Cow genome map

Conread name: Pig1-92K11

Conread position: 1-120
Cow position: chr12:25933771-25933648 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 1-121
Cow position: chr12:39754369-39754249 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-125
Cow position: chr12:14855897-14855772 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 106
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 120, 0

Conread position: 1-128
Cow position: chr12:5497740-5497866 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 1-128
Cow position: chr12:45541794-45541667 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-135
Cow position: chr12:47063791-47063924 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 65, 0

Conread position: 1-141
Cow position: chr12:13657657-13657801 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 1-146
Cow position: chr12:18093976-18093831 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 29, 50

Conread position: 1-156
Cow position: chr12:17262938-17262783 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 1-179
Cow position: chr12:40715959-40716134 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 144
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 129, 16

Conread position: 1-183
Cow position: chr12:4583032-4582847 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 90, 142

Conread position: 1-185
Cow position: chr12:5658660-5658848 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 99, 75

Conread position: 1-188
Cow position: chr12:5680770-5680578 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 41, 34

Conread position: 1-193
Cow position: chr12:7996497-7996306 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 68, 41

Conread position: 1-209
Cow position: chr12:29691110-29691324 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 131, 190

Conread position: 1-210
Cow position: chr12:31528769-31528973 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 92, 153

Conread position: 1-239
Cow position: chr12:4020403-4020642 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 165
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 60, 117

Conread position: 1-240
Cow position: chr12:27038656-27038912 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 86

Conread position: 1-257
Cow position: chr12:25606793-25606533 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 68, 233

Conread position: 1-259
Cow position: chr12:245629-245869 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 188, 21

Conread position: 1-259
Cow position: chr12:30596555-30596292 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 71, 152

Conread position: 1-260
Cow position: chr12:25312287-25312548 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 39

Conread position: 1-260
Cow position: chr12:45225904-45226159 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 98, 19

Conread position: 1-261
Cow position: chr12:24559445-24559180 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 151

Conread position: 1-261
Cow position: chr12:25619292-25619554 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 19

Conread position: 1-261
Cow position: chr12:27055692-27055433 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 68, 39

Conread position: 1-261
Cow position: chr12:29448735-29448470 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 76, 141

Conread position: 1-261
Cow position: chr12:48425796-48425548 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 177, 78

Conread position: 1-262
Cow position: chr12:18768984-18769252 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 1-262
Cow position: chr12:30065021-30064769 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 194, 16

Conread position: 1-262
Cow position: chr12:35354851-35354611 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 166, 49

Conread position: 1-263
Cow position: chr12:41642518-41642253 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 50

Conread position: 1-265
Cow position: chr12:31198854-31198582 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 1-266
Cow position: chr12:16543491-16543754 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 201
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 22, 142

Conread position: 1-268
Cow position: chr12:44057601-44057320 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 164, 40

Conread position: 1-298
Cow position: chr12:15230730-15231030 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 68, 39

Conread position: 2-111
Cow position: chr12:28017131-28017023 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 66

Conread position: 2-119
Cow position: chr12:16205811-16205692 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 2-147
Cow position: chr12:7645723-7645866 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 115, 0

Conread position: 2-168
Cow position: chr12:18966671-18966837 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 99, 142

Conread position: 2-193
Cow position: chr12:24204227-24204417 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 157
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 25, 129

Conread position: 2-262
Cow position: chr12:1223260-1223523 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 18

Conread position: 3-182
Cow position: chr12:40931531-40931710 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 19

Conread position: 3-239
Cow position: chr12:17109811-17110045 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 179
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 187, 32

Conread position: 3-240
Cow position: chr12:14325188-14325423 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 187
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 59, 14

Conread position: 3-262
Cow position: chr12:5797480-5797722 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 22

Conread position: 4-269
Cow position: chr12:21829156-21828904 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 232, 80

Conread position: 5-261
Cow position: chr12:32413598-32413334 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 148

Conread position: 7-260
Cow position: chr12:23379652-23379397 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 191, 37

Conread position: 8-260
Cow position: chr12:3756968-3757215 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 187, 9

Conread position: 8-261
Cow position: chr12:1505098-1504845 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 189
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 6, 18

Conread position: 8-262
Cow position: chr12:27496080-27495831 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 186, 9

Conread position: 8-266
Cow position: chr12:21861728-21861969 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 187, 29

Conread position: 9-261
Cow position: chr12:3212396-3212149 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 177, 134

Conread position: 9-262
Cow position: chr12:30688412-30688164 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 186, 80

Conread position: 11-259
Cow position: chr12:5899587-5899357 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 184, 16

Conread position: 11-262
Cow position: chr12:31429494-31429748 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 31, 24

Conread position: 12-193
Cow position: chr12:31372511-31372337 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 77, 0

Conread position: 12-253
Cow position: chr12:3134431-3134664 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 183, 76

Conread position: 12-262
Cow position: chr12:37728220-37727963 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 172
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 140

Conread position: 12-262
Cow position: chr12:37732704-37732961 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 140

Conread position: 13-239
Cow position: chr12:1357364-1357580 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 126, 70

Conread position: 13-261
Cow position: chr12:6410659-6410909 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 171
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 48, 141

Conread position: 13-262
Cow position: chr12:40910211-40910467 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 25

Conread position: 22-249
Cow position: chr12:20479272-20479490 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 69

Conread position: 23-260
Cow position: chr12:47799758-47799998 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 218

Conread position: 25-261
Cow position: chr12:28559357-28559122 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 77, 96

Conread position: 26-261
Cow position: chr12:8595961-8595715 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 72, 6

Conread position: 28-262
Cow position: chr12:8868821-8869055 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 11, 43

Conread position: 30-194
Cow position: chr12:18553067-18552912 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 37, 0

Conread position: 30-240
Cow position: chr12:39343788-39343598 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 95, 36

Conread position: 32-240
Cow position: chr12:38484338-38484548 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 55

Conread position: 33-193
Cow position: chr12:39282939-39283094 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 12, 98

Conread position: 33-255
Cow position: chr12:14523986-14523771 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 28, 112

Conread position: 34-262
Cow position: chr12:18963873-18964105 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 8, 110

Conread position: 34-263
Cow position: chr12:1488103-1487861 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 35-240
Cow position: chr12:44743546-44743343 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 92, 113

Conread position: 45-146
Cow position: chr12:5735355-5735456 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 46-187
Cow position: chr12:33756870-33757014 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 53, 23

Conread position: 55-244
Cow position: chr12:20312140-20312335 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 29, 0

Conread position: 61-263
Cow position: chr12:40028728-40028939 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 91-248
Cow position: chr12:16631926-16631770 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 49

Conread position: 91-261
Cow position: chr12:16851014-16851186 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 104, 123

Conread position: 93-263
Cow position: chr12:29921795-29921961 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 102, 45

Conread position: 107-259
Cow position: chr12:34089820-34089665 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 91, 51

Conread position: 115-262
Cow position: chr12:6117873-6117724 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 124
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 80, 95

Conread position: 116-266
Cow position: chr12:34103164-34103316 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 119-262
Cow position: chr12:12938955-12939104 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 125-262
Cow position: chr12:18417530-18417389 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 70, 33

Conread position: 136-263
Cow position: chr12:35807630-35807502 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 60, 111

Conread position: 143-263
Cow position: chr12:11696623-11696500 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 106
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 55, 0

Conread position: 152-262
Cow position: chr12:35985072-35984957 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 43, 0

Show alignments to all cow chromosomes.