Cow genome map

Conread name: Pig1-92K11

Conread position: 1-97
Cow position: chr20:21518813-21518720 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 84
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 1-121
Cow position: chr20:23604567-23604687 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-149
Cow position: chr20:35924618-35924765 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 0

Conread position: 1-150
Cow position: chr20:2456196-2456047 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-150
Cow position: chr20:7386718-7386574 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 0

Conread position: 1-154
Cow position: chr20:40355289-40355143 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 1-159
Cow position: chr20:13608901-13609058 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 132
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 141, 0

Conread position: 1-161
Cow position: chr20:4933903-4934064 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 16

Conread position: 1-191
Cow position: chr20:5763126-5763320 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 98, 151

Conread position: 1-206
Cow position: chr20:19865415-19865213 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 113

Conread position: 1-209
Cow position: chr20:32668138-32667931 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 64, 68

Conread position: 1-210
Cow position: chr20:6903482-6903272 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 60, 142

Conread position: 1-214
Cow position: chr20:24643982-24644195 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 144
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 197, 88

Conread position: 1-218
Cow position: chr20:35842959-35843180 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 61, 16

Conread position: 1-229
Cow position: chr20:10759304-10759533 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 44, 200

Conread position: 1-230
Cow position: chr20:42255026-42254794 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 98, 8

Conread position: 1-234
Cow position: chr20:17397097-17397325 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 1-237
Cow position: chr20:25274125-25274359 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 76

Conread position: 1-242
Cow position: chr20:30855593-30855831 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 186
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 194, 19

Conread position: 1-256
Cow position: chr20:13494677-13494421 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 123, 100

Conread position: 1-256
Cow position: chr20:39656410-39656159 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 39

Conread position: 1-260
Cow position: chr20:23834282-23834035 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 63, 25

Conread position: 1-261
Cow position: chr20:17670350-17670090 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 96, 16

Conread position: 1-261
Cow position: chr20:38858267-38858508 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 236, 9

Conread position: 1-262
Cow position: chr20:220776-220523 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 65

Conread position: 1-262
Cow position: chr20:8262083-8261814 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 16

Conread position: 1-262
Cow position: chr20:14679784-14679519 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 16

Conread position: 1-262
Cow position: chr20:23235198-23234938 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 108

Conread position: 1-262
Cow position: chr20:25686180-25686445 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 60, 124

Conread position: 1-262
Cow position: chr20:26880731-26881008 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 209
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 86, 153

Conread position: 1-262
Cow position: chr20:30648033-30648304 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 151

Conread position: 1-263
Cow position: chr20:27001553-27001294 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 16

Conread position: 1-266
Cow position: chr20:20359614-20359879 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 70, 143

Conread position: 2-116
Cow position: chr20:35683239-35683353 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 2-192
Cow position: chr20:26750047-26750231 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 23, 0

Conread position: 2-193
Cow position: chr20:14362981-14363163 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 150
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 39, 0

Conread position: 2-261
Cow position: chr20:4204452-4204200 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 39, 26

Conread position: 2-266
Cow position: chr20:32861834-32862093 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 90, 64

Conread position: 3-170
Cow position: chr20:23163737-23163905 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 82

Conread position: 3-248
Cow position: chr20:1205771-1206016 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 65, 73

Conread position: 4-154
Cow position: chr20:4157584-4157433 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 137

Conread position: 4-262
Cow position: chr20:7182521-7182770 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 8, 62

Conread position: 4-262
Cow position: chr20:10838047-10838314 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 57, 118

Conread position: 4-262
Cow position: chr20:34901734-34901472 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 12, 21

Conread position: 6-127
Cow position: chr20:37450712-37450587 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 7-261
Cow position: chr20:25823438-25823186 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 88, 60

Conread position: 7-262
Cow position: chr20:19339719-19339970 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 69

Conread position: 8-210
Cow position: chr20:7526879-7527075 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 190, 43

Conread position: 9-188
Cow position: chr20:24849968-24849787 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 146

Conread position: 9-232
Cow position: chr20:20094977-20095203 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 42, 81

Conread position: 10-216
Cow position: chr20:13961430-13961632 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 100, 10

Conread position: 10-268
Cow position: chr20:29308353-29308607 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 83

Conread position: 11-248
Cow position: chr20:6424127-6423889 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 139

Conread position: 11-262
Cow position: chr20:18530593-18530351 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 108

Conread position: 12-262
Cow position: chr20:26077239-26076987 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 195
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 57, 118

Conread position: 12-262
Cow position: chr20:34178321-34178573 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 18

Conread position: 13-246
Cow position: chr20:18392115-18392342 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 97

Conread position: 13-262
Cow position: chr20:33178362-33178617 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 74, 0

Conread position: 19-260
Cow position: chr20:12676579-12676349 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 176, 18

Conread position: 22-232
Cow position: chr20:19266300-19266088 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 172, 0

Conread position: 22-261
Cow position: chr20:15073690-15073928 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 69, 114

Conread position: 26-265
Cow position: chr20:37028966-37028721 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 62, 176

Conread position: 28-262
Cow position: chr20:18491299-18491088 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 50

Conread position: 30-262
Cow position: chr20:13821440-13821679 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 27, 42

Conread position: 31-261
Cow position: chr20:20471921-20471695 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 68, 38

Conread position: 33-252
Cow position: chr20:17765195-17765420 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 120

Conread position: 34-261
Cow position: chr20:5576910-5576672 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 179
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 65, 0

Conread position: 40-261
Cow position: chr20:12430670-12430891 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 22, 34

Conread position: 42-261
Cow position: chr20:24234281-24234065 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 195, 138

Conread position: 42-261
Cow position: chr20:38124014-38123794 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 57, 114

Conread position: 42-262
Cow position: chr20:35797736-35797512 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 27, 213

Conread position: 43-267
Cow position: chr20:11482008-11482237 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 110

Conread position: 44-259
Cow position: chr20:7600655-7600876 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 12

Conread position: 50-262
Cow position: chr20:11355340-11355121 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 15, 70

Conread position: 68-249
Cow position: chr20:2801994-2802174 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 62, 66

Conread position: 87-262
Cow position: chr20:37609307-37609134 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 105, 13

Conread position: 88-260
Cow position: chr20:26315519-26315685 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 140
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 153, 103

Conread position: 92-261
Cow position: chr20:24868959-24869120 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 102, 0

Conread position: 92-262
Cow position: chr20:10033847-10034020 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 102, 0

Conread position: 92-262
Cow position: chr20:32577845-32578017 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 131

Conread position: 105-235
Cow position: chr20:14996448-14996576 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 90, 49

Conread position: 111-261
Cow position: chr20:14831559-14831708 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 54, 0

Conread position: 116-262
Cow position: chr20:12041096-12041241 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 79

Conread position: 134-239
Cow position: chr20:7062415-7062308 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 134-259
Cow position: chr20:15918017-15917888 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 82

Conread position: 147-262
Cow position: chr20:14471525-14471643 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 53, 12

Conread position: 156-262
Cow position: chr20:15576876-15576985 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 0

Show alignments to all cow chromosomes.