Cow genome map
| Conread name: | Pig1-92K18 |
| Conread position: | 1-339 |
| Cow position: | chr4:62953676-62954010 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 109, 22 |
| Conread position: | 1-405 |
| Cow position: | chr4:25972555-25972953 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 281 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 110, 83 |
| Conread position: | 1-413 |
| Cow position: | chr4:6443421-6443026 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 76 |
| Conread position: | 1-418 |
| Cow position: | chr4:36813046-36813444 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 132, 62 |
| Conread position: | 1-420 |
| Cow position: | chr4:53763459-53763057 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 1-420 |
| Cow position: | chr4:62618162-62618585 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 77, 15 |
| Conread position: | 1-439 |
| Cow position: | chr4:5623548-5623116 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 42, 120 |
| Conread position: | 1-585 |
| Cow position: | chr4:51289372-51289925 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 49 |
| Conread position: | 2-584 |
| Cow position: | chr4:30287988-30288525 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 385 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 102, 18 |
| Conread position: | 4-504 |
| Cow position: | chr4:15283022-15283514 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 337 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 49, 80 |
| Conread position: | 77-405 |
| Cow position: | chr4:9714458-9714773 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 82-374 |
| Cow position: | chr4:27561132-27561419 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 145 |
| Conread position: | 82-427 |
| Cow position: | chr4:45114870-45114533 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 87-374 |
| Cow position: | chr4:24187877-24187589 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 17, 144 |
| Conread position: | 94-585 |
| Cow position: | chr4:15119998-15120463 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 89 |
| Conread position: | 96-357 |
| Cow position: | chr4:59565290-59565548 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 109-378 |
| Cow position: | chr4:52597716-52597452 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 101 |
| Conread position: | 246-582 |
| Cow position: | chr4:18803202-18802869 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 252-486 |
| Cow position: | chr4:34043429-34043197 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 253-430 |
| Cow position: | chr4:26748058-26747883 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 253-451 |
| Cow position: | chr4:14737816-14738004 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 253-489 |
| Cow position: | chr4:54107319-54107082 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 55, 39 |
| Conread position: | 253-562 |
| Cow position: | chr4:19207269-19207561 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 253-585 |
| Cow position: | chr4:21254613-21254275 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 36 |
| Conread position: | 254-546 |
| Cow position: | chr4:61983205-61982920 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 254-578 |
| Cow position: | chr4:13920215-13919902 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 244, 11 |
| Conread position: | 254-585 |
| Cow position: | chr4:27349069-27349389 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 44 |
| Conread position: | 257-567 |
| Cow position: | chr4:58802107-58801795 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 91 |
| Conread position: | 260-581 |
| Cow position: | chr4:45095780-45095464 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 119 |
| Conread position: | 266-570 |
| Cow position: | chr4:19451939-19451648 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 181, 30 |
| Conread position: | 266-578 |
| Cow position: | chr4:22567762-22568066 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 272-560 |
| Cow position: | chr4:63514811-63514528 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 48, 105 |
| Conread position: | 274-533 |
| Cow position: | chr4:13818523-13818280 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 274-570 |
| Cow position: | chr4:36816610-36816891 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 274-585 |
| Cow position: | chr4:44645050-44644744 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 279-540 |
| Cow position: | chr4:23926858-23926605 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 279-561 |
| Cow position: | chr4:4135324-4135609 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 206, 43 |
| Conread position: | 279-585 |
| Cow position: | chr4:20290912-20291214 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 51 |
| Conread position: | 281-584 |
| Cow position: | chr4:33295098-33294809 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 307-585 |
| Cow position: | chr4:35181350-35181620 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 311-585 |
| Cow position: | chr4:3244916-3245187 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 316-533 |
| Cow position: | chr4:20509270-20509061 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 99, 64 |
| Conread position: | 323-441 |
| Cow position: | chr4:8821020-8821144 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 325-585 |
| Cow position: | chr4:5496036-5496290 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 230, 152 |
| Conread position: | 328-575 |
| Cow position: | chr4:20464850-20465089 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 329-578 |
| Cow position: | chr4:11652929-11653171 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 330-509 |
| Cow position: | chr4:66901531-66901708 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 342-561 |
| Cow position: | chr4:21050072-21050285 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 127, 39 |
| Conread position: | 346-562 |
| Cow position: | chr4:48404277-48404064 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 121, 17 |
| Conread position: | 364-585 |
| Cow position: | chr4:6381300-6381080 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 366-570 |
| Cow position: | chr4:65479024-65478816 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 373-584 |
| Cow position: | chr4:44735151-44734952 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 380-563 |
| Cow position: | chr4:44905045-44904861 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 389-570 |
| Cow position: | chr4:29133680-29133506 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 402-584 |
| Cow position: | chr4:34502422-34502251 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 76 |
| Conread position: | 402-585 |
| Cow position: | chr4:52579919-52580098 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 81, 132 |
| Conread position: | 415-585 |
| Cow position: | chr4:21415125-21414959 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 426-584 |
| Cow position: | chr4:24370400-24370243 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.