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Cow genome map

           
Conread name:
           
Pig1-94N05
        

               
Conread position:
               
180-390
               

               
Cow position:
               
chr3:16868054-16867845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
37, 46
               

               
Conread position:
               
204-494
               

               
Cow position:
               
chr3:68880923-68881200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
16, 112
               

               
Conread position:
               
210-494
               

               
Cow position:
               
chr3:26982262-26981978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
24, 54
               

               
Conread position:
               
212-309
               

               
Cow position:
               
chr3:10347905-10347810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
214-414
               

               
Cow position:
               
chr3:23037309-23037511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
214-414
               

               
Cow position:
               
chr3:35802740-35802943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
214-442
               

               
Cow position:
               
chr3:15973767-15973535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
105, 134
               

               
Conread position:
               
214-442
               

               
Cow position:
               
chr3:76713116-76713351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
215-397
               

               
Cow position:
               
chr3:3011343-3011161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
216-369
               

               
Cow position:
               
chr3:70632344-70632188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 154
               

               
Conread position:
               
216-417
               

               
Cow position:
               
chr3:78071597-78071796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
120, 102
               

               
Conread position:
               
216-494
               

               
Cow position:
               
chr3:43233703-43233420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
25, 112
               

               
Conread position:
               
217-444
               

               
Cow position:
               
chr3:1011686-1011453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
95, 131
               

               
Conread position:
               
217-468
               

               
Cow position:
               
chr3:13380081-13380330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
31, 100
               

               
Conread position:
               
218-385
               

               
Cow position:
               
chr3:53249678-53249515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
218-442
               

               
Cow position:
               
chr3:59474311-59474091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
201, 9
               

               
Conread position:
               
219-377
               

               
Cow position:
               
chr3:10695809-10695971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
219-387
               

               
Cow position:
               
chr3:75908101-75907936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
219-494
               

               
Cow position:
               
chr3:68707830-68708092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
224, 95
               

               
Conread position:
               
219-494
               

               
Cow position:
               
chr3:77365099-77365386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
220-379
               

               
Cow position:
               
chr3:27212508-27212354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
220-407
               

               
Cow position:
               
chr3:68289874-68289681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
220-492
               

               
Cow position:
               
chr3:83441704-83441969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 5
               

               
Conread position:
               
220-494
               

               
Cow position:
               
chr3:75480188-75479912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
87, 21
               

               
Conread position:
               
221-429
               

               
Cow position:
               
chr3:76415692-76415921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
16, 139
               

               
Conread position:
               
221-494
               

               
Cow position:
               
chr3:8061312-8061039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
6, 52
               

               
Conread position:
               
221-494
               

               
Cow position:
               
chr3:11063550-11063288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
222-398
               

               
Cow position:
               
chr3:64909903-64910082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
14, 95
               

               
Conread position:
               
222-414
               

               
Cow position:
               
chr3:2016620-2016433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
120, 25
               

               
Conread position:
               
222-417
               

               
Cow position:
               
chr3:4271553-4271367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
222-417
               

               
Cow position:
               
chr3:37641514-37641320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
178, 19
               

               
Conread position:
               
222-417
               

               
Cow position:
               
chr3:62186348-62186146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
222-424
               

               
Cow position:
               
chr3:79339387-79339592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 100
               

               
Conread position:
               
222-444
               

               
Cow position:
               
chr3:59933569-59933338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
222-453
               

               
Cow position:
               
chr3:5305991-5305755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
90, 19
               

               
Conread position:
               
222-492
               

               
Cow position:
               
chr3:59630317-59630588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
222-494
               

               
Cow position:
               
chr3:3883630-3883907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
222-494
               

               
Cow position:
               
chr3:8349380-8349644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
222-494
               

               
Cow position:
               
chr3:22232478-22232740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
223-320
               

               
Cow position:
               
chr3:53508829-53508733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
223-351
               

               
Cow position:
               
chr3:2434549-2434677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
223-390
               

               
Cow position:
               
chr3:44218956-44218787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
89, 124
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr3:17039798-17039617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 35
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr3:21694415-21694229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
89, 67
               

               
Conread position:
               
223-411
               

               
Cow position:
               
chr3:77654108-77653929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
223-414
               

               
Cow position:
               
chr3:423559-423366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 124
               

               
Conread position:
               
223-417
               

               
Cow position:
               
chr3:13882330-13882526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
87, 142
               

               
Conread position:
               
223-417
               

               
Cow position:
               
chr3:59947854-59947660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
87, 17
               

               
Conread position:
               
223-430
               

               
Cow position:
               
chr3:28323397-28323198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
188, 15
               

               
Conread position:
               
223-442
               

               
Cow position:
               
chr3:5703365-5703147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
13, 137
               

               
Conread position:
               
223-443
               

               
Cow position:
               
chr3:28896834-28897051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
223-468
               

               
Cow position:
               
chr3:55819936-55819699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
196, 18
               

               
Conread position:
               
223-469
               

               
Cow position:
               
chr3:45211492-45211245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
93, 224
               

               
Conread position:
               
223-488
               

               
Cow position:
               
chr3:59299766-59299493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
13, 96
               

               
Conread position:
               
223-494
               

               
Cow position:
               
chr3:1037216-1036938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
99, 129
               

               
Conread position:
               
223-494
               

               
Cow position:
               
chr3:69785431-69785715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
223-494
               

               
Cow position:
               
chr3:71238339-71238068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
224-407
               

               
Cow position:
               
chr3:80541409-80541223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 114
               

               
Conread position:
               
224-442
               

               
Cow position:
               
chr3:73467812-73467600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
128, 17
               

               
Conread position:
               
224-490
               

               
Cow position:
               
chr3:57274245-57273981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 54
               

               
Conread position:
               
225-345
               

               
Cow position:
               
chr3:35168117-35168230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
225-387
               

               
Cow position:
               
chr3:61171173-61171344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
225-441
               

               
Cow position:
               
chr3:73589581-73589801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
225-441
               

               
Cow position:
               
chr3:79272390-79272603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
132, 92
               

               
Conread position:
               
225-442
               

               
Cow position:
               
chr3:25904854-25905080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
116, 16
               

               
Conread position:
               
225-442
               

               
Cow position:
               
chr3:75173414-75173611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
194, 42
               

               
Conread position:
               
225-442
               

               
Cow position:
               
chr3:81234574-81234358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
194, 93
               

               
Conread position:
               
225-493
               

               
Cow position:
               
chr3:78077377-78077102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
225-494
               

               
Cow position:
               
chr3:1785038-1785332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
225-494
               

               
Cow position:
               
chr3:13353550-13353273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
86, 177
               

               
Conread position:
               
225-494
               

               
Cow position:
               
chr3:30940992-30940724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
225-494
               

               
Cow position:
               
chr3:31804583-31804850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
8, 82
               

               
Conread position:
               
225-494
               

               
Cow position:
               
chr3:72474108-72473824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
82, 126
               

               
Conread position:
               
225-496
               

               
Cow position:
               
chr3:17331904-17331636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
194, 16
               

               
Conread position:
               
226-382
               

               
Cow position:
               
chr3:20888477-20888633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
226-406
               

               
Cow position:
               
chr3:39812244-39812053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
226-414
               

               
Cow position:
               
chr3:66120899-66120704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
226-494
               

               
Cow position:
               
chr3:3985501-3985239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
217, 76
               

               
Conread position:
               
226-494
               

               
Cow position:
               
chr3:31349924-31350194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
193, 22
               

               
Conread position:
               
226-494
               

               
Cow position:
               
chr3:58764902-58765167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
193, 15
               

               
Conread position:
               
227-317
               

               
Cow position:
               
chr3:24584962-24585056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
227-337
               

               
Cow position:
               
chr3:47735406-47735299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 82
               

               
Conread position:
               
227-364
               

               
Cow position:
               
chr3:43091274-43091139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
227-384
               

               
Cow position:
               
chr3:58497844-58497685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
227-390
               

               
Cow position:
               
chr3:58562885-58562715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 98
               

               
Conread position:
               
227-391
               

               
Cow position:
               
chr3:29807916-29807762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
227-392
               

               
Cow position:
               
chr3:32248198-32248031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
85, 120
               

               
Conread position:
               
227-399
               

               
Cow position:
               
chr3:10844198-10844364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
227-399
               

               
Cow position:
               
chr3:57641987-57641813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
66, 100
               

               
Conread position:
               
227-399
               

               
Cow position:
               
chr3:57790797-57790626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 85
               

               
Conread position:
               
227-406
               

               
Cow position:
               
chr3:68094338-68094150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
227-406
               

               
Cow position:
               
chr3:76024687-76024515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
227-407
               

               
Cow position:
               
chr3:21959849-21959664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
87, 61
               

               
Conread position:
               
227-413
               

               
Cow position:
               
chr3:79207531-79207703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
25, 76
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chr3:20158258-20158066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chr3:28883976-28884163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chr3:76300958-76300768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr3:9025896-9026091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
18, 158
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr3:15859198-15859384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 87
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr3:54903751-54903559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 120
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr3:59885715-59885535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 74
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr3:80958325-80958516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
88, 162
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr3:81666981-81666794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 43
               

               
Conread position:
               
227-422
               

               
Cow position:
               
chr3:26337832-26338031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 137
               

               
Conread position:
               
227-424
               

               
Cow position:
               
chr3:56678162-56678361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
227-427
               

               
Cow position:
               
chr3:38331427-38331625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
75, 20
               

               
Conread position:
               
227-431
               

               
Cow position:
               
chr3:25290026-25289825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
227-431
               

               
Cow position:
               
chr3:51150314-51150108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
227-431
               

               
Cow position:
               
chr3:73701680-73701484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
161, 13
               

               
Conread position:
               
227-438
               

               
Cow position:
               
chr3:12669323-12669109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
78, 150
               

               
Conread position:
               
227-440
               

               
Cow position:
               
chr3:75050438-75050646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
227-441
               

               
Cow position:
               
chr3:22924196-22924405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
192, 87
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr3:5040119-5040338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 178
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr3:11229187-11229396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
192, 36
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr3:15051768-15051979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
149, 106
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr3:48900146-48900363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
95, 195
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr3:63180048-63179826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 148
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr3:68004522-68004733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 41
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr3:69650714-69650920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
192, 41
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr3:71423384-71423582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr3:71496945-71497169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr3:77276280-77276489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 90
               

               
Conread position:
               
227-444
               

               
Cow position:
               
chr3:66631159-66631385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
86, 51
               

               
Conread position:
               
227-449
               

               
Cow position:
               
chr3:8813920-8814151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
76, 26
               

               
Conread position:
               
227-452
               

               
Cow position:
               
chr3:44207693-44207926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
227-479
               

               
Cow position:
               
chr3:48810454-48810714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
227-480
               

               
Cow position:
               
chr3:45700986-45700732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
189, 89
               

               
Conread position:
               
227-486
               

               
Cow position:
               
chr3:76270073-76269816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 95
               

               
Conread position:
               
227-490
               

               
Cow position:
               
chr3:51608999-51609271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 99
               

               
Conread position:
               
227-490
               

               
Cow position:
               
chr3:65969358-65969077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
227-492
               

               
Cow position:
               
chr3:11253979-11254245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
8, 227
               

               
Conread position:
               
227-492
               

               
Cow position:
               
chr3:51403080-51402822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
44, 86
               

               
Conread position:
               
227-492
               

               
Cow position:
               
chr3:58134500-58134774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
88, 98
               

               
Conread position:
               
227-492
               

               
Cow position:
               
chr3:59605025-59604758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 14
               

               
Conread position:
               
227-493
               

               
Cow position:
               
chr3:3656699-3656426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
227-493
               

               
Cow position:
               
chr3:54946305-54946041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
192, 35
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr3:525510-525256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
195, 41
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr3:17058363-17058629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
192, 91
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr3:21014770-21015049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
16, 45
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr3:22221510-22221231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
173, 91
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr3:23168883-23169155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr3:23471279-23471555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
189, 74
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr3:26970995-26970739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
192, 35
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr3:53738998-53739274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
58, 95
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr3:58527561-58527305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
216, 87
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr3:62046855-62046572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr3:71247197-71246936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
156, 37
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr3:77188627-77188348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
14, 122
               

               
Conread position:
               
227-496
               

               
Cow position:
               
chr3:19900840-19900570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 132
               

               
Conread position:
               
228-351
               

               
Cow position:
               
chr3:3887459-3887579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
228-351
               

               
Cow position:
               
chr3:75711693-75711565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
228-387
               

               
Cow position:
               
chr3:31896771-31896932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
228-395
               

               
Cow position:
               
chr3:24922926-24922764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
228-395
               

               
Cow position:
               
chr3:52450604-52450442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
228-399
               

               
Cow position:
               
chr3:35079322-35079495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
228-407
               

               
Cow position:
               
chr3:63069178-63069361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
228-410
               

               
Cow position:
               
chr3:3401725-3401549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
228-410
               

               
Cow position:
               
chr3:67519993-67520164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
228-430
               

               
Cow position:
               
chr3:77171501-77171296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 119
               

               
Conread position:
               
228-442
               

               
Cow position:
               
chr3:65237208-65236993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
228-443
               

               
Cow position:
               
chr3:25477975-25477774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
228-494
               

               
Cow position:
               
chr3:5707027-5707303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 119
               

               
Conread position:
               
229-385
               

               
Cow position:
               
chr3:73410465-73410313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
80, 57
               

               
Conread position:
               
229-440
               

               
Cow position:
               
chr3:56704133-56704350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
229-442
               

               
Cow position:
               
chr3:52457091-52456887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 92
               

               
Conread position:
               
229-492
               

               
Cow position:
               
chr3:57754293-57754565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 116
               

               
Conread position:
               
229-494
               

               
Cow position:
               
chr3:16752072-16752348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
90, 174
               

               
Conread position:
               
229-494
               

               
Cow position:
               
chr3:31361605-31361329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 74
               

               
Conread position:
               
229-494
               

               
Cow position:
               
chr3:36418305-36418555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
230-351
               

               
Cow position:
               
chr3:44415390-44415513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
230-367
               

               
Cow position:
               
chr3:77650763-77650628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
129, 78
               

               
Conread position:
               
230-379
               

               
Cow position:
               
chr3:15057461-15057609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 126
               

               
Conread position:
               
230-382
               

               
Cow position:
               
chr3:78115409-78115563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
230-389
               

               
Cow position:
               
chr3:77227983-77227830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 45
               

               
Conread position:
               
230-390
               

               
Cow position:
               
chr3:74127319-74127487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 134
               

               
Conread position:
               
230-391
               

               
Cow position:
               
chr3:22903577-22903732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
230-392
               

               
Cow position:
               
chr3:48537547-48537382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 118
               

               
Conread position:
               
230-396
               

               
Cow position:
               
chr3:8526198-8526349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
230-396
               

               
Cow position:
               
chr3:56023204-56023048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 103
               

               
Conread position:
               
230-398
               

               
Cow position:
               
chr3:14211805-14211969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
230-399
               

               
Cow position:
               
chr3:11607998-11607835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
230-399
               

               
Cow position:
               
chr3:40957947-40958114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
230-399
               

               
Cow position:
               
chr3:44782519-44782352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
230-399
               

               
Cow position:
               
chr3:59699470-59699638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
82, 111
               

               
Conread position:
               
230-411
               

               
Cow position:
               
chr3:32376993-32376814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
230-411
               

               
Cow position:
               
chr3:60186334-60186146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
22, 161
               

               
Conread position:
               
230-416
               

               
Cow position:
               
chr3:6728140-6728334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 134
               

               
Conread position:
               
230-416
               

               
Cow position:
               
chr3:73943691-73943878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 59
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:13240892-13241081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 186
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:14770705-14770887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:14801925-14801739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:15795403-15795214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 117
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:32317648-32317836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 95
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:36411902-36412093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:37851677-37851491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:40212854-40213039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
111, 88
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:41366519-41366715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:44960126-44959937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
88, 118
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:45822838-45823027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 93
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:47198945-47199132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:49741114-49741306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 170
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:54557847-54557669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:55318717-55318902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:55712612-55712435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:59317881-59317697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
96, 76
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:65308272-65308459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
78, 129
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:79271528-79271716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
77, 67
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:79884299-79884491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
74, 136
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:81616269-81616458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:83705354-83705542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 114
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr3:83770915-83770726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
230-418
               

               
Cow position:
               
chr3:17531551-17531744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
230-420
               

               
Cow position:
               
chr3:46259893-46259703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
73, 103
               

               
Conread position:
               
230-420
               

               
Cow position:
               
chr3:52419128-52418931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
92, 180
               

               
Conread position:
               
230-421
               

               
Cow position:
               
chr3:79398326-79398133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
230-424
               

               
Cow position:
               
chr3:2025384-2025186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
230-425
               

               
Cow position:
               
chr3:84137633-84137826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
230-427
               

               
Cow position:
               
chr3:18699927-18700127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
230-430
               

               
Cow position:
               
chr3:30180264-30180067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
106, 84
               

               
Conread position:
               
230-430
               

               
Cow position:
               
chr3:59588825-59588619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
87, 136
               

               
Conread position:
               
230-434
               

               
Cow position:
               
chr3:27246786-27246982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
186, 75
               

               
Conread position:
               
230-434
               

               
Cow position:
               
chr3:75966601-75966804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
119, 84
               

               
Conread position:
               
230-435
               

               
Cow position:
               
chr3:45744091-45743881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
77, 94
               

               
Conread position:
               
230-436
               

               
Cow position:
               
chr3:4461309-4461509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
186, 37
               

               
Conread position:
               
230-438
               

               
Cow position:
               
chr3:18831599-18831394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
130, 81
               

               
Conread position:
               
230-438
               

               
Cow position:
               
chr3:54739719-54739911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
181, 40
               

               
Conread position:
               
230-439
               

               
Cow position:
               
chr3:55730285-55730495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
82, 117
               

               
Conread position:
               
230-441
               

               
Cow position:
               
chr3:48253060-48252855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
110, 76
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr3:3556729-3556514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr3:7581537-7581748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
92, 43
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr3:20841698-20841904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr3:35624362-35624576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
82, 114
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr3:46792564-46792354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr3:58452226-58452017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
82, 130
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr3:59828207-59828424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr3:79824738-79824951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
82, 64
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr3:83215450-83215231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
230-445
               

               
Cow position:
               
chr3:18479115-18479332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
85, 118
               

               
Conread position:
               
230-446
               

               
Cow position:
               
chr3:23203048-23203267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 132
               

               
Conread position:
               
230-464
               

               
Cow position:
               
chr3:83454976-83455200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
189, 31
               

               
Conread position:
               
230-464
               

               
Cow position:
               
chr3:83889430-83889189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
82, 180
               

               
Conread position:
               
230-485
               

               
Cow position:
               
chr3:36160019-36160275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
190, 49
               

               
Conread position:
               
230-490
               

               
Cow position:
               
chr3:34871749-34871480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
82, 118
               

               
Conread position:
               
230-490
               

               
Cow position:
               
chr3:40100548-40100793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
189, 74
               

               
Conread position:
               
230-490
               

               
Cow position:
               
chr3:64197007-64196739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
230-491
               

               
Cow position:
               
chr3:59391944-59392202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 117
               

               
Conread position:
               
230-493
               

               
Cow position:
               
chr3:15953901-15954174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
230-493
               

               
Cow position:
               
chr3:68587201-68586933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 80
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:210503-210228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:1830393-1830663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
86, 17
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:2392788-2393051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
147, 88
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:3316627-3316901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
74, 166
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:7337606-7337872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
64, 38
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:9641736-9641477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
160, 82
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:13301669-13301936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:17235023-17235298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:18059885-18059613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
131, 127
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:18426519-18426788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
81, 159
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:23804683-23804428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
186, 37
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:26904280-26904022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 72
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:26992754-26992478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
82, 117
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:36375357-36375630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
78, 117
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:39661273-39661544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 173
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:44624998-44625252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:48241787-48241528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
193, 20
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:48468357-48468094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
82, 217
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:49482533-49482795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:54049848-54050114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 95
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:59597355-59597095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
11, 85
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:64280756-64281020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
14, 86
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:67929078-67929349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 65
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:70333788-70334052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
82, 114
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:71231579-71231310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 166
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:75080933-75080679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
189, 55
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:80597908-80597634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
86, 119
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:80733669-80733931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 201
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr3:83491261-83490998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
189, 72
               

               
Conread position:
               
230-496
               

               
Cow position:
               
chr3:3889396-3889661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
189, 84
               

               
Conread position:
               
230-496
               

               
Cow position:
               
chr3:70896220-70895956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
179, 89
               

               
Conread position:
               
231-365
               

               
Cow position:
               
chr3:42933663-42933527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
231-370
               

               
Cow position:
               
chr3:21081200-21081344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
231-392
               

               
Cow position:
               
chr3:77665376-77665531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
231-397
               

               
Cow position:
               
chr3:47417390-47417557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
231-397
               

               
Cow position:
               
chr3:83325387-83325228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
231-399
               

               
Cow position:
               
chr3:3262643-3262821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
231-399
               

               
Cow position:
               
chr3:68624399-68624230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
231-405
               

               
Cow position:
               
chr3:12637684-12637516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
231-406
               

               
Cow position:
               
chr3:4518004-4518177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr3:59681727-59681899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
231-414
               

               
Cow position:
               
chr3:80910777-80910593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
88, 127
               

               
Conread position:
               
231-417
               

               
Cow position:
               
chr3:20911231-20911415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 37
               

               
Conread position:
               
231-417
               

               
Cow position:
               
chr3:70333049-70333226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
231-422
               

               
Cow position:
               
chr3:56943750-56943936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
129, 37
               

               
Conread position:
               
231-422
               

               
Cow position:
               
chr3:58540337-58540531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 160
               

               
Conread position:
               
231-430
               

               
Cow position:
               
chr3:26783327-26783526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
82, 91
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr3:28902583-28902790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
125, 16
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr3:30357689-30357491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
188, 75
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr3:54067974-54067766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr3:59945307-59945093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr3:76267794-76268006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
184, 0
               

               
Conread position:
               
231-466
               

               
Cow position:
               
chr3:24596253-24596480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
188, 32
               

               
Conread position:
               
231-467
               

               
Cow position:
               
chr3:3947211-3946984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
188, 54
               

               
Conread position:
               
231-483
               

               
Cow position:
               
chr3:11276420-11276658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
56, 38
               

               
Conread position:
               
231-491
               

               
Cow position:
               
chr3:2396615-2396865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
218, 92
               

               
Conread position:
               
231-492
               

               
Cow position:
               
chr3:50768859-50768596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
100, 82
               

               
Conread position:
               
231-492
               

               
Cow position:
               
chr3:83474934-83474655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr3:2518361-2518620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
48, 84
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr3:18001366-18001112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
188, 39
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr3:45882079-45881815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 210
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr3:58317763-58318042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr3:65058879-65058613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
231-496
               

               
Cow position:
               
chr3:48072706-48072972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
99, 40
               

               
Conread position:
               
231-496
               

               
Cow position:
               
chr3:66014498-66014227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 200
               

               
Conread position:
               
232-320
               

               
Cow position:
               
chr3:623929-623841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
232-343
               

               
Cow position:
               
chr3:34938801-34938690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
232-358
               

               
Cow position:
               
chr3:49369788-49369665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
232-375
               

               
Cow position:
               
chr3:39967317-39967452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
232-397
               

               
Cow position:
               
chr3:19641244-19641073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
232-405
               

               
Cow position:
               
chr3:11198179-11198354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 53
               

               
Conread position:
               
232-407
               

               
Cow position:
               
chr3:24774821-24774658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
232-408
               

               
Cow position:
               
chr3:74050527-74050698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
232-413
               

               
Cow position:
               
chr3:57704511-57704335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
232-414
               

               
Cow position:
               
chr3:29891227-29891411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
76, 115
               

               
Conread position:
               
232-414
               

               
Cow position:
               
chr3:65022482-65022292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
232-414
               

               
Cow position:
               
chr3:84807147-84807330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
83, 40
               

               
Conread position:
               
232-415
               

               
Cow position:
               
chr3:47316199-47316382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 82
               

               
Conread position:
               
232-417
               

               
Cow position:
               
chr3:12899767-12899945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
232-422
               

               
Cow position:
               
chr3:29334232-29334424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
80, 14
               

               
Conread position:
               
232-424
               

               
Cow position:
               
chr3:41863801-41863612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
187, 88
               

               
Conread position:
               
232-424
               

               
Cow position:
               
chr3:63845119-63844927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 115
               

               
Conread position:
               
232-435
               

               
Cow position:
               
chr3:23818666-23818470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
232-439
               

               
Cow position:
               
chr3:67407188-67407394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
187, 82
               

               
Conread position:
               
232-441
               

               
Cow position:
               
chr3:8522975-8523180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
232-442
               

               
Cow position:
               
chr3:53703768-53703994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
75, 125
               

               
Conread position:
               
232-442
               

               
Cow position:
               
chr3:54435147-54434946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
232-443
               

               
Cow position:
               
chr3:74644739-74644525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
80, 131
               

               
Conread position:
               
232-448
               

               
Cow position:
               
chr3:73421304-73421530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
232-490
               

               
Cow position:
               
chr3:18687080-18686823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
187, 75
               

               
Conread position:
               
232-493
               

               
Cow position:
               
chr3:6182054-6182301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
232-493
               

               
Cow position:
               
chr3:26066166-26065916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
41, 74
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr3:2506297-2506564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
75, 142
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr3:16333983-16333712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 135
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr3:19711158-19711423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
77, 22
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr3:27274706-27274441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
187, 82
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr3:39873529-39873786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
189, 67
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr3:48459150-48459421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
187, 112
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr3:52487808-52487537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
73, 121
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr3:53150512-53150240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
76, 250
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr3:54100534-54100809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
83, 225
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr3:65413087-65413368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 251
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr3:68156906-68156646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr3:76156165-76155899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
187, 86
               

               
Conread position:
               
232-496
               

               
Cow position:
               
chr3:60264543-60264808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
187, 27
               

               
Conread position:
               
233-379
               

               
Cow position:
               
chr3:24370569-24370434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
233-383
               

               
Cow position:
               
chr3:22821031-22820884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
233-391
               

               
Cow position:
               
chr3:58929354-58929514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 114
               

               
Conread position:
               
233-399
               

               
Cow position:
               
chr3:54905784-54905627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
233-406
               

               
Cow position:
               
chr3:68565990-68565827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
233-409
               

               
Cow position:
               
chr3:43895885-43896057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
233-414
               

               
Cow position:
               
chr3:54781815-54782005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
72, 121
               

               
Conread position:
               
233-417
               

               
Cow position:
               
chr3:51233926-51234101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
233-418
               

               
Cow position:
               
chr3:49787734-49787553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
107, 83
               

               
Conread position:
               
233-424
               

               
Cow position:
               
chr3:46559538-46559725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
233-426
               

               
Cow position:
               
chr3:41510756-41510559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
233-439
               

               
Cow position:
               
chr3:1517335-1517540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
104, 70
               

               
Conread position:
               
233-442
               

               
Cow position:
               
chr3:7662035-7661825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
86, 179
               

               
Conread position:
               
233-442
               

               
Cow position:
               
chr3:75107950-75107743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
186, 76
               

               
Conread position:
               
233-442
               

               
Cow position:
               
chr3:82366307-82366098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
132, 171
               

               
Conread position:
               
233-444
               

               
Cow position:
               
chr3:2648330-2648543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 92
               

               
Conread position:
               
233-472
               

               
Cow position:
               
chr3:14547177-14546941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
186, 85
               

               
Conread position:
               
233-490
               

               
Cow position:
               
chr3:48363247-48362992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 75
               

               
Conread position:
               
233-492
               

               
Cow position:
               
chr3:19682884-19682605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
233-492
               

               
Cow position:
               
chr3:70761945-70762209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
78, 86
               

               
Conread position:
               
233-493
               

               
Cow position:
               
chr3:9117212-9116940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
54, 181
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr3:2630939-2630706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr3:12705369-12705634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
186, 84
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr3:24872869-24872626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr3:54506884-54506615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 86
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr3:57764391-57764139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
186, 40
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr3:73237361-73237105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
186, 79
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr3:78945644-78945923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
73, 205
               

               
Conread position:
               
233-495
               

               
Cow position:
               
chr3:76138637-76138391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
72, 113
               

               
Conread position:
               
234-392
               

               
Cow position:
               
chr3:4071592-4071751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
85, 125
               

               
Conread position:
               
234-392
               

               
Cow position:
               
chr3:16107198-16107347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
234-392
               

               
Cow position:
               
chr3:75777892-75778041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
234-396
               

               
Cow position:
               
chr3:8147346-8147510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
78, 59
               

               
Conread position:
               
234-397
               

               
Cow position:
               
chr3:59702351-59702183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 116
               

               
Conread position:
               
234-397
               

               
Cow position:
               
chr3:62789773-62789940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
78, 131
               

               
Conread position:
               
234-398
               

               
Cow position:
               
chr3:18471480-18471315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
234-398
               

               
Cow position:
               
chr3:55105969-55106135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
234-399
               

               
Cow position:
               
chr3:82175686-82175520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
82, 124
               

               
Conread position:
               
234-406
               

               
Cow position:
               
chr3:3453759-3453585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
234-406
               

               
Cow position:
               
chr3:19611176-19611346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
234-407
               

               
Cow position:
               
chr3:67942356-67942531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
83, 113
               

               
Conread position:
               
234-410
               

               
Cow position:
               
chr3:562612-562792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 59
               

               
Conread position:
               
234-416
               

               
Cow position:
               
chr3:33330011-33329813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
234-417
               

               
Cow position:
               
chr3:7381655-7381834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
76, 56
               

               
Conread position:
               
234-417
               

               
Cow position:
               
chr3:53428741-53428922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
234-424
               

               
Cow position:
               
chr3:23640516-23640330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
185, 79
               

               
Conread position:
               
234-424
               

               
Cow position:
               
chr3:84154582-84154402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
185, 80
               

               
Conread position:
               
234-439
               

               
Cow position:
               
chr3:19793074-19792877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
111, 33
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr3:8393516-8393319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr3:14194013-14194208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
185, 20
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr3:15153865-15153660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
185, 80
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr3:17694825-17695033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
78, 193
               

               
Conread position:
               
234-446
               

               
Cow position:
               
chr3:48851790-48852006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
234-458
               

               
Cow position:
               
chr3:52845732-52845508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 83
               

               
Conread position:
               
234-461
               

               
Cow position:
               
chr3:38864295-38864077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
153, 67
               

               
Conread position:
               
234-467
               

               
Cow position:
               
chr3:53384103-53384341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 65
               

               
Conread position:
               
234-469
               

               
Cow position:
               
chr3:45183644-45183899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 138
               

               
Conread position:
               
234-480
               

               
Cow position:
               
chr3:13329616-13329850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
157, 72
               

               
Conread position:
               
234-490
               

               
Cow position:
               
chr3:51578147-51578405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
72, 112
               

               
Conread position:
               
234-493
               

               
Cow position:
               
chr3:53790365-53790624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
121, 46
               

               
Conread position:
               
234-493
               

               
Cow position:
               
chr3:65019676-65019953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr3:15443549-15443818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 113
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr3:23920250-23920517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr3:38035411-38035679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
84, 114
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr3:45667166-45667433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
69, 111
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr3:46005838-46006103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
68, 147
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr3:52651903-52652170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
154, 90
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr3:53318586-53318316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr3:80072320-80072038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
88, 47
               

               
Conread position:
               
235-353
               

               
Cow position:
               
chr3:75974903-75975023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
235-380
               

               
Cow position:
               
chr3:29944036-29943888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
235-391
               

               
Cow position:
               
chr3:18764281-18764122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 129
               

               
Conread position:
               
235-391
               

               
Cow position:
               
chr3:22078254-22078096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
235-392
               

               
Cow position:
               
chr3:2636758-2636910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
85, 109
               

               
Conread position:
               
235-392
               

               
Cow position:
               
chr3:23734913-23735068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
121, 85
               

               
Conread position:
               
235-392
               

               
Cow position:
               
chr3:44725044-44724881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
235-397
               

               
Cow position:
               
chr3:60371160-60370997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 43
               

               
Conread position:
               
235-399
               

               
Cow position:
               
chr3:77098648-77098810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
235-411
               

               
Cow position:
               
chr3:70402814-70402645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
235-414
               

               
Cow position:
               
chr3:635354-635175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
75, 42
               

               
Conread position:
               
235-414
               

               
Cow position:
               
chr3:11027453-11027272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
235-414
               

               
Cow position:
               
chr3:61680493-61680315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 128
               

               
Conread position:
               
235-414
               

               
Cow position:
               
chr3:64800371-64800552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
83, 129
               

               
Conread position:
               
235-414
               

               
Cow position:
               
chr3:78258574-78258757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
69, 114
               

               
Conread position:
               
235-417
               

               
Cow position:
               
chr3:35075048-35074873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
235-417
               

               
Cow position:
               
chr3:43388949-43389133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
77, 112
               

               
Conread position:
               
235-417
               

               
Cow position:
               
chr3:49344868-49344688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
96, 26
               

               
Conread position:
               
235-417
               

               
Cow position:
               
chr3:79893320-79893503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 90
               

               
Conread position:
               
235-417
               

               
Cow position:
               
chr3:84174480-84174296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
235-424
               

               
Cow position:
               
chr3:58101851-58101666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
121, 85
               

               
Conread position:
               
235-426
               

               
Cow position:
               
chr3:80173175-80172987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
83, 98
               

               
Conread position:
               
235-430
               

               
Cow position:
               
chr3:2638109-2637907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
235-431
               

               
Cow position:
               
chr3:54350258-54350458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
71, 117
               

               
Conread position:
               
235-437
               

               
Cow position:
               
chr3:986191-985986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 109
               

               
Conread position:
               
235-437
               

               
Cow position:
               
chr3:18393224-18393420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
235-438
               

               
Cow position:
               
chr3:44594799-44594598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
78, 12
               

               
Conread position:
               
235-440
               

               
Cow position:
               
chr3:14517905-14518108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
122, 62
               

               
Conread position:
               
235-442
               

               
Cow position:
               
chr3:22888838-22889048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 57
               

               
Conread position:
               
235-444
               

               
Cow position:
               
chr3:38248832-38248618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
235-445
               

               
Cow position:
               
chr3:4120195-4120400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
184, 73
               

               
Conread position:
               
235-447
               

               
Cow position:
               
chr3:53604568-53604782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
84, 127
               

               
Conread position:
               
235-463
               

               
Cow position:
               
chr3:39605837-39606063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
87, 112
               

               
Conread position:
               
235-466
               

               
Cow position:
               
chr3:23131992-23132222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 210
               

               
Conread position:
               
235-468
               

               
Cow position:
               
chr3:31309178-31309409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
235-474
               

               
Cow position:
               
chr3:33002561-33002319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
119, 80
               

               
Conread position:
               
235-480
               

               
Cow position:
               
chr3:18459361-18459595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
105, 32
               

               
Conread position:
               
235-492
               

               
Cow position:
               
chr3:175119-174861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
176, 39
               

               
Conread position:
               
235-493
               

               
Cow position:
               
chr3:38828927-38828681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
105, 45
               

               
Conread position:
               
235-493
               

               
Cow position:
               
chr3:44960842-44961077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
184, 56
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:14553048-14552788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
184, 72
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:15228665-15228909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
184, 44
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:15950741-15951000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
38, 79
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:17456091-17456356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
87, 110
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:19586040-19585773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
184, 162
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:21866862-21867125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 58
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:22165239-22165506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 166
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:24468208-24468467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
78, 35
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:35055800-35056067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
77, 90
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:55189574-55189845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 92
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:55970691-55970418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 117
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:72342424-72342156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
73, 128
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:74533510-74533260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
184, 77
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:75853159-75853418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
184, 38
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:78092335-78092602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 123
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr3:83787618-83787348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 111
               

               
Conread position:
               
235-496
               

               
Cow position:
               
chr3:23105189-23105456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 72
               

               
Conread position:
               
235-496
               

               
Cow position:
               
chr3:39969687-39969956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 83
               

               
Conread position:
               
236-397
               

               
Cow position:
               
chr3:25702156-25702327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
86, 119
               

               
Conread position:
               
236-411
               

               
Cow position:
               
chr3:4931655-4931840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 135
               

               
Conread position:
               
236-414
               

               
Cow position:
               
chr3:83672030-83671853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
236-417
               

               
Cow position:
               
chr3:29234503-29234687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 28
               

               
Conread position:
               
236-417
               

               
Cow position:
               
chr3:45314527-45314339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
236-424
               

               
Cow position:
               
chr3:25735728-25735919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
83, 111
               

               
Conread position:
               
236-430
               

               
Cow position:
               
chr3:9718074-9718270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 111
               

               
Conread position:
               
236-493
               

               
Cow position:
               
chr3:70609800-70609537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
81, 47
               

               
Conread position:
               
236-494
               

               
Cow position:
               
chr3:73395290-73395033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
183, 53
               

               
Conread position:
               
238-381
               

               
Cow position:
               
chr3:83921489-83921357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
238-391
               

               
Cow position:
               
chr3:80023142-80023290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
238-493
               

               
Cow position:
               
chr3:74601285-74601024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr3:17221960-17222234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr3:49679307-49679043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 108
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr3:55124112-55124372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr3:74846552-74846800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
181, 59
               

               
Conread position:
               
239-417
               

               
Cow position:
               
chr3:1028474-1028653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 107
               

               
Conread position:
               
239-424
               

               
Cow position:
               
chr3:81400934-81401107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
239-434
               

               
Cow position:
               
chr3:64010636-64010835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
19, 120
               

               
Conread position:
               
239-461
               

               
Cow position:
               
chr3:23753656-23753442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
177, 69
               

               
Conread position:
               
239-489
               

               
Cow position:
               
chr3:75238633-75238374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 109
               

               
Conread position:
               
239-494
               

               
Cow position:
               
chr3:60597709-60597453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
102, 75
               

               
Conread position:
               
240-320
               

               
Cow position:
               
chr3:27670644-27670564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
81
               

               
Alignm identity:
               
73
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
240-337
               

               
Cow position:
               
chr3:5706442-5706543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
240-373
               

               
Cow position:
               
chr3:34392054-34392182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
240-386
               

               
Cow position:
               
chr3:69849127-69849267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
240-388
               

               
Cow position:
               
chr3:40343867-40344006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
240-392
               

               
Cow position:
               
chr3:621612-621454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
240-396
               

               
Cow position:
               
chr3:39996723-39996872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
117, 6
               

               
Conread position:
               
240-397
               

               
Cow position:
               
chr3:2637116-2636964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
111, 37
               

               
Conread position:
               
240-397
               

               
Cow position:
               
chr3:12090848-12090688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
67, 120
               

               
Conread position:
               
240-397
               

               
Cow position:
               
chr3:32436809-32436653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
240-397
               

               
Cow position:
               
chr3:72027810-72027652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 107
               

               
Conread position:
               
240-397
               

               
Cow position:
               
chr3:84250653-84250817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
240-398
               

               
Cow position:
               
chr3:74515165-74515324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 62
               

               
Conread position:
               
240-405
               

               
Cow position:
               
chr3:26393128-26393293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 90
               

               
Conread position:
               
240-406
               

               
Cow position:
               
chr3:77582277-77582111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
95, 84
               

               
Conread position:
               
240-407
               

               
Cow position:
               
chr3:19044597-19044761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 119
               

               
Conread position:
               
240-409
               

               
Cow position:
               
chr3:26977708-26977537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
240-409
               

               
Cow position:
               
chr3:34164117-34164281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
240-411
               

               
Cow position:
               
chr3:68648348-68648175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 123
               

               
Conread position:
               
240-414
               

               
Cow position:
               
chr3:58614635-58614454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 128
               

               
Conread position:
               
240-414
               

               
Cow position:
               
chr3:76056117-76056287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
240-417
               

               
Cow position:
               
chr3:76168458-76168637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
68, 107
               

               
Conread position:
               
240-424
               

               
Cow position:
               
chr3:49996546-49996733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
73, 124
               

               
Conread position:
               
240-425
               

               
Cow position:
               
chr3:56948925-56949099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
240-426
               

               
Cow position:
               
chr3:66884859-66885041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
87, 66
               

               
Conread position:
               
240-426
               

               
Cow position:
               
chr3:82424910-82425090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
183, 7
               

               
Conread position:
               
240-431
               

               
Cow position:
               
chr3:6886397-6886201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 117
               

               
Conread position:
               
240-439
               

               
Cow position:
               
chr3:15160688-15160492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
179, 74
               

               
Conread position:
               
240-442
               

               
Cow position:
               
chr3:9121013-9120814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
240-442
               

               
Cow position:
               
chr3:14601541-14601742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
160, 28
               

               
Conread position:
               
240-442
               

               
Cow position:
               
chr3:37041587-37041388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 23
               

               
Conread position:
               
240-442
               

               
Cow position:
               
chr3:53910277-53910078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 27
               

               
Conread position:
               
240-442
               

               
Cow position:
               
chr3:68303489-68303285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
240-442
               

               
Cow position:
               
chr3:83988705-83988502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
240-443
               

               
Cow position:
               
chr3:73335450-73335251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
179, 28
               

               
Conread position:
               
240-449
               

               
Cow position:
               
chr3:4549188-4548989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
179, 30
               

               
Conread position:
               
240-460
               

               
Cow position:
               
chr3:8540672-8540466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
176, 22
               

               
Conread position:
               
240-460
               

               
Cow position:
               
chr3:83699697-83699918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 94
               

               
Conread position:
               
240-471
               

               
Cow position:
               
chr3:2538408-2538191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 80
               

               
Conread position:
               
240-471
               

               
Cow position:
               
chr3:6299629-6299400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
240-490
               

               
Cow position:
               
chr3:20802469-20802708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
171, 78
               

               
Conread position:
               
240-490
               

               
Cow position:
               
chr3:53222183-53221929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
240-490
               

               
Cow position:
               
chr3:53875591-53875846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
69, 123
               

               
Conread position:
               
240-492
               

               
Cow position:
               
chr3:61224578-61224833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
101, 76
               

               
Conread position:
               
240-493
               

               
Cow position:
               
chr3:9662998-9663259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
240-493
               

               
Cow position:
               
chr3:47753408-47753136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
240-493
               

               
Cow position:
               
chr3:59610548-59610808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
176, 61
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:4319890-4319623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:10958073-10958331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 28
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:14599091-14598862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
131, 28
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:15159200-15158954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
82, 9
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:17936676-17936929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
179, 81
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:23408193-23408440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
176, 30
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:30463005-30463258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:32585324-32585064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
76, 233
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:59035214-59034949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:68616164-68616415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
179, 74
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:74234352-74234102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 21
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:75158526-75158271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
64, 27
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:75608659-75608408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
179, 71
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr3:78093222-78093472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 32
               

               
Conread position:
               
240-495
               

               
Cow position:
               
chr3:7330967-7331202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
179, 28
               

               
Conread position:
               
240-496
               

               
Cow position:
               
chr3:55177580-55177841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 73
               

               
Conread position:
               
241-399
               

               
Cow position:
               
chr3:59272001-59271844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
241-413
               

               
Cow position:
               
chr3:22868546-22868721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 80
               

               
Conread position:
               
241-414
               

               
Cow position:
               
chr3:24220410-24220580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
75, 106
               

               
Conread position:
               
241-417
               

               
Cow position:
               
chr3:46305632-46305456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 126
               

               
Conread position:
               
241-424
               

               
Cow position:
               
chr3:20065977-20066167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
241-430
               

               
Cow position:
               
chr3:27286685-27286499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
178, 79
               

               
Conread position:
               
241-431
               

               
Cow position:
               
chr3:31115108-31115290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
178, 76
               

               
Conread position:
               
241-437
               

               
Cow position:
               
chr3:63860440-63860639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
116, 120
               

               
Conread position:
               
241-442
               

               
Cow position:
               
chr3:11281939-11281735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
63, 122
               

               
Conread position:
               
241-442
               

               
Cow position:
               
chr3:75570276-75570483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 49
               

               
Conread position:
               
241-444
               

               
Cow position:
               
chr3:33252722-33252922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
116, 79
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr3:71478762-71478535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr3:21112472-21112704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
82, 60
               

               
Conread position:
               
241-481
               

               
Cow position:
               
chr3:19709275-19709050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
241-488
               

               
Cow position:
               
chr3:10668709-10668962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 70
               

               
Conread position:
               
241-488
               

               
Cow position:
               
chr3:74754485-74754240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
178, 62
               

               
Conread position:
               
241-490
               

               
Cow position:
               
chr3:10591343-10591603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
143, 57
               

               
Conread position:
               
241-492
               

               
Cow position:
               
chr3:22675937-22676185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
79, 98
               

               
Conread position:
               
241-494
               

               
Cow position:
               
chr3:7763828-7763568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 106
               

               
Conread position:
               
241-494
               

               
Cow position:
               
chr3:44932682-44932424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
178, 78
               

               
Conread position:
               
241-494
               

               
Cow position:
               
chr3:45647836-45647589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
30, 70
               

               
Conread position:
               
241-494
               

               
Cow position:
               
chr3:49328104-49327853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
241-494
               

               
Cow position:
               
chr3:49363277-49363026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 60
               

               
Conread position:
               
241-494
               

               
Cow position:
               
chr3:54373687-54373947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 106
               

               
Conread position:
               
241-494
               

               
Cow position:
               
chr3:59040740-59040480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 84
               

               
Conread position:
               
241-494
               

               
Cow position:
               
chr3:71474237-71474497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
178, 67
               

               
Conread position:
               
241-494
               

               
Cow position:
               
chr3:73837548-73837805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 77
               

               
Conread position:
               
241-494
               

               
Cow position:
               
chr3:82019672-82019931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
178, 73
               

               
Conread position:
               
242-417
               

               
Cow position:
               
chr3:70756470-70756647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
242-424
               

               
Cow position:
               
chr3:82195653-82195473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
242-430
               

               
Cow position:
               
chr3:10372425-10372252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
177, 21
               

               
Conread position:
               
242-439
               

               
Cow position:
               
chr3:56476843-56476654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
177, 41
               

               
Conread position:
               
242-442
               

               
Cow position:
               
chr3:20021437-20021238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
174, 76
               

               
Conread position:
               
242-494
               

               
Cow position:
               
chr3:53271002-53270741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
242-494
               

               
Cow position:
               
chr3:67930001-67930271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 147
               

               
Conread position:
               
242-494
               

               
Cow position:
               
chr3:76922504-76922751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
243-493
               

               
Cow position:
               
chr3:29813394-29813157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
243-494
               

               
Cow position:
               
chr3:12978447-12978704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
70, 82
               

               
Conread position:
               
244-399
               

               
Cow position:
               
chr3:53552817-53552967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
244-493
               

               
Cow position:
               
chr3:80565132-80564876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
245-398
               

               
Cow position:
               
chr3:56754369-56754519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
67, 80
               

               
Conread position:
               
245-411
               

               
Cow position:
               
chr3:62312964-62312797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
73, 118
               

               
Conread position:
               
245-411
               

               
Cow position:
               
chr3:62370223-62370056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
67, 118
               

               
Conread position:
               
245-414
               

               
Cow position:
               
chr3:83934890-83934723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
116, 83
               

               
Conread position:
               
245-417
               

               
Cow position:
               
chr3:83199679-83199506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
77, 62
               

               
Conread position:
               
245-442
               

               
Cow position:
               
chr3:26603380-26603586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
245-442
               

               
Cow position:
               
chr3:42796352-42796547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
73, 117
               

               
Conread position:
               
245-445
               

               
Cow position:
               
chr3:1889940-1890143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 178
               

               
Conread position:
               
245-465
               

               
Cow position:
               
chr3:48483344-48483123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
65, 22
               

               
Conread position:
               
246-417
               

               
Cow position:
               
chr3:61023855-61024028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
247-406
               

               
Cow position:
               
chr3:44534370-44534529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 99
               

               
Conread position:
               
247-414
               

               
Cow position:
               
chr3:8556677-8556836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
247-416
               

               
Cow position:
               
chr3:72255254-72255423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
57, 100
               

               
Conread position:
               
247-442
               

               
Cow position:
               
chr3:57577860-57577666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
66, 32
               

               
Conread position:
               
247-492
               

               
Cow position:
               
chr3:79196927-79196671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
84, 248
               

               
Conread position:
               
247-493
               

               
Cow position:
               
chr3:59000599-59000839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
196, 61
               

               
Conread position:
               
247-494
               

               
Cow position:
               
chr3:2675196-2674940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
247-494
               

               
Cow position:
               
chr3:81087472-81087721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 158
               

               
Conread position:
               
248-391
               

               
Cow position:
               
chr3:19793427-19793569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 97
               

               
Conread position:
               
248-399
               

               
Cow position:
               
chr3:10115458-10115311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
248-425
               

               
Cow position:
               
chr3:83812441-83812258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 105
               

               
Conread position:
               
248-442
               

               
Cow position:
               
chr3:66900564-66900764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
248-443
               

               
Cow position:
               
chr3:74787588-74787399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
248-485
               

               
Cow position:
               
chr3:40145630-40145387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
58, 210
               

               
Conread position:
               
248-490
               

               
Cow position:
               
chr3:53046495-53046747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
70, 191
               

               
Conread position:
               
248-493
               

               
Cow position:
               
chr3:74079475-74079726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
168, 66
               

               
Conread position:
               
248-494
               

               
Cow position:
               
chr3:19626345-19626598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
249-385
               

               
Cow position:
               
chr3:14589068-14589205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
61, 97
               

               
Conread position:
               
249-442
               

               
Cow position:
               
chr3:7566259-7566448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
167, 65
               

               
Conread position:
               
249-485
               

               
Cow position:
               
chr3:48477881-48478112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
250-406
               

               
Cow position:
               
chr3:5003793-5003639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
250-442
               

               
Cow position:
               
chr3:53083822-53084019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
250-469
               

               
Cow position:
               
chr3:3275756-3275543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
142, 64
               

               
Conread position:
               
250-492
               

               
Cow position:
               
chr3:18607824-18607575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
169, 54
               

               
Conread position:
               
250-494
               

               
Cow position:
               
chr3:70334531-70334783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
251-406
               

               
Cow position:
               
chr3:5737906-5737757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
251-492
               

               
Cow position:
               
chr3:11987488-11987242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
106, 55
               

               
Conread position:
               
252-442
               

               
Cow position:
               
chr3:2484161-2483973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
252-494
               

               
Cow position:
               
chr3:68627528-68627775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
78, 65
               

               
Conread position:
               
253-390
               

               
Cow position:
               
chr3:72556923-72556791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
253-449
               

               
Cow position:
               
chr3:11640894-11640695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
254-494
               

               
Cow position:
               
chr3:84250392-84250633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
146, 53
               

               
Conread position:
               
255-424
               

               
Cow position:
               
chr3:70431590-70431418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 121
               

               
Conread position:
               
255-494
               

               
Cow position:
               
chr3:60265099-60265329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
164, 63
               

               
Conread position:
               
256-404
               

               
Cow position:
               
chr3:49732895-49733045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
54, 102
               

               
Conread position:
               
256-442
               

               
Cow position:
               
chr3:35239166-35238982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
74, 62
               

               
Conread position:
               
259-443
               

               
Cow position:
               
chr3:82123401-82123580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
160, 16
               

               
Conread position:
               
259-486
               

               
Cow position:
               
chr3:27976370-27976607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
260-494
               

               
Cow position:
               
chr3:52608332-52608091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
159, 53
               

               
Conread position:
               
263-494
               

               
Cow position:
               
chr3:74134855-74134611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
265-431
               

               
Cow position:
               
chr3:19788685-19788850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 52
               

               
Conread position:
               
265-494
               

               
Cow position:
               
chr3:44102113-44101883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
134, 50
               

               
Conread position:
               
265-494
               

               
Cow position:
               
chr3:72391234-72390997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 97
               

               
Conread position:
               
266-442
               

               
Cow position:
               
chr3:16505339-16505506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
153, 52
               

               
Conread position:
               
266-490
               

               
Cow position:
               
chr3:73820217-73820455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
270-411
               

               
Cow position:
               
chr3:35582982-35582840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
271-494
               

               
Cow position:
               
chr3:26681674-26681892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
12, 47
               

               
Conread position:
               
272-427
               

               
Cow position:
               
chr3:28870946-28870791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
273-390
               

               
Cow position:
               
chr3:19435255-19435138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
273-494
               

               
Cow position:
               
chr3:12711773-12712006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
273-495
               

               
Cow position:
               
chr3:15080529-15080738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
150, 25
               

               
Conread position:
               
274-410
               

               
Cow position:
               
chr3:3292602-3292466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
126, 79
               

               
Conread position:
               
274-411
               

               
Cow position:
               
chr3:31352738-31352874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
274-417
               

               
Cow position:
               
chr3:25037857-25037997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
274-439
               

               
Cow position:
               
chr3:40961691-40961538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
274-490
               

               
Cow position:
               
chr3:77271141-77271358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
145, 49
               

               
Conread position:
               
274-494
               

               
Cow position:
               
chr3:38783745-38783528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 146
               

               
Conread position:
               
275-460
               

               
Cow position:
               
chr3:15237553-15237743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
7, 101
               

               
Conread position:
               
276-496
               

               
Cow position:
               
chr3:70565599-70565828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
280-494
               

               
Cow position:
               
chr3:75045739-75045965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 35
               

               
Conread position:
               
281-493
               

               
Cow position:
               
chr3:32409350-32409123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 198
               

               
Conread position:
               
283-494
               

               
Cow position:
               
chr3:73709175-73708959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
136, 56
               

               
Conread position:
               
285-415
               

               
Cow position:
               
chr3:47284937-47284810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
286-417
               

               
Cow position:
               
chr3:48783474-48783344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 39
               

               
Conread position:
               
288-490
               

               
Cow position:
               
chr3:79645304-79645525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
293-491
               

               
Cow position:
               
chr3:73461083-73460878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
295-492
               

               
Cow position:
               
chr3:15173198-15172991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
124, 179
               

               
Conread position:
               
296-494
               

               
Cow position:
               
chr3:3818900-3818706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 72
               

               
Conread position:
               
296-496
               

               
Cow position:
               
chr3:48296812-48296619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
299-494
               

               
Cow position:
               
chr3:20677729-20677923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
120, 101
               

               
Conread position:
               
300-494
               

               
Cow position:
               
chr3:34669621-34669815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
5, 17
               

               
Conread position:
               
302-414
               

               
Cow position:
               
chr3:27670524-27670411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
302-438
               

               
Cow position:
               
chr3:61467079-61467217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
302-442
               

               
Cow position:
               
chr3:55984208-55984068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
117, 82
               

               
Conread position:
               
302-442
               

               
Cow position:
               
chr3:74801958-74802097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
302-452
               

               
Cow position:
               
chr3:77589624-77589469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
302-487
               

               
Cow position:
               
chr3:4481052-4480858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
302-490
               

               
Cow position:
               
chr3:17447505-17447696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
117, 98
               

               
Conread position:
               
302-492
               

               
Cow position:
               
chr3:22716186-22716388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
302-493
               

               
Cow position:
               
chr3:74900533-74900726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
117, 47
               

               
Conread position:
               
302-494
               

               
Cow position:
               
chr3:10104150-10103958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
117, 90
               

               
Conread position:
               
302-494
               

               
Cow position:
               
chr3:13507580-13507376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
302-494
               

               
Cow position:
               
chr3:44330327-44330527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
302-494
               

               
Cow position:
               
chr3:62789067-62789268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
302-494
               

               
Cow position:
               
chr3:70900000-70899806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
139, 58
               

               
Conread position:
               
302-494
               

               
Cow position:
               
chr3:84175714-84175914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
117, 21
               

               
Conread position:
               
302-495
               

               
Cow position:
               
chr3:53508721-53508528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
117, 143
               

               
Conread position:
               
303-413
               

               
Cow position:
               
chr3:20175157-20175047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
303-494
               

               
Cow position:
               
chr3:26874700-26874504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
303-494
               

               
Cow position:
               
chr3:35621411-35621214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
30, 162
               

               
Conread position:
               
303-494
               

               
Cow position:
               
chr3:56059918-56059719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
303-494
               

               
Cow position:
               
chr3:59621539-59621735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
304-421
               

               
Cow position:
               
chr3:53256635-53256520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
304-443
               

               
Cow position:
               
chr3:21997682-21997820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
305-494
               

               
Cow position:
               
chr3:15506556-15506357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 88
               

               
Conread position:
               
305-494
               

               
Cow position:
               
chr3:73442989-73443175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 65
               

               
Conread position:
               
307-494
               

               
Cow position:
               
chr3:67704649-67704454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
112, 11
               

               
Conread position:
               
308-438
               

               
Cow position:
               
chr3:64648594-64648465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 9
               

               
Conread position:
               
308-442
               

               
Cow position:
               
chr3:24372025-24371891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
111, 89
               

               
Conread position:
               
308-494
               

               
Cow position:
               
chr3:55835716-55835913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
23, 166
               

               
Conread position:
               
308-494
               

               
Cow position:
               
chr3:80053440-80053627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
308-494
               

               
Cow position:
               
chr3:80581759-80581576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
135, 92
               

               
Conread position:
               
309-480
               

               
Cow position:
               
chr3:33693922-33693746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
312-492
               

               
Cow position:
               
chr3:116290-116106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
313-494
               

               
Cow position:
               
chr3:3738580-3738399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
159, 84
               

               
Conread position:
               
313-494
               

               
Cow position:
               
chr3:74243091-74242905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 22
               

               
Conread position:
               
318-492
               

               
Cow position:
               
chr3:59208888-59208728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
318-494
               

               
Cow position:
               
chr3:55271951-55272135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
319-494
               

               
Cow position:
               
chr3:26218960-26219140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
323-494
               

               
Cow position:
               
chr3:38691317-38691495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
323-494
               

               
Cow position:
               
chr3:79292917-79292741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
96, 74
               

               
Conread position:
               
324-430
               

               
Cow position:
               
chr3:16601530-16601423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
324-442
               

               
Cow position:
               
chr3:41652464-41652345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
324-442
               

               
Cow position:
               
chr3:51349911-51349792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
324-490
               

               
Cow position:
               
chr3:58767351-58767175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
325-425
               

               
Cow position:
               
chr3:60595588-60595487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
329-494
               

               
Cow position:
               
chr3:5097290-5097118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
329-494
               

               
Cow position:
               
chr3:29887337-29887512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 46
               

               
Conread position:
               
329-494
               

               
Cow position:
               
chr3:59799331-59799159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
331-494
               

               
Cow position:
               
chr3:55109532-55109705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
333-494
               

               
Cow position:
               
chr3:3472119-3471949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
333-494
               

               
Cow position:
               
chr3:58968824-58968988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
83, 125
               

               
Conread position:
               
339-490
               

               
Cow position:
               
chr3:20205326-20205475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
86, 102
               
Show alignments to all cow chromosomes.