Cow genome map
| Conread name: | Pig1-87J20 |
| Conread position: | 1-246 |
| Cow position: | chr9:5453523-5453777 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-275 |
| Cow position: | chr9:1983089-1983371 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 1-275 |
| Cow position: | chr9:3577212-3576933 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 76, 189 |
| Conread position: | 1-275 |
| Cow position: | chr9:10324089-10324369 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 59, 110 |
| Conread position: | 1-298 |
| Cow position: | chr9:3729097-3729414 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 75, 211 |
| Conread position: | 1-332 |
| Cow position: | chr9:22474018-22473675 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-337 |
| Cow position: | chr9:6921484-6921136 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-348 |
| Cow position: | chr9:30829026-30829381 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 74, 164 |
| Conread position: | 1-356 |
| Cow position: | chr9:26421705-26421338 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-390 |
| Cow position: | chr9:3960870-3960474 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 1-434 |
| Cow position: | chr9:6251541-6251985 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 152 |
| Conread position: | 1-435 |
| Cow position: | chr9:37175075-37175520 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-453 |
| Cow position: | chr9:30489861-30490311 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 299 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 74, 191 |
| Conread position: | 1-457 |
| Cow position: | chr9:1639014-1639484 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 63 |
| Conread position: | 1-459 |
| Cow position: | chr9:11503943-11504411 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 152 |
| Conread position: | 1-463 |
| Cow position: | chr9:33950938-33950466 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 317 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-482 |
| Cow position: | chr9:30437984-30438472 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 394 |
| Conread position: | 1-489 |
| Cow position: | chr9:1098863-1099363 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 153 |
| Conread position: | 1-489 |
| Cow position: | chr9:1249723-1249228 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-489 |
| Cow position: | chr9:2680845-2681344 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 152 |
| Conread position: | 1-489 |
| Cow position: | chr9:2807086-2806593 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr9:7059792-7059293 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 1-489 |
| Cow position: | chr9:9367271-9367739 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 109 |
| Conread position: | 1-489 |
| Cow position: | chr9:10938994-10939493 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 1-489 |
| Cow position: | chr9:14002313-14002809 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 165 |
| Conread position: | 1-489 |
| Cow position: | chr9:16177865-16178363 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 1-489 |
| Cow position: | chr9:17303696-17303203 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 121 |
| Conread position: | 1-489 |
| Cow position: | chr9:18507556-18507055 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 1-489 |
| Cow position: | chr9:18538934-18539434 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 217 |
| Conread position: | 1-489 |
| Cow position: | chr9:21411580-21412081 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 1-489 |
| Cow position: | chr9:28024081-28024588 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 1-489 |
| Cow position: | chr9:28658778-28658280 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 1-489 |
| Cow position: | chr9:31809853-31810347 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 213 |
| Conread position: | 1-489 |
| Cow position: | chr9:32971648-32972136 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 1-489 |
| Cow position: | chr9:44167865-44168359 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 96 |
| Conread position: | 1-489 |
| Cow position: | chr9:47005012-47005510 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 326 |
| Conread position: | 1-489 |
| Cow position: | chr9:48796022-48795523 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 1-489 |
| Cow position: | chr9:52525428-52525920 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 201 |
| Conread position: | 1-489 |
| Cow position: | chr9:56176045-56176539 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 164 |
| Conread position: | 1-489 |
| Cow position: | chr9:59480578-59480079 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 1-490 |
| Cow position: | chr9:203020-202520 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 217 |
| Conread position: | 1-490 |
| Cow position: | chr9:1063428-1062925 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 124 |
| Conread position: | 1-490 |
| Cow position: | chr9:9198389-9198874 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 102 |
| Conread position: | 1-497 |
| Cow position: | chr9:22320433-22319927 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 145 |
| Conread position: | 1-497 |
| Cow position: | chr9:26082050-26081541 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 343 |
| Conread position: | 1-497 |
| Cow position: | chr9:27897290-27897788 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 145 |
| Conread position: | 1-497 |
| Cow position: | chr9:34240829-34240321 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 217 |
| Conread position: | 1-497 |
| Cow position: | chr9:35544258-35543750 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-498 |
| Cow position: | chr9:23420873-23421368 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 133 |
| Conread position: | 1-498 |
| Cow position: | chr9:55797827-55797326 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 140 |
| Conread position: | 1-498 |
| Cow position: | chr9:59508890-59508395 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 54 |
| Conread position: | 1-499 |
| Cow position: | chr9:35593809-35593314 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 169 |
| Conread position: | 1-499 |
| Cow position: | chr9:37067135-37067626 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 108 |
| Conread position: | 1-499 |
| Cow position: | chr9:61238669-61238173 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 217 |
| Conread position: | 3-348 |
| Cow position: | chr9:17900294-17899949 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 57, 133 |
| Conread position: | 4-488 |
| Cow position: | chr9:9015348-9015842 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 149 |
| Conread position: | 4-489 |
| Cow position: | chr9:5006250-5006752 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 141 |
| Conread position: | 5-489 |
| Cow position: | chr9:19077932-19078416 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 164 |
| Conread position: | 7-397 |
| Cow position: | chr9:43302943-43302542 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 146 |
| Conread position: | 7-489 |
| Cow position: | chr9:30674347-30674844 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 146 |
| Conread position: | 10-349 |
| Cow position: | chr9:47263020-47262676 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 14-488 |
| Cow position: | chr9:792029-791547 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 205 |
| Conread position: | 14-489 |
| Cow position: | chr9:31418220-31417735 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 131 |
| Conread position: | 15-299 |
| Cow position: | chr9:34770441-34770738 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 130 |
| Conread position: | 15-489 |
| Cow position: | chr9:3545112-3545596 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 201 |
| Conread position: | 15-498 |
| Cow position: | chr9:3412631-3412139 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 130 |
| Conread position: | 25-497 |
| Cow position: | chr9:26569563-26570040 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 314 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 45, 181 |
| Conread position: | 26-489 |
| Cow position: | chr9:53530045-53530492 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 29 |
| Conread position: | 27-489 |
| Cow position: | chr9:4306766-4306300 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 86 |
| Conread position: | 35-489 |
| Cow position: | chr9:1992231-1991766 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 134 |
| Conread position: | 37-499 |
| Cow position: | chr9:27291658-27291183 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 111 |
| Conread position: | 55-498 |
| Cow position: | chr9:46669320-46669756 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 98 |
| Conread position: | 74-489 |
| Cow position: | chr9:39729236-39728818 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 67 |
| Conread position: | 96-441 |
| Cow position: | chr9:26101051-26100711 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 88 |
Show alignments to all cow chromosomes.