Cow genome map
| Conread name: | Pig1-92K18 |
| Conread position: | 1-321 |
| Cow position: | chr9:40415361-40415050 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 32 |
| Conread position: | 1-379 |
| Cow position: | chr9:3932331-3931955 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 92, 69 |
| Conread position: | 1-428 |
| Cow position: | chr9:1280720-1281153 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 215 |
| Conread position: | 1-428 |
| Cow position: | chr9:2858902-2858481 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 4-402 |
| Cow position: | chr9:29808824-29808426 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 102, 72 |
| Conread position: | 7-428 |
| Cow position: | chr9:62131822-62132238 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 281 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 13-420 |
| Cow position: | chr9:214109-214507 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 65, 233 |
| Conread position: | 47-402 |
| Cow position: | chr9:54924953-54924590 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 31, 194 |
| Conread position: | 66-420 |
| Cow position: | chr9:16745975-16745626 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 69-403 |
| Cow position: | chr9:14507193-14506877 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 9, 58 |
| Conread position: | 82-420 |
| Cow position: | chr9:5029801-5029463 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 29, 155 |
| Conread position: | 84-457 |
| Cow position: | chr9:18823009-18823371 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 103-320 |
| Cow position: | chr9:36602157-36602368 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 106-420 |
| Cow position: | chr9:44553006-44552700 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 27, 152 |
| Conread position: | 107-410 |
| Cow position: | chr9:60459434-60459147 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 130-472 |
| Cow position: | chr9:54739620-54739931 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 145-411 |
| Cow position: | chr9:32816915-32817179 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 165, 96 |
| Conread position: | 177-420 |
| Cow position: | chr9:42037839-42037606 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 241-552 |
| Cow position: | chr9:22398307-22398004 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 62 |
| Conread position: | 246-585 |
| Cow position: | chr9:15965067-15965392 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 275, 14 |
| Conread position: | 250-585 |
| Cow position: | chr9:16252891-16253209 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 252-578 |
| Cow position: | chr9:31968744-31969079 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 252-585 |
| Cow position: | chr9:4677360-4677694 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 31 |
| Conread position: | 253-486 |
| Cow position: | chr9:52725530-52725760 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 254-462 |
| Cow position: | chr9:15483198-15483394 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 259-491 |
| Cow position: | chr9:18570565-18570797 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-578 |
| Cow position: | chr9:10355424-10355736 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 116 |
| Conread position: | 259-585 |
| Cow position: | chr9:32688676-32688993 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 64 |
| Conread position: | 260-533 |
| Cow position: | chr9:40859875-40859627 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-570 |
| Cow position: | chr9:55262435-55262740 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 8 |
| Conread position: | 260-578 |
| Cow position: | chr9:35224765-35224452 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 113 |
| Conread position: | 265-585 |
| Cow position: | chr9:41904245-41903940 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 266-489 |
| Cow position: | chr9:54906498-54906278 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 269-431 |
| Cow position: | chr9:20320717-20320880 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 269-573 |
| Cow position: | chr9:39647124-39646820 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 274-457 |
| Cow position: | chr9:42214848-42215031 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 274-584 |
| Cow position: | chr9:26353105-26353415 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 275-584 |
| Cow position: | chr9:15936959-15936659 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 208, 123 |
| Conread position: | 279-402 |
| Cow position: | chr9:9368823-9368945 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 282-479 |
| Cow position: | chr9:14739443-14739252 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 120, 23 |
| Conread position: | 282-479 |
| Cow position: | chr9:14743341-14743531 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 120, 23 |
| Conread position: | 283-585 |
| Cow position: | chr9:10310862-10311164 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 58 |
| Conread position: | 299-483 |
| Cow position: | chr9:46657862-46658046 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 302-496 |
| Cow position: | chr9:26862673-26862482 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 302-496 |
| Cow position: | chr9:35527486-35527299 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 318-585 |
| Cow position: | chr9:12890258-12889999 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 35, 57 |
| Conread position: | 322-514 |
| Cow position: | chr9:55355798-55355602 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 327-450 |
| Cow position: | chr9:28248515-28248637 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 335-527 |
| Cow position: | chr9:40098802-40098621 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 337-562 |
| Cow position: | chr9:1930100-1929878 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 340-553 |
| Cow position: | chr9:56411387-56411605 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 357-572 |
| Cow position: | chr9:39236449-39236658 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 364-585 |
| Cow position: | chr9:18577305-18577098 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 366-585 |
| Cow position: | chr9:15962233-15962456 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 126, 140 |
| Conread position: | 386-585 |
| Cow position: | chr9:9784400-9784598 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 111, 37 |
| Conread position: | 387-585 |
| Cow position: | chr9:3204153-3203955 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-576 |
| Cow position: | chr9:58655057-58654875 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 393-578 |
| Cow position: | chr9:53532101-53532283 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 123, 95 |
| Conread position: | 404-553 |
| Cow position: | chr9:32728564-32728711 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 415-562 |
| Cow position: | chr9:54717304-54717453 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 426-583 |
| Cow position: | chr9:51159698-51159542 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 32 |
Show alignments to all cow chromosomes.