Cow genome map

Conread name: Pig1-92K18

Conread position: 1-420
Cow position: chr3:20471726-20471313 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 287
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 77, 177

Conread position: 1-428
Cow position: chr3:42489675-42489242 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 24

Conread position: 1-429
Cow position: chr3:16115214-16115640 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 291
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 17, 42

Conread position: 1-445
Cow position: chr3:56125378-56125809 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 327
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 71, 46

Conread position: 1-578
Cow position: chr3:54789616-54790165 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 452, 55

Conread position: 1-585
Cow position: chr3:50359097-50358513 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 383

Conread position: 4-420
Cow position: chr3:53588749-53588332 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 162

Conread position: 7-402
Cow position: chr3:66708425-66708033 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 265
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 90, 6

Conread position: 7-420
Cow position: chr3:36204196-36204604 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 271
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 76, 62

Conread position: 7-584
Cow position: chr3:1498518-1499074 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 66

Conread position: 7-585
Cow position: chr3:22867068-22866492 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 375
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 80, 27

Conread position: 10-431
Cow position: chr3:68291217-68291619 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 23

Conread position: 12-585
Cow position: chr3:34953305-34953852 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 66

Conread position: 39-408
Cow position: chr3:77224792-77225158 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 254
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 169

Conread position: 70-581
Cow position: chr3:46135192-46134691 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 37

Conread position: 82-399
Cow position: chr3:74699675-74699352 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 28, 179

Conread position: 82-417
Cow position: chr3:45342865-45343193 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 222
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 128

Conread position: 82-425
Cow position: chr3:42594936-42594596 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 237
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 27, 178

Conread position: 82-581
Cow position: chr3:16622308-16621831 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 66

Conread position: 84-436
Cow position: chr3:55460779-55460428 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 249
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 26, 179

Conread position: 107-585
Cow position: chr3:33468733-33468278 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 92

Conread position: 109-430
Cow position: chr3:3690973-3690662 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 216
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 24, 53

Conread position: 145-562
Cow position: chr3:13478304-13478698 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 29

Conread position: 167-428
Cow position: chr3:56711835-56711580 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 139, 56

Conread position: 183-426
Cow position: chr3:64688383-64688145 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 58

Conread position: 241-536
Cow position: chr3:49635746-49635463 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 81, 11

Conread position: 241-585
Cow position: chr3:26475019-26475352 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 19, 69

Conread position: 242-511
Cow position: chr3:4555797-4555533 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 20, 15

Conread position: 242-585
Cow position: chr3:67927069-67927413 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 240
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 67, 23

Conread position: 250-578
Cow position: chr3:36729549-36729863 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 223
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 65, 33

Conread position: 252-585
Cow position: chr3:22850824-22850494 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 234
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 59, 91

Conread position: 253-451
Cow position: chr3:73936031-73935833 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 80

Conread position: 253-467
Cow position: chr3:52693633-52693420 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 9, 90

Conread position: 253-496
Cow position: chr3:23274797-23274555 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 171
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 11

Conread position: 253-573
Cow position: chr3:55896786-55897100 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 12

Conread position: 253-585
Cow position: chr3:16170150-16169823 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 74

Conread position: 253-585
Cow position: chr3:24261839-24261510 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 13

Conread position: 253-585
Cow position: chr3:48857948-48858266 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 241
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 20, 70

Conread position: 254-572
Cow position: chr3:40269375-40269070 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 254-578
Cow position: chr3:62824618-62824278 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 227
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 255

Conread position: 260-570
Cow position: chr3:40231807-40232096 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 64, 0

Conread position: 260-572
Cow position: chr3:56565316-56565634 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 240

Conread position: 260-584
Cow position: chr3:7136567-7136253 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 120

Conread position: 260-585
Cow position: chr3:31924729-31924416 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 62

Conread position: 260-585
Cow position: chr3:54570508-54570822 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 262-544
Cow position: chr3:8753640-8753932 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 202
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 47, 196

Conread position: 262-553
Cow position: chr3:26531945-26531659 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 262-559
Cow position: chr3:52484491-52484776 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 210, 47

Conread position: 262-562
Cow position: chr3:15557847-15558142 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 165

Conread position: 263-514
Cow position: chr3:54554323-54554571 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 111

Conread position: 263-553
Cow position: chr3:58954180-58954468 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 0

Conread position: 265-487
Cow position: chr3:84153493-84153713 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 217, 151

Conread position: 265-585
Cow position: chr3:79139110-79138799 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 229
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 48, 38

Conread position: 269-495
Cow position: chr3:43967224-43966999 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 124, 31

Conread position: 269-584
Cow position: chr3:74846538-74846211 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 224
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 14, 57

Conread position: 272-489
Cow position: chr3:60854653-60854437 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 39, 95

Conread position: 272-491
Cow position: chr3:8275638-8275856 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 150, 50

Conread position: 274-428
Cow position: chr3:43292157-43292009 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 274-549
Cow position: chr3:43431646-43431368 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 274-578
Cow position: chr3:20713655-20713954 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 22, 57

Conread position: 274-585
Cow position: chr3:73826964-73827271 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 73

Conread position: 277-583
Cow position: chr3:84881536-84881241 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 216
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 10, 54

Conread position: 278-565
Cow position: chr3:41818213-41817936 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 41, 18

Conread position: 280-585
Cow position: chr3:45435057-45435359 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 218

Conread position: 282-561
Cow position: chr3:49841308-49841026 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 213
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 29, 17

Conread position: 289-582
Cow position: chr3:63259840-63260118 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 263, 54

Conread position: 296-531
Cow position: chr3:54909450-54909680 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 200, 68

Conread position: 300-585
Cow position: chr3:35144724-35144998 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 22, 0

Conread position: 306-585
Cow position: chr3:7466826-7466544 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 30, 38

Conread position: 309-584
Cow position: chr3:74761136-74761427 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 104, 13

Conread position: 310-585
Cow position: chr3:64435900-64435627 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 49

Conread position: 311-585
Cow position: chr3:15329495-15329224 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 19

Conread position: 317-585
Cow position: chr3:54051626-54051376 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 318-585
Cow position: chr3:37808166-37807909 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 170, 0

Conread position: 322-578
Cow position: chr3:31812616-31812861 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 168, 21

Conread position: 334-584
Cow position: chr3:41946935-41946691 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 123, 39

Conread position: 337-510
Cow position: chr3:58429327-58429150 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 142, 0

Conread position: 345-581
Cow position: chr3:77065525-77065303 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 61, 0

Conread position: 345-581
Cow position: chr3:77067448-77067226 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 61, 0

Conread position: 352-577
Cow position: chr3:24646160-24646382 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 45, 12

Conread position: 364-584
Cow position: chr3:62560952-62561172 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 118, 130

Conread position: 384-578
Cow position: chr3:41402349-41402544 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 111, 0

Conread position: 384-585
Cow position: chr3:61243984-61244191 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 388-544
Cow position: chr3:3095802-3095651 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 82, 0

Conread position: 391-567
Cow position: chr3:7942189-7942017 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 85, 0

Conread position: 398-585
Cow position: chr3:24783724-24783910 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 56

Conread position: 411-585
Cow position: chr3:45343352-45343526 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 422-578
Cow position: chr3:47117187-47117340 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 123, 71

Conread position: 427-549
Cow position: chr3:45609043-45609165 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 104
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 462-570
Cow position: chr3:72531679-72531786 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 0

Show alignments to all cow chromosomes.