Cow genome map
| Conread name: | Pig1-92K18 |
| Conread position: | 1-323 |
| Cow position: | chr11:43897780-43898100 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 229 |
| Conread position: | 1-414 |
| Cow position: | chr11:27681145-27681553 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 1-551 |
| Cow position: | chr11:81337321-81336805 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 36 |
| Conread position: | 4-452 |
| Cow position: | chr11:70522194-70521743 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 254 |
| Conread position: | 7-549 |
| Cow position: | chr11:83763488-83764017 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 7-571 |
| Cow position: | chr11:80002687-80003232 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 71 |
| Conread position: | 7-585 |
| Cow position: | chr11:29014037-29014599 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 59 |
| Conread position: | 8-423 |
| Cow position: | chr11:35252335-35251934 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 61, 34 |
| Conread position: | 11-400 |
| Cow position: | chr11:58614308-58614698 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 225 |
| Conread position: | 47-434 |
| Cow position: | chr11:62019910-62019516 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 70-347 |
| Cow position: | chr11:12175115-12174846 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 34, 77 |
| Conread position: | 78-397 |
| Cow position: | chr11:23258908-23258604 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 83-428 |
| Cow position: | chr11:58312966-58313305 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 83-496 |
| Cow position: | chr11:43989544-43989147 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 297 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 84-420 |
| Cow position: | chr11:42519471-42519792 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 49, 139 |
| Conread position: | 85-428 |
| Cow position: | chr11:17192554-17192215 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 142 |
| Conread position: | 86-572 |
| Cow position: | chr11:33935000-33934530 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 143 |
| Conread position: | 92-428 |
| Cow position: | chr11:65159711-65159387 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 10, 80 |
| Conread position: | 103-440 |
| Cow position: | chr11:10876986-10877322 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 30, 123 |
| Conread position: | 219-571 |
| Cow position: | chr11:79848339-79848007 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 226-578 |
| Cow position: | chr11:9063373-9063026 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 80, 139 |
| Conread position: | 229-489 |
| Cow position: | chr11:67293771-67293522 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 242-426 |
| Cow position: | chr11:48484257-48484080 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 246-444 |
| Cow position: | chr11:34024751-34024946 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 252-585 |
| Cow position: | chr11:64082976-64083304 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 253-521 |
| Cow position: | chr11:54264895-54265158 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 253-550 |
| Cow position: | chr11:26585845-26586137 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 259-504 |
| Cow position: | chr11:21893282-21893049 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 126, 13 |
| Conread position: | 260-576 |
| Cow position: | chr11:3266248-3266555 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 61, 73 |
| Conread position: | 260-584 |
| Cow position: | chr11:8019842-8020153 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 143, 12 |
| Conread position: | 260-584 |
| Cow position: | chr11:21525339-21525646 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 260-585 |
| Cow position: | chr11:54666487-54666164 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 118 |
| Conread position: | 261-578 |
| Cow position: | chr11:50134271-50133972 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 262-491 |
| Cow position: | chr11:18154052-18153824 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 262-583 |
| Cow position: | chr11:27666296-27665968 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 241 |
| Conread position: | 274-431 |
| Cow position: | chr11:63701282-63701439 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 274-570 |
| Cow position: | chr11:55354478-55354195 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 277-450 |
| Cow position: | chr11:21841902-21841735 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 280-483 |
| Cow position: | chr11:25807532-25807323 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 282-578 |
| Cow position: | chr11:77193820-77193518 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 250 |
| Conread position: | 299-585 |
| Cow position: | chr11:56396387-56396101 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 7, 91 |
| Conread position: | 305-476 |
| Cow position: | chr11:16793700-16793532 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 310-577 |
| Cow position: | chr11:71294747-71295012 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 71, 76 |
| Conread position: | 311-485 |
| Cow position: | chr11:62423843-62423670 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 336-576 |
| Cow position: | chr11:32317391-32317158 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 337-578 |
| Cow position: | chr11:21886591-21886345 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 78, 165 |
| Conread position: | 339-485 |
| Cow position: | chr11:45430315-45430458 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 345-562 |
| Cow position: | chr11:12010934-12011147 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 47, 109 |
| Conread position: | 345-584 |
| Cow position: | chr11:55465122-55464883 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 8, 158 |
| Conread position: | 352-567 |
| Cow position: | chr11:48930445-48930241 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 205, 101 |
| Conread position: | 355-582 |
| Cow position: | chr11:42682688-42682467 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 83, 51 |
| Conread position: | 364-585 |
| Cow position: | chr11:18370900-18371115 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 368-575 |
| Cow position: | chr11:53270531-53270327 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 378-581 |
| Cow position: | chr11:27768805-27768999 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 386-560 |
| Cow position: | chr11:86925319-86925145 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 388-578 |
| Cow position: | chr11:60008214-60008402 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 99, 41 |
| Conread position: | 388-585 |
| Cow position: | chr11:21849999-21849812 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 392-584 |
| Cow position: | chr11:31126257-31126444 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 393-585 |
| Cow position: | chr11:54668832-54669021 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 403-585 |
| Cow position: | chr11:7443380-7443201 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 411-584 |
| Cow position: | chr11:45554584-45554420 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 422-585 |
| Cow position: | chr11:9550445-9550282 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 425-579 |
| Cow position: | chr11:74225944-74226098 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 72, 47 |
| Conread position: | 426-585 |
| Cow position: | chr11:49216818-49216974 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 28 |
Show alignments to all cow chromosomes.