Cow genome map
| Conread name: | Pig1-92K18 |
| Conread position: | 1-413 |
| Cow position: | chrX:630606-630214 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 170, 46 |
| Conread position: | 1-413 |
| Cow position: | chrX:33803325-33802912 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 287 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 72, 23 |
| Conread position: | 1-420 |
| Cow position: | chrX:25337867-25338290 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 263 |
| Conread position: | 1-428 |
| Cow position: | chrX:11981811-11982248 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 301 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 77, 210 |
| Conread position: | 7-552 |
| Cow position: | chrX:18293632-18294151 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 46 |
| Conread position: | 7-585 |
| Cow position: | chrX:25848611-25849168 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 224 |
| Conread position: | 9-420 |
| Cow position: | chrX:3154552-3154140 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 8, 254 |
| Conread position: | 9-420 |
| Cow position: | chrX:28111193-28111612 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 292 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 61, 219 |
| Conread position: | 77-295 |
| Cow position: | chrX:28856742-28856951 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 82-402 |
| Cow position: | chrX:27176550-27176228 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 130 |
| Conread position: | 82-420 |
| Cow position: | chrX:24132381-24132048 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 83-420 |
| Cow position: | chrX:21664952-21664618 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 84-427 |
| Cow position: | chrX:35925739-35926066 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 84 |
| Conread position: | 84-487 |
| Cow position: | chrX:37138202-37137817 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 150 |
| Conread position: | 91-420 |
| Cow position: | chrX:25571213-25570891 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 22, 125 |
| Conread position: | 92-487 |
| Cow position: | chrX:2701032-2700646 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 14, 154 |
| Conread position: | 93-376 |
| Cow position: | chrX:34034978-34035261 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 182 |
| Conread position: | 107-428 |
| Cow position: | chrX:13245389-13245708 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 107-585 |
| Cow position: | chrX:31385990-31386439 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 25 |
| Conread position: | 108-399 |
| Cow position: | chrX:2147133-2147426 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 141-374 |
| Cow position: | chrX:23666955-23667182 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 162, 82 |
| Conread position: | 145-428 |
| Cow position: | chrX:23254377-23254094 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 34, 91 |
| Conread position: | 152-324 |
| Cow position: | chrX:1501209-1501034 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 70, 81 |
| Conread position: | 183-570 |
| Cow position: | chrX:21206269-21205907 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 275 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 205, 34 |
| Conread position: | 240-577 |
| Cow position: | chrX:27024057-27024377 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 241-442 |
| Cow position: | chrX:25281554-25281356 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 174, 69 |
| Conread position: | 241-490 |
| Cow position: | chrX:23907743-23907496 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 246-446 |
| Cow position: | chrX:18248218-18248417 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 11 |
| Conread position: | 252-583 |
| Cow position: | chrX:4629773-4629436 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 56, 236 |
| Conread position: | 253-519 |
| Cow position: | chrX:38140123-38139868 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 65, 21 |
| Conread position: | 253-537 |
| Cow position: | chrX:13852389-13852670 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 253-551 |
| Cow position: | chrX:4554319-4554602 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 15, 71 |
| Conread position: | 253-578 |
| Cow position: | chrX:17200641-17200952 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 253-584 |
| Cow position: | chrX:10462548-10462875 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 254-578 |
| Cow position: | chrX:16933386-16933706 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 259-469 |
| Cow position: | chrX:10311971-10312183 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 259-494 |
| Cow position: | chrX:13360446-13360684 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 50, 123 |
| Conread position: | 260-486 |
| Cow position: | chrX:19018013-19017783 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 49, 73 |
| Conread position: | 260-550 |
| Cow position: | chrX:46372820-46372534 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 220, 47 |
| Conread position: | 260-584 |
| Cow position: | chrX:20715996-20715678 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 24 |
| Conread position: | 261-583 |
| Cow position: | chrX:34865925-34865602 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 124 |
| Conread position: | 262-491 |
| Cow position: | chrX:21816504-21816732 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 262-585 |
| Cow position: | chrX:11675309-11675643 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 225, 68 |
| Conread position: | 265-584 |
| Cow position: | chrX:4794251-4793942 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 265-585 |
| Cow position: | chrX:19210467-19210159 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 119, 99 |
| Conread position: | 268-576 |
| Cow position: | chrX:25824355-25824053 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 149, 43 |
| Conread position: | 271-514 |
| Cow position: | chrX:37067269-37067515 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 272-582 |
| Cow position: | chrX:5648232-5647919 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 34, 168 |
| Conread position: | 273-585 |
| Cow position: | chrX:6380763-6381063 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 208, 43 |
| Conread position: | 274-486 |
| Cow position: | chrX:2186510-2186712 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 278-584 |
| Cow position: | chrX:37139557-37139857 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 212, 51 |
| Conread position: | 278-585 |
| Cow position: | chrX:4424915-4425220 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 281-584 |
| Cow position: | chrX:21989771-21990059 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 287-495 |
| Cow position: | chrX:20504969-20505175 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 291-570 |
| Cow position: | chrX:32049231-32049508 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 19, 164 |
| Conread position: | 301-495 |
| Cow position: | chrX:4631098-4630906 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 189, 28 |
| Conread position: | 314-513 |
| Cow position: | chrX:29573554-29573744 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 334-571 |
| Cow position: | chrX:263817-263581 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 336-487 |
| Cow position: | chrX:13403435-13403284 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 336-565 |
| Cow position: | chrX:32349938-32349714 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-553 |
| Cow position: | chrX:40733918-40733705 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 161, 107 |
| Conread position: | 343-505 |
| Cow position: | chrX:32773616-32773456 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 351-585 |
| Cow position: | chrX:25707812-25707588 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 364-585 |
| Cow position: | chrX:17265066-17264855 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 131, 61 |
| Conread position: | 392-585 |
| Cow position: | chrX:34134234-34134419 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 403-578 |
| Cow position: | chrX:15844161-15843985 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 418-585 |
| Cow position: | chrX:19976920-19976751 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 419-585 |
| Cow position: | chrX:38693636-38693800 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 69, 34 |
| Conread position: | 423-571 |
| Cow position: | chrX:19093952-19093806 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 30 |
Show alignments to all cow chromosomes.