chr6:50570555-50571034 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 155 |
| Conread position: | 14-489 |
| Cow position: | chr6:183188-182700 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 139 |
| Conread position: | 14-489 |
| Cow position: | chr6:51716900-51717386 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 20-497 |
| Cow position: | chr6:34237657-34237171 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 125 |
| Conread position: | 20-498 |
| Cow position: | chr6:9840776-9840281 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 27-489 |
| Cow position: | chr6:6720363-6720822 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 28-489 |
| Cow position: | chr6:53936257-53935792 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 48, 5 |
| Conread position: | 34-499 |
| Cow position: | chr6:7192169-7191697 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 26 |
Show alignments to all cow chromosomes.