Cow genome map
| Conread name: | Pig1-92K11 |
| Conread position: | 1-150 |
| Cow position: | chr28:8789280-8789134 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-152 |
| Cow position: | chr28:31373236-31373084 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 16 |
| Conread position: | 1-155 |
| Cow position: | chr28:1608321-1608160 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 147 |
| Conread position: | 1-164 |
| Cow position: | chr28:9294363-9294530 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 137 |
| Conread position: | 1-170 |
| Cow position: | chr28:8336091-8335919 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 146 |
| Conread position: | 1-175 |
| Cow position: | chr28:6993488-6993656 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-193 |
| Cow position: | chr28:7540029-7540223 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 93, 19 |
| Conread position: | 1-209 |
| Cow position: | chr28:25340400-25340201 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 9 |
| Conread position: | 1-211 |
| Cow position: | chr28:7805292-7805507 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 129 |
| Conread position: | 1-220 |
| Cow position: | chr28:19253609-19253386 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 98, 27 |
| Conread position: | 1-235 |
| Cow position: | chr28:9237443-9237207 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 98, 67 |
| Conread position: | 1-239 |
| Cow position: | chr28:1202115-1202348 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 1-239 |
| Cow position: | chr28:33485776-33485517 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 1-240 |
| Cow position: | chr28:19133904-19133683 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-248 |
| Cow position: | chr28:5406680-5406433 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 139, 16 |
| Conread position: | 1-258 |
| Cow position: | chr28:9821841-9822108 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 21 |
| Conread position: | 1-258 |
| Cow position: | chr28:11500755-11501020 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 11 |
| Conread position: | 1-258 |
| Cow position: | chr28:32844804-32845064 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 60, 86 |
| Conread position: | 1-259 |
| Cow position: | chr28:23668651-23668917 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 77, 130 |
| Conread position: | 1-259 |
| Cow position: | chr28:25825736-25826002 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 1-261 |
| Cow position: | chr28:3769541-3769795 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 160, 46 |
| Conread position: | 1-261 |
| Cow position: | chr28:4764009-4763741 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-261 |
| Cow position: | chr28:5474903-5475163 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 90, 29 |
| Conread position: | 1-261 |
| Cow position: | chr28:15678016-15677760 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 67, 152 |
| Conread position: | 1-261 |
| Cow position: | chr28:20963399-20963662 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 60, 159 |
| Conread position: | 1-261 |
| Cow position: | chr28:32300232-32300493 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 1-262 |
| Cow position: | chr28:11007330-11007046 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-262 |
| Cow position: | chr28:29455541-29455791 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 39 |
| Conread position: | 1-262 |
| Cow position: | chr28:33284980-33285247 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 218 |
| Conread position: | 1-266 |
| Cow position: | chr28:15081792-15082063 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 93, 124 |
| Conread position: | 1-269 |
| Cow position: | chr28:21873889-21873631 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 93, 133 |
| Conread position: | 1-271 |
| Cow position: | chr28:14508239-14508512 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 60, 138 |
| Conread position: | 2-193 |
| Cow position: | chr28:11200762-11200933 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 2-193 |
| Cow position: | chr28:31165854-31166049 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 2-215 |
| Cow position: | chr28:34198979-34199195 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 147 |
| Conread position: | 2-261 |
| Cow position: | chr28:25564211-25563947 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 19 |
| Conread position: | 4-236 |
| Cow position: | chr28:12046786-12047021 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 67, 195 |
| Conread position: | 5-181 |
| Cow position: | chr28:11181036-11181216 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 88, 143 |
| Conread position: | 8-146 |
| Cow position: | chr28:33324195-33324058 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 8-245 |
| Cow position: | chr28:13255752-13255994 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 111 |
| Conread position: | 9-260 |
| Cow position: | chr28:4274722-4274975 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 166 |
| Conread position: | 9-260 |
| Cow position: | chr28:23621656-23621415 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 84, 26 |
| Conread position: | 9-266 |
| Cow position: | chr28:23230962-23231205 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 81, 28 |
| Conread position: | 11-177 |
| Cow position: | chr28:12999214-12999047 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 11-182 |
| Cow position: | chr28:20275248-20275074 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 88, 54 |
| Conread position: | 12-260 |
| Cow position: | chr28:6643164-6643409 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 86, 134 |
| Conread position: | 12-262 |
| Cow position: | chr28:23007611-23007868 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 13-262 |
| Cow position: | chr28:5144403-5144656 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 13-262 |
| Cow position: | chr28:18934572-18934321 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 13-262 |
| Cow position: | chr28:19025887-19026146 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 239 |
| Conread position: | 26-209 |
| Cow position: | chr28:4406349-4406170 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 117, 42 |
| Conread position: | 26-262 |
| Cow position: | chr28:13693854-13693616 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 27-261 |
| Cow position: | chr28:2814405-2814633 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 37, 111 |
| Conread position: | 28-262 |
| Cow position: | chr28:5436985-5437222 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 28-262 |
| Cow position: | chr28:9285273-9285508 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 52 |
| Conread position: | 28-265 |
| Cow position: | chr28:21570293-21570051 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 30-262 |
| Cow position: | chr28:7607336-7607097 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 32-261 |
| Cow position: | chr28:4098929-4098709 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 121 |
| Conread position: | 33-266 |
| Cow position: | chr28:10035484-10035260 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 203, 35 |
| Conread position: | 34-229 |
| Cow position: | chr28:17153848-17153668 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 151, 19 |
| Conread position: | 34-259 |
| Cow position: | chr28:9176658-9176883 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 37-262 |
| Cow position: | chr28:11379946-11380173 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 98 |
| Conread position: | 46-262 |
| Cow position: | chr28:16687111-16686896 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 47-261 |
| Cow position: | chr28:15577178-15577394 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 56-260 |
| Cow position: | chr28:10641959-10642150 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 139, 31 |
| Conread position: | 66-262 |
| Cow position: | chr28:18462548-18462745 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 68-262 |
| Cow position: | chr28:12942440-12942241 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 73-262 |
| Cow position: | chr28:26901016-26901205 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 106, 15 |
| Conread position: | 79-260 |
| Cow position: | chr28:14218424-14218611 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 95-259 |
| Cow position: | chr28:9851644-9851490 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 100, 44 |
| Conread position: | 95-261 |
| Cow position: | chr28:15498174-15498347 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 114-262 |
| Cow position: | chr28:31971741-31971890 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 157-258 |
| Cow position: | chr28:29073780-29073882 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 160-261 |
| Cow position: | chr28:28414643-28414539 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.