Cow genome map
| Conread name: | Pig1-92K18 |
| Conread position: | 1-333 |
| Cow position: | chr5:51315159-51314830 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 77, 96 |
| Conread position: | 1-402 |
| Cow position: | chr5:35209783-35209392 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 132, 88 |
| Conread position: | 1-582 |
| Cow position: | chr5:9675905-9675334 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 84 |
| Conread position: | 7-585 |
| Cow position: | chr5:51993570-51994153 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 36 |
| Conread position: | 9-585 |
| Cow position: | chr5:33471543-33471005 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 379 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 105, 39 |
| Conread position: | 77-435 |
| Cow position: | chr5:31913105-31913463 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 114 |
| Conread position: | 83-543 |
| Cow position: | chr5:31784657-31785112 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 86 |
| Conread position: | 95-428 |
| Cow position: | chr5:37425525-37425852 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 14, 135 |
| Conread position: | 95-577 |
| Cow position: | chr5:55985768-55985274 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 251 |
| Conread position: | 97-428 |
| Cow position: | chr5:54111702-54112022 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 13, 101 |
| Conread position: | 97-585 |
| Cow position: | chr5:52816758-52816289 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 100-420 |
| Cow position: | chr5:39442084-39442399 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 103-448 |
| Cow position: | chr5:34420130-34419796 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 11, 118 |
| Conread position: | 132-584 |
| Cow position: | chr5:35583752-35584187 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 300 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 42, 32 |
| Conread position: | 135-421 |
| Cow position: | chr5:34167786-34168065 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 174, 64 |
| Conread position: | 231-445 |
| Cow position: | chr5:38911268-38911483 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 235-578 |
| Cow position: | chr5:44491518-44491861 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 13 |
| Conread position: | 241-585 |
| Cow position: | chr5:32336150-32335809 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 18 |
| Conread position: | 253-486 |
| Cow position: | chr5:60968650-60968886 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 66, 12 |
| Conread position: | 253-553 |
| Cow position: | chr5:1130585-1130293 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 72 |
| Conread position: | 253-585 |
| Cow position: | chr5:49635351-49635034 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 257-579 |
| Cow position: | chr5:51360871-51361186 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 66 |
| Conread position: | 260-489 |
| Cow position: | chr5:53599824-53599600 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 56, 161 |
| Conread position: | 262-585 |
| Cow position: | chr5:38970623-38970936 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 191 |
| Conread position: | 266-585 |
| Cow position: | chr5:55195362-55195671 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 58, 45 |
| Conread position: | 267-486 |
| Cow position: | chr5:35708442-35708217 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 267-585 |
| Cow position: | chr5:70608932-70609243 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 269-575 |
| Cow position: | chr5:63818202-63817900 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 269-585 |
| Cow position: | chr5:42045139-42045447 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 274-570 |
| Cow position: | chr5:21937475-21937197 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 219, 160 |
| Conread position: | 274-584 |
| Cow position: | chr5:6567834-6568140 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 58, 40 |
| Conread position: | 275-565 |
| Cow position: | chr5:31722823-31722525 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 275-584 |
| Cow position: | chr5:50770401-50770102 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 45, 66 |
| Conread position: | 277-584 |
| Cow position: | chr5:18883132-18882847 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 278-575 |
| Cow position: | chr5:30336123-30335840 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 94 |
| Conread position: | 280-491 |
| Cow position: | chr5:51953118-51953331 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 318-578 |
| Cow position: | chr5:8985739-8985485 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 323-571 |
| Cow position: | chr5:9712808-9712557 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 88, 22 |
| Conread position: | 323-582 |
| Cow position: | chr5:18002267-18002016 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 326-584 |
| Cow position: | chr5:40888837-40888584 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 337-578 |
| Cow position: | chr5:56097108-56096872 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 337-585 |
| Cow position: | chr5:7659638-7659398 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 78, 152 |
| Conread position: | 338-585 |
| Cow position: | chr5:70768559-70768804 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 339-578 |
| Cow position: | chr5:21517144-21516903 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 43, 106 |
| Conread position: | 339-583 |
| Cow position: | chr5:18582816-18583057 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 344-533 |
| Cow position: | chr5:35990444-35990261 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 345-583 |
| Cow position: | chr5:18674572-18674802 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 119, 108 |
| Conread position: | 354-473 |
| Cow position: | chr5:22558961-22559080 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 371-579 |
| Cow position: | chr5:8232463-8232263 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 186, 102 |
| Conread position: | 402-572 |
| Cow position: | chr5:23414188-23414026 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 407-585 |
| Cow position: | chr5:17829535-17829355 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 411-584 |
| Cow position: | chr5:14215875-14215705 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 417-548 |
| Cow position: | chr5:59622913-59622781 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 419-585 |
| Cow position: | chr5:57783867-57784033 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 430-578 |
| Cow position: | chr5:11975023-11974876 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 448-585 |
| Cow position: | chr5:39327203-39327070 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.