Cow genome map
| Conread name: | Pig1-92K11 |
| Conread position: | 1-100 |
| Cow position: | chr27:21991363-21991461 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-114 |
| Cow position: | chr27:18219229-18219342 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-124 |
| Cow position: | chr27:11746420-11746547 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-128 |
| Cow position: | chr27:16526009-16525882 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-141 |
| Cow position: | chr27:10119251-10119103 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-158 |
| Cow position: | chr27:13958512-13958352 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 92, 156 |
| Conread position: | 1-188 |
| Cow position: | chr27:12247518-12247698 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-196 |
| Cow position: | chr27:13977714-13977513 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 1-205 |
| Cow position: | chr27:1536895-1536678 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1-210 |
| Cow position: | chr27:9562502-9562297 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 16 |
| Conread position: | 1-215 |
| Cow position: | chr27:25982886-25982678 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 184, 16 |
| Conread position: | 1-215 |
| Cow position: | chr27:30811284-30811500 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 7, 80 |
| Conread position: | 1-248 |
| Cow position: | chr27:25970239-25970474 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 236, 39 |
| Conread position: | 1-250 |
| Cow position: | chr27:19083885-19083629 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 94, 151 |
| Conread position: | 1-255 |
| Cow position: | chr27:16493418-16493659 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 236, 16 |
| Conread position: | 1-255 |
| Cow position: | chr27:23662761-23662519 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 189, 128 |
| Conread position: | 1-257 |
| Cow position: | chr27:24225067-24224811 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 97, 118 |
| Conread position: | 1-258 |
| Cow position: | chr27:25998533-25998793 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 151 |
| Conread position: | 1-259 |
| Cow position: | chr27:24341736-24341992 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 98, 133 |
| Conread position: | 1-261 |
| Cow position: | chr27:27050076-27049816 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 93, 36 |
| Conread position: | 1-261 |
| Cow position: | chr27:29039110-29038848 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 1-262 |
| Cow position: | chr27:19648111-19647843 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 61, 114 |
| Conread position: | 1-262 |
| Cow position: | chr27:30790304-30790543 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 1-263 |
| Cow position: | chr27:8048900-8048643 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 39 |
| Conread position: | 1-263 |
| Cow position: | chr27:19601206-19601474 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 19 |
| Conread position: | 1-265 |
| Cow position: | chr27:30365150-30365410 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 150 |
| Conread position: | 2-120 |
| Cow position: | chr27:27867829-27867711 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 7, 108 |
| Conread position: | 2-232 |
| Cow position: | chr27:8272843-8273080 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 2-240 |
| Cow position: | chr27:12244292-12244051 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 97, 8 |
| Conread position: | 2-260 |
| Cow position: | chr27:26492862-26492610 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 152, 35 |
| Conread position: | 2-261 |
| Cow position: | chr27:8430606-8430347 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 61, 138 |
| Conread position: | 2-261 |
| Cow position: | chr27:20766120-20765866 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 2-261 |
| Cow position: | chr27:21681492-21681241 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 94, 38 |
| Conread position: | 2-266 |
| Cow position: | chr27:21138663-21138922 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 136 |
| Conread position: | 3-154 |
| Cow position: | chr27:21971048-21970899 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 3-167 |
| Cow position: | chr27:21578741-21578576 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 145 |
| Conread position: | 3-231 |
| Cow position: | chr27:22108372-22108147 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 3-258 |
| Cow position: | chr27:14937595-14937332 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 14 |
| Conread position: | 3-260 |
| Cow position: | chr27:6454044-6454305 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 3-261 |
| Cow position: | chr27:26441214-26440965 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 194, 91 |
| Conread position: | 3-261 |
| Cow position: | chr27:27053129-27053388 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 82, 155 |
| Conread position: | 3-262 |
| Cow position: | chr27:11416285-11416545 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 145 |
| Conread position: | 4-131 |
| Cow position: | chr27:25879937-25880067 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 4-209 |
| Cow position: | chr27:783541-783745 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 191, 12 |
| Conread position: | 5-262 |
| Cow position: | chr27:10086834-10086588 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 7, 61 |
| Conread position: | 7-227 |
| Cow position: | chr27:27842069-27841847 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 88, 130 |
| Conread position: | 8-222 |
| Cow position: | chr27:12913989-12913770 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 8-262 |
| Cow position: | chr27:14874497-14874735 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 187, 53 |
| Conread position: | 8-262 |
| Cow position: | chr27:23659484-23659240 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 112, 9 |
| Conread position: | 8-262 |
| Cow position: | chr27:30560764-30561009 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 187, 63 |
| Conread position: | 9-219 |
| Cow position: | chr27:15523958-15523749 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 128 |
| Conread position: | 11-259 |
| Cow position: | chr27:24509660-24509910 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 132 |
| Conread position: | 11-261 |
| Cow position: | chr27:13005691-13005932 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 187, 50 |
| Conread position: | 11-261 |
| Cow position: | chr27:26299684-26299932 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 86, 114 |
| Conread position: | 13-259 |
| Cow position: | chr27:26161348-26161589 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 14-262 |
| Cow position: | chr27:464816-465054 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 177, 81 |
| Conread position: | 19-262 |
| Cow position: | chr27:15319309-15319543 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 19-262 |
| Cow position: | chr27:19544071-19543809 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 22-232 |
| Cow position: | chr27:2354917-2354708 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 77, 174 |
| Conread position: | 25-259 |
| Cow position: | chr27:4664334-4664565 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 46, 173 |
| Conread position: | 26-193 |
| Cow position: | chr27:19869686-19869854 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 26-241 |
| Cow position: | chr27:23959160-23959367 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 168, 52 |
| Conread position: | 26-257 |
| Cow position: | chr27:11356681-11356450 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 122, 128 |
| Conread position: | 26-261 |
| Cow position: | chr27:1058820-1058588 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 26-261 |
| Cow position: | chr27:25471005-25471231 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 26-264 |
| Cow position: | chr27:23600129-23600366 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 91, 69 |
| Conread position: | 28-262 |
| Cow position: | chr27:10992214-10992450 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 13, 178 |
| Conread position: | 30-240 |
| Cow position: | chr27:4007396-4007185 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 60, 127 |
| Conread position: | 31-262 |
| Cow position: | chr27:19577536-19577771 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 33-262 |
| Cow position: | chr27:20749148-20748913 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 168 |
| Conread position: | 33-270 |
| Cow position: | chr27:22559961-22559717 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 34-263 |
| Cow position: | chr27:30868877-30868645 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 8, 124 |
| Conread position: | 37-255 |
| Cow position: | chr27:6159848-6160072 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 42-181 |
| Cow position: | chr27:13970513-13970374 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-247 |
| Cow position: | chr27:12425042-12424836 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 77-193 |
| Cow position: | chr27:16563498-16563613 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 95-239 |
| Cow position: | chr27:18060215-18060353 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 43 |
| Conread position: | 106-262 |
| Cow position: | chr27:9692109-9691956 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 130, 14 |
| Conread position: | 110-266 |
| Cow position: | chr27:30518624-30518776 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 154, 15 |
| Conread position: | 116-262 |
| Cow position: | chr27:16580568-16580718 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 120-262 |
| Cow position: | chr27:19637593-19637737 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 94 |
| Conread position: | 132-261 |
| Cow position: | chr27:12231947-12231814 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 136-260 |
| Cow position: | chr27:18948623-18948500 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 139-266 |
| Cow position: | chr27:6037094-6037224 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 139-266 |
| Cow position: | chr27:6620115-6620245 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 122 |
Show alignments to all cow chromosomes.