Cow genome map

Conread name: Pig1-92K11

Conread position: 1-93
Cow position: chr21:23974088-23974179 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 1-117
Cow position: chr21:18782419-18782306 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 1-122
Cow position: chr21:17806949-17807070 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 104
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-122
Cow position: chr21:37121024-37121142 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 1-136
Cow position: chr21:27480633-27480498 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 36, 92

Conread position: 1-140
Cow position: chr21:8282451-8282321 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 74, 0

Conread position: 1-146
Cow position: chr21:13418046-13418191 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-186
Cow position: chr21:13256325-13256497 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 52, 0

Conread position: 1-209
Cow position: chr21:37718261-37718467 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 168
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 194, 24

Conread position: 1-216
Cow position: chr21:39509201-39509419 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 93, 25

Conread position: 1-218
Cow position: chr21:26753680-26753464 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 61, 130

Conread position: 1-228
Cow position: chr21:24698669-24698438 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 1-234
Cow position: chr21:36371671-36371435 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 16

Conread position: 1-239
Cow position: chr21:3254340-3254099 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 60, 79

Conread position: 1-239
Cow position: chr21:37848412-37848185 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 33, 132

Conread position: 1-245
Cow position: chr21:33947065-33947310 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 0

Conread position: 1-246
Cow position: chr21:47715357-47715604 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 92, 39

Conread position: 1-248
Cow position: chr21:12301323-12301568 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 62, 11

Conread position: 1-257
Cow position: chr21:15239467-15239203 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 194, 140

Conread position: 1-258
Cow position: chr21:18379027-18378771 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 63, 102

Conread position: 1-259
Cow position: chr21:9353636-9353371 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 1-259
Cow position: chr21:21181365-21181103 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 88, 27

Conread position: 1-261
Cow position: chr21:4099058-4098794 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 1-261
Cow position: chr21:6316401-6316134 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 21

Conread position: 1-261
Cow position: chr21:15741896-15742174 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 68, 144

Conread position: 1-261
Cow position: chr21:25286702-25286438 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 39

Conread position: 1-261
Cow position: chr21:31576680-31576435 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 1-261
Cow position: chr21:31662192-31661930 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 145

Conread position: 1-261
Cow position: chr21:34565026-34565284 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 75

Conread position: 1-261
Cow position: chr21:46242052-46242312 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 60, 56

Conread position: 1-262
Cow position: chr21:11675865-11676120 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 0

Conread position: 1-262
Cow position: chr21:12087784-12087517 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 64, 120

Conread position: 1-262
Cow position: chr21:18941646-18941906 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 61, 45

Conread position: 1-262
Cow position: chr21:21140692-21140451 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 39, 0

Conread position: 1-262
Cow position: chr21:21223469-21223217 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 7

Conread position: 1-262
Cow position: chr21:25800588-25800319 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 88, 0

Conread position: 1-262
Cow position: chr21:31200347-31200097 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 203
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 191, 16

Conread position: 1-262
Cow position: chr21:31662656-31662388 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 195
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 61, 157

Conread position: 1-262
Cow position: chr21:35997360-35997097 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 129

Conread position: 1-262
Cow position: chr21:44754601-44754849 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 54, 0

Conread position: 1-262
Cow position: chr21:46551913-46552182 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 44, 143

Conread position: 2-110
Cow position: chr21:7186981-7186878 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 2-116
Cow position: chr21:9588411-9588299 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 2-140
Cow position: chr21:49654255-49654116 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 10

Conread position: 2-260
Cow position: chr21:4723668-4723408 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 91, 191

Conread position: 2-262
Cow position: chr21:41514981-41514728 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 64

Conread position: 2-262
Cow position: chr21:45356021-45355760 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 59, 142

Conread position: 2-266
Cow position: chr21:23800941-23801208 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 196
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 59, 18

Conread position: 3-213
Cow position: chr21:11019579-11019358 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 169
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 50, 164

Conread position: 3-245
Cow position: chr21:31004489-31004718 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 48, 131

Conread position: 3-268
Cow position: chr21:6058461-6058721 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 233, 47

Conread position: 4-261
Cow position: chr21:44093948-44093706 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 193
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 190, 49

Conread position: 4-266
Cow position: chr21:48290872-48291121 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 238, 77

Conread position: 5-248
Cow position: chr21:47823084-47823337 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 88, 0

Conread position: 5-262
Cow position: chr21:2056857-2057117 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 66, 153

Conread position: 6-246
Cow position: chr21:23397663-23397905 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 145

Conread position: 7-193
Cow position: chr21:1885608-1885797 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 77, 139

Conread position: 7-262
Cow position: chr21:30835547-30835286 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 7, 29

Conread position: 8-248
Cow position: chr21:41583450-41583208 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 155, 20

Conread position: 11-178
Cow position: chr21:23768049-23767879 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 82, 140

Conread position: 11-259
Cow position: chr21:23786210-23785956 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 186
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 88, 144

Conread position: 11-262
Cow position: chr21:8206949-8206696 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 24

Conread position: 13-262
Cow position: chr21:23587058-23586804 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 170
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 12

Conread position: 13-262
Cow position: chr21:26245091-26244844 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 29, 22

Conread position: 13-262
Cow position: chr21:36795780-36795524 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 146

Conread position: 14-261
Cow position: chr21:1059251-1059002 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 166
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 48, 113

Conread position: 14-262
Cow position: chr21:49649804-49649558 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 182, 62

Conread position: 14-270
Cow position: chr21:11520892-11521131 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 18, 13

Conread position: 15-218
Cow position: chr21:37845588-37845793 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 158
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 66, 104

Conread position: 16-258
Cow position: chr21:1511463-1511219 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 46, 137

Conread position: 18-259
Cow position: chr21:32903983-32904228 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 81, 0

Conread position: 20-261
Cow position: chr21:45923486-45923719 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 109, 0

Conread position: 22-209
Cow position: chr21:8184446-8184259 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 148
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 171, 61

Conread position: 22-258
Cow position: chr21:40266289-40266049 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 117

Conread position: 22-263
Cow position: chr21:13737221-13736976 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 147
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 47, 28

Conread position: 26-259
Cow position: chr21:24865307-24865087 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 168, 14

Conread position: 28-262
Cow position: chr21:9416414-9416170 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 43

Conread position: 28-262
Cow position: chr21:13365505-13365262 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 167
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 132

Conread position: 28-262
Cow position: chr21:19258981-19258753 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 112

Conread position: 28-262
Cow position: chr21:28733750-28733988 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 163
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 129

Conread position: 32-262
Cow position: chr21:28997749-28997978 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 32

Conread position: 34-210
Cow position: chr21:8420780-8420599 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 65, 34

Conread position: 35-262
Cow position: chr21:35062237-35062016 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 175
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 160, 0

Conread position: 37-262
Cow position: chr21:42841444-42841674 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 25, 129

Conread position: 40-231
Cow position: chr21:38774339-38774139 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 0

Conread position: 40-261
Cow position: chr21:47190-46962 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 125

Conread position: 41-262
Cow position: chr21:32574879-32574642 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 128

Conread position: 48-259
Cow position: chr21:23499687-23499897 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 112, 91

Conread position: 50-262
Cow position: chr21:6621179-6621396 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 166
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 22, 88

Conread position: 58-262
Cow position: chr21:28993490-28993698 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 88, 31

Conread position: 61-208
Cow position: chr21:9400634-9400786 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 86

Conread position: 61-262
Cow position: chr21:33997099-33997302 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 95

Conread position: 73-240
Cow position: chr21:44764323-44764489 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 122, 66

Conread position: 92-262
Cow position: chr21:30150170-30150342 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 33, 61

Conread position: 95-262
Cow position: chr21:12461877-12462046 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 97, 122

Conread position: 102-260
Cow position: chr21:49662038-49662192 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 93, 119

Conread position: 108-262
Cow position: chr21:20426607-20426455 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 102, 115

Conread position: 110-261
Cow position: chr21:2412838-2412687 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 84, 26

Conread position: 118-269
Cow position: chr21:8289563-8289720 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 35, 56

Conread position: 134-262
Cow position: chr21:7156815-7156691 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 104, 61

Conread position: 134-262
Cow position: chr21:28944312-28944440 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 36

Conread position: 135-262
Cow position: chr21:5426026-5425903 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 102, 51

Show alignments to all cow chromosomes.