Cow genome map

Conread name: Pig1-87J20

Conread position: 1-163
Cow position: chrX:41886821-41886654 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 36, 146

Conread position: 1-275
Cow position: chrX:30013174-30013457 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 186
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 74, 144

Conread position: 1-368
Cow position: chrX:24730829-24731208 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 249
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 74, 135

Conread position: 1-373
Cow position: chrX:24446029-24445645 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 246
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 74, 135

Conread position: 1-377
Cow position: chrX:34093648-34093260 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 257
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 74, 144

Conread position: 1-383
Cow position: chrX:21000384-21000785 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 276
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 81, 39

Conread position: 1-396
Cow position: chrX:30437086-30437492 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 274
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 74, 144

Conread position: 1-397
Cow position: chrX:38590002-38589604 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 133

Conread position: 1-414
Cow position: chrX:12652312-12651888 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 288
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 74, 135

Conread position: 1-437
Cow position: chrX:5392999-5392554 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 253
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 74, 217

Conread position: 1-445
Cow position: chrX:30072072-30072515 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 291
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 158, 27

Conread position: 1-451
Cow position: chrX:30976639-30976200 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 292
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 23, 55

Conread position: 1-463
Cow position: chrX:37945322-37944871 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 287
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 137, 39

Conread position: 1-463
Cow position: chrX:37950626-37951075 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 287
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 137, 39

Conread position: 1-467
Cow position: chrX:2047270-2047741 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 145

Conread position: 1-478
Cow position: chrX:731376-730889 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 213

Conread position: 1-482
Cow position: chrX:23573622-23573137 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 100

Conread position: 1-487
Cow position: chrX:17890725-17891220 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 144

Conread position: 1-488
Cow position: chrX:387317-387812 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 318
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 57, 31

Conread position: 1-488
Cow position: chrX:5333249-5332755 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 135

Conread position: 1-488
Cow position: chrX:7119671-7120170 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 144

Conread position: 1-488
Cow position: chrX:11458621-11458138 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 333
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 184, 74

Conread position: 1-488
Cow position: chrX:12345117-12345618 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 301

Conread position: 1-488
Cow position: chrX:20741448-20740952 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 112

Conread position: 1-489
Cow position: chrX:2486835-2487324 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 322
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 75, 213

Conread position: 1-489
Cow position: chrX:2560766-2560270 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chrX:2578605-2579098 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 212

Conread position: 1-489
Cow position: chrX:2814298-2813798 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 144

Conread position: 1-489
Cow position: chrX:3419039-3418540 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 217

Conread position: 1-489
Cow position: chrX:5321533-5321036 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 217

Conread position: 1-489
Cow position: chrX:5360188-5360687 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 135

Conread position: 1-489
Cow position: chrX:6580123-6580612 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chrX:7552627-7552124 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 152

Conread position: 1-489
Cow position: chrX:8481634-8482128 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 84

Conread position: 1-489
Cow position: chrX:10529608-10529107 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 144

Conread position: 1-489
Cow position: chrX:11147160-11146658 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chrX:11462814-11462316 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 397

Conread position: 1-489
Cow position: chrX:12308584-12308085 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 135

Conread position: 1-489
Cow position: chrX:12359069-12359562 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chrX:12464185-12464684 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 154

Conread position: 1-489
Cow position: chrX:15122976-15122484 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 60

Conread position: 1-489
Cow position: chrX:15978773-15978274 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 217

Conread position: 1-489
Cow position: chrX:16045150-16045649 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 217

Conread position: 1-489
Cow position: chrX:16701863-16702360 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 152

Conread position: 1-489
Cow position: chrX:18657622-18657127 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 164

Conread position: 1-489
Cow position: chrX:19397955-19398455 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chrX:19474969-19474471 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chrX:20357821-20357322 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 217

Conread position: 1-489
Cow position: chrX:20725152-20725648 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 152

Conread position: 1-489
Cow position: chrX:21225659-21226157 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 152

Conread position: 1-489
Cow position: chrX:21647096-21646598 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 121

Conread position: 1-489
Cow position: chrX:21766811-21767311 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chrX:22565506-22565007 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chrX:23388368-23387870 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 152

Conread position: 1-489
Cow position: chrX:23453873-23453375 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 152

Conread position: 1-489
Cow position: chrX:24412207-24412704 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 145

Conread position: 1-489
Cow position: chrX:24463245-24462761 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 37

Conread position: 1-489
Cow position: chrX:24770676-24770179 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 135

Conread position: 1-489
Cow position: chrX:26756461-26755962 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 152

Conread position: 1-489
Cow position: chrX:27591838-27591343 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 95

Conread position: 1-489
Cow position: chrX:28587160-28587660 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 144

Conread position: 1-489
Cow position: chrX:30090836-30090355 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 142

Conread position: 1-489
Cow position: chrX:30229932-30229434 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 90

Conread position: 1-489
Cow position: chrX:37814329-37814828 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 135

Conread position: 1-489
Cow position: chrX:43437725-43437222 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 217

Conread position: 1-490
Cow position: chrX:29878328-29877846 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 145

Conread position: 1-495
Cow position: chrX:41528622-41528128 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 27

Conread position: 1-497
Cow position: chrX:5281600-5281098 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 213

Conread position: 1-497
Cow position: chrX:14461497-14462007 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 135

Conread position: 1-497
Cow position: chrX:39696949-39697454 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 135

Conread position: 1-498
Cow position: chrX:28754158-28753650 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 144

Conread position: 1-498
Cow position: chrX:29095136-29094632 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 217

Conread position: 1-498
Cow position: chrX:35938845-35938354 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 172

Conread position: 1-498
Cow position: chrX:42008811-42009317 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 95

Conread position: 2-487
Cow position: chrX:29171601-29171105 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 133

Conread position: 3-139
Cow position: chrX:22590658-22590517 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 4-489
Cow position: chrX:1549162-1549642 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 150

Conread position: 7-359
Cow position: chrX:9127270-9127632 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 231
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 68, 146

Conread position: 7-461
Cow position: chrX:15177249-15176787 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 129

Conread position: 7-489
Cow position: chrX:4906806-4906318 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 137

Conread position: 7-490
Cow position: chrX:22810080-22810574 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 146

Conread position: 11-492
Cow position: chrX:18919838-18920324 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 319
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 65, 95

Conread position: 11-499
Cow position: chrX:35384632-35384152 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 21

Conread position: 12-497
Cow position: chrX:27304133-27304617 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 205

Conread position: 14-263
Cow position: chrX:4742854-4742595 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 16, 173

Conread position: 14-487
Cow position: chrX:19607868-19608352 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 131

Conread position: 14-487
Cow position: chrX:23133793-23134272 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 382

Conread position: 14-488
Cow position: chrX:21342603-21343072 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 90

Conread position: 14-489
Cow position: chrX:7754098-7754583 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 131

Conread position: 14-489
Cow position: chrX:26623617-26623128 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 46

Conread position: 14-489
Cow position: chrX:30181733-30181247 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 131

Conread position: 14-489
Cow position: chrX:36536538-36536052 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 131

Conread position: 18-498
Cow position: chrX:15992523-15992998 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 25

Conread position: 25-429
Cow position: chrX:29046649-29047059 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 242

Conread position: 34-495
Cow position: chrX:39565067-39564602 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 107

Conread position: 36-489
Cow position: chrX:1787797-1788235 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 25

Conread position: 40-498
Cow position: chrX:10413741-10413264 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 105

Conread position: 58-416
Cow position: chrX:30425477-30425846 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 136

Conread position: 72-489
Cow position: chrX:9403436-9403022 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 281
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 75, 91

Conread position: 74-489
Cow position: chrX:22331517-22331094 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 187

Show alignments to all cow chromosomes.