Cow genome map
| Conread name: | Pig1-92K18 |
| Conread position: | 4-422 |
| Cow position: | chr6:45617734-45617316 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 74 |
| Conread position: | 7-329 |
| Cow position: | chr6:619257-619579 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 67, 230 |
| Conread position: | 17-420 |
| Cow position: | chr6:57119208-57118826 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 90, 51 |
| Conread position: | 70-428 |
| Cow position: | chr6:29084455-29084083 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 8, 89 |
| Conread position: | 80-585 |
| Cow position: | chr6:49821305-49821798 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 82-374 |
| Cow position: | chr6:9026300-9026593 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 28, 145 |
| Conread position: | 82-428 |
| Cow position: | chr6:55936193-55935854 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 28, 120 |
| Conread position: | 84-432 |
| Cow position: | chr6:30315272-30314922 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 149 |
| Conread position: | 84-584 |
| Cow position: | chr6:1889296-1888801 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 86-413 |
| Cow position: | chr6:56376560-56376240 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 95-420 |
| Cow position: | chr6:15782729-15782399 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 96-426 |
| Cow position: | chr6:13592507-13592830 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 90 |
| Conread position: | 103-475 |
| Cow position: | chr6:58750123-58749778 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 30, 121 |
| Conread position: | 103-486 |
| Cow position: | chr6:55140852-55140487 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 133-428 |
| Cow position: | chr6:50822072-50822353 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 155-428 |
| Cow position: | chr6:31526952-31526693 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 151, 84 |
| Conread position: | 239-568 |
| Cow position: | chr6:68112563-68112243 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 241-585 |
| Cow position: | chr6:1562062-1562383 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 242-559 |
| Cow position: | chr6:46250759-46250451 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 59 |
| Conread position: | 246-534 |
| Cow position: | chr6:39798753-39798466 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 55 |
| Conread position: | 246-585 |
| Cow position: | chr6:46627236-46627570 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 26 |
| Conread position: | 252-451 |
| Cow position: | chr6:50625530-50625737 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 253-429 |
| Cow position: | chr6:38899826-38899648 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 59 |
| Conread position: | 253-483 |
| Cow position: | chr6:47847766-47847527 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 48, 166 |
| Conread position: | 253-570 |
| Cow position: | chr6:36918252-36917949 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 7, 77 |
| Conread position: | 253-572 |
| Cow position: | chr6:57777104-57776793 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 7 |
| Conread position: | 254-553 |
| Cow position: | chr6:40033336-40033649 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 19, 98 |
| Conread position: | 254-571 |
| Cow position: | chr6:58949830-58949523 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 257-585 |
| Cow position: | chr6:40157217-40156914 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 63, 37 |
| Conread position: | 260-561 |
| Cow position: | chr6:12740533-12740824 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 260-567 |
| Cow position: | chr6:55450820-55450516 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 127, 75 |
| Conread position: | 260-584 |
| Cow position: | chr6:37644488-37644812 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 41, 172 |
| Conread position: | 262-585 |
| Cow position: | chr6:12516085-12516390 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 263-483 |
| Cow position: | chr6:52188895-52188683 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 27 |
| Conread position: | 270-561 |
| Cow position: | chr6:31952734-31952450 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 214, 39 |
| Conread position: | 276-570 |
| Cow position: | chr6:27222133-27222426 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 70 |
| Conread position: | 276-585 |
| Cow position: | chr6:11035626-11035309 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 166, 109 |
| Conread position: | 282-531 |
| Cow position: | chr6:68318751-68318508 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 288-585 |
| Cow position: | chr6:30890970-30890672 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 301-491 |
| Cow position: | chr6:31687904-31687715 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 301-491 |
| Cow position: | chr6:44377555-44377742 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 181, 29 |
| Conread position: | 307-584 |
| Cow position: | chr6:4728943-4728670 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 166 |
| Conread position: | 311-549 |
| Cow position: | chr6:22804393-22804155 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 312-578 |
| Cow position: | chr6:30499117-30499381 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 182 |
| Conread position: | 314-578 |
| Cow position: | chr6:54564918-54565173 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 329-584 |
| Cow position: | chr6:45977142-45976873 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 335-582 |
| Cow position: | chr6:15749581-15749341 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 338-571 |
| Cow position: | chr6:58881345-58881576 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 342-518 |
| Cow position: | chr6:28078722-28078547 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 112 |
| Conread position: | 342-578 |
| Cow position: | chr6:30946022-30945793 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 345-585 |
| Cow position: | chr6:12511591-12511828 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 28 |
| Conread position: | 347-572 |
| Cow position: | chr6:47987856-47988073 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 155, 33 |
| Conread position: | 352-576 |
| Cow position: | chr6:4306437-4306657 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 190, 58 |
| Conread position: | 364-585 |
| Cow position: | chr6:66320516-66320735 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 375-573 |
| Cow position: | chr6:17446106-17446297 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 388-563 |
| Cow position: | chr6:57046730-57046555 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 392-572 |
| Cow position: | chr6:5516956-5516778 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 401-565 |
| Cow position: | chr6:37734366-37734528 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 405-578 |
| Cow position: | chr6:52121746-52121912 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 97, 67 |
| Conread position: | 406-562 |
| Cow position: | chr6:42755539-42755695 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 47 |
| Conread position: | 407-585 |
| Cow position: | chr6:47134185-47134363 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 80, 62 |
| Conread position: | 407-585 |
| Cow position: | chr6:47156391-47156569 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 410-537 |
| Cow position: | chr6:23767659-23767532 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 81 |
| Conread position: | 411-584 |
| Cow position: | chr6:35406938-35406768 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 415-585 |
| Cow position: | chr6:31207182-31207018 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 416-584 |
| Cow position: | chr6:62789419-62789587 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 71, 139 |
| Conread position: | 416-585 |
| Cow position: | chr6:493505-493671 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 427-581 |
| Cow position: | chr6:36273189-36273342 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 430-585 |
| Cow position: | chr6:8565299-8565450 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 23 |
| Conread position: | 441-585 |
| Cow position: | chr6:56367938-56367794 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 454-575 |
| Cow position: | chr6:50690588-50690707 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 461-585 |
| Cow position: | chr6:9470264-9470387 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 463-578 |
| Cow position: | chr6:36882080-36881966 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
Show alignments to all cow chromosomes.