Non-Coding RNA Search

Cow genome map


           Conread name:
           Pig1-94N05
        

               Conread position:
               197-442
               

               Cow position:
               chr5:40241998-40241765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               219, 44
               

               Conread position:
               208-409
               

               Cow position:
               chr5:49207076-49207274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               159
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               5, 33
               

               Conread position:
               208-446
               

               Cow position:
               chr5:43858165-43858405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               183
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               110, 8
               

               Conread position:
               209-427
               

               Cow position:
               chr5:19972553-19972773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               27, 75
               

               Conread position:
               214-442
               

               Cow position:
               chr5:52138191-52137954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               31, 8
               

               Conread position:
               215-494
               

               Cow position:
               chr5:25035007-25035282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 7
               

               Conread position:
               218-494
               

               Cow position:
               chr5:65941005-65941291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 125
               

               Conread position:
               219-412
               

               Cow position:
               chr5:29895413-29895221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               219-467
               

               Cow position:
               chr5:18062064-18062323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               23, 238
               

               Conread position:
               219-493
               

               Cow position:
               chr5:56071099-56070818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 22
               

               Conread position:
               220-386
               

               Cow position:
               chr5:71387442-71387283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               15, 87
               

               Conread position:
               220-399
               

               Cow position:
               chr5:5030682-5030506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               15, 71
               

               Conread position:
               220-417
               

               Cow position:
               chr5:53976291-53976092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               89, 127
               

               Conread position:
               220-428
               

               Cow position:
               chr5:6876724-6876934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               101, 23
               

               Conread position:
               220-442
               

               Cow position:
               chr5:12557045-12557270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               181, 0
               

               Conread position:
               221-383
               

               Cow position:
               chr5:28660472-28660309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               221-494
               

               Cow position:
               chr5:21829108-21828827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 49
               

               Conread position:
               221-494
               

               Cow position:
               chr5:57934878-57935148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               210
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               19, 82
               

               Conread position:
               222-392
               

               Cow position:
               chr5:47960023-47960191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               23, 93
               

               Conread position:
               222-397
               

               Cow position:
               chr5:45436259-45436430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               11, 34
               

               Conread position:
               222-417
               

               Cow position:
               chr5:24915285-24915482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               222-417
               

               Cow position:
               chr5:69427223-69427408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               119, 25
               

               Conread position:
               222-441
               

               Cow position:
               chr5:64139803-64139580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               40, 65
               

               Conread position:
               222-488
               

               Cow position:
               chr5:61914812-61914537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               14, 227
               

               Conread position:
               222-494
               

               Cow position:
               chr5:32338720-32339005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               15, 31
               

               Conread position:
               223-399
               

               Cow position:
               chr5:67340121-67339946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               14, 92
               

               Conread position:
               223-414
               

               Cow position:
               chr5:46499802-46499608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               13, 125
               

               Conread position:
               223-440
               

               Cow position:
               chr5:26167659-26167442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               11, 27
               

               Conread position:
               223-442
               

               Cow position:
               chr5:46129427-46129650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               14, 51
               

               Conread position:
               223-467
               

               Cow position:
               chr5:74039767-74040007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               191, 70
               

               Conread position:
               223-492
               

               Cow position:
               chr5:55232587-55232842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               198
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               126, 19
               

               Conread position:
               223-493
               

               Cow position:
               chr5:3549567-3549825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               223, 20
               

               Conread position:
               223-494
               

               Cow position:
               chr5:46022818-46023097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               14, 55
               

               Conread position:
               223-494
               

               Cow position:
               chr5:50858175-50857897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               95, 124
               

               Conread position:
               223-494
               

               Cow position:
               chr5:61456084-61455806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               40, 17
               

               Conread position:
               224-342
               

               Cow position:
               chr5:6669903-6670022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               100
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               91, 17
               

               Conread position:
               224-351
               

               Cow position:
               chr5:13874000-13874130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               98, 23
               

               Conread position:
               224-404
               

               Cow position:
               chr5:50713512-50713699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               224-436
               

               Cow position:
               chr5:6086103-6086318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               164
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               224-443
               

               Cow position:
               chr5:71788932-71788711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               5, 39
               

               Conread position:
               224-494
               

               Cow position:
               chr5:13717322-13717606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               46, 122
               

               Conread position:
               224-494
               

               Cow position:
               chr5:31052626-31052346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               84, 64
               

               Conread position:
               225-378
               

               Cow position:
               chr5:44868592-44868441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               225-403
               

               Cow position:
               chr5:20127144-20126968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               225-407
               

               Cow position:
               chr5:24464975-24464802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               87, 52
               

               Conread position:
               225-410
               

               Cow position:
               chr5:58401802-58401621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               225-426
               

               Cow position:
               chr5:62996196-62995992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               87, 122
               

               Conread position:
               225-442
               

               Cow position:
               chr5:5257050-5257269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               76, 86
               

               Conread position:
               225-483
               

               Cow position:
               chr5:28224679-28224426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               194, 87
               

               Conread position:
               225-493
               

               Cow position:
               chr5:6443906-6444189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               86, 176
               

               Conread position:
               225-493
               

               Cow position:
               chr5:42845356-42845635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               21, 52
               

               Conread position:
               225-494
               

               Cow position:
               chr5:41009775-41010036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               205
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               97, 15
               

               Conread position:
               225-494
               

               Cow position:
               chr5:43922934-43923197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               169, 65
               

               Conread position:
               226-385
               

               Cow position:
               chr5:34639360-34639199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               226-417
               

               Cow position:
               chr5:695090-694909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               90, 42
               

               Conread position:
               226-424
               

               Cow position:
               chr5:20387391-20387177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               226-430
               

               Cow position:
               chr5:50578926-50579135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               13, 102
               

               Conread position:
               226-442
               

               Cow position:
               chr5:33482948-33482740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               111, 47
               

               Conread position:
               226-489
               

               Cow position:
               chr5:52211455-52211705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               133, 97
               

               Conread position:
               226-490
               

               Cow position:
               chr5:19752538-19752269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               209
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               6, 77
               

               Conread position:
               226-494
               

               Cow position:
               chr5:3582789-3582526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               197
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               193, 14
               

               Conread position:
               226-494
               

               Cow position:
               chr5:30805386-30805129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               14, 43
               

               Conread position:
               226-494
               

               Cow position:
               chr5:35685169-35684897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               68, 37
               

               Conread position:
               227-314
               

               Cow position:
               chr5:54067766-54067853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               88
               

               Alignm identity:
               76
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               227-351
               

               Cow position:
               chr5:21374881-21375003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               101
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               227-382
               

               Cow position:
               chr5:39242001-39242155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               227-389
               

               Cow position:
               chr5:25450179-25450027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               227-391
               

               Cow position:
               chr5:53824878-53825043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               92, 119
               

               Conread position:
               227-397
               

               Cow position:
               chr5:25462317-25462153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               227-397
               

               Cow position:
               chr5:41530701-41530875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               95, 122
               

               Conread position:
               227-397
               

               Cow position:
               chr5:43611934-43611763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               85, 40
               

               Conread position:
               227-398
               

               Cow position:
               chr5:22957642-22957474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               14, 91
               

               Conread position:
               227-399
               

               Cow position:
               chr5:8136694-8136534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               227-404
               

               Cow position:
               chr5:64843730-64843913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               227-404
               

               Cow position:
               chr5:75478683-75478857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               132, 34
               

               Conread position:
               227-407
               

               Cow position:
               chr5:19294283-19294471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               14, 122
               

               Conread position:
               227-410
               

               Cow position:
               chr5:37253657-37253481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               227-414
               

               Cow position:
               chr5:29829653-29829841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               85, 19
               

               Conread position:
               227-414
               

               Cow position:
               chr5:29979728-29979910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               113
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               55, 75
               

               Conread position:
               227-414
               

               Cow position:
               chr5:57497191-57497376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               132, 91
               

               Conread position:
               227-417
               

               Cow position:
               chr5:17826421-17826230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               85, 120
               

               Conread position:
               227-417
               

               Cow position:
               chr5:19972767-19972959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               227-424
               

               Cow position:
               chr5:30562166-30561969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               18, 90
               

               Conread position:
               227-425
               

               Cow position:
               chr5:22102788-22102597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               90, 41
               

               Conread position:
               227-427
               

               Cow position:
               chr5:55799282-55799081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               80, 43
               

               Conread position:
               227-430
               

               Cow position:
               chr5:52668274-52668071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               86, 120
               

               Conread position:
               227-440
               

               Cow position:
               chr5:33273932-33273716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               87, 177
               

               Conread position:
               227-440
               

               Cow position:
               chr5:57101291-57101501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               192, 86
               

               Conread position:
               227-442
               

               Cow position:
               chr5:11562492-11562704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               14, 33
               

               Conread position:
               227-442
               

               Cow position:
               chr5:34914819-34915034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               44, 92
               

               Conread position:
               227-442
               

               Cow position:
               chr5:39937351-39937135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               93, 27
               

               Conread position:
               227-442
               

               Cow position:
               chr5:45186880-45187098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               46, 135
               

               Conread position:
               227-442
               

               Cow position:
               chr5:47743853-47743647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               192, 15
               

               Conread position:
               227-442
               

               Cow position:
               chr5:50824818-50824611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               192, 84
               

               Conread position:
               227-442
               

               Cow position:
               chr5:54312834-54312620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               192, 23
               

               Conread position:
               227-442
               

               Cow position:
               chr5:55068935-55068725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               192, 50
               

               Conread position:
               227-442
               

               Cow position:
               chr5:57062293-57062510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               57, 90
               

               Conread position:
               227-442
               

               Cow position:
               chr5:66339307-66339098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               50, 16
               

               Conread position:
               227-451
               

               Cow position:
               chr5:50723283-50723057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               91, 136
               

               Conread position:
               227-466
               

               Cow position:
               chr5:35969775-35969530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               84, 217
               

               Conread position:
               227-486
               

               Cow position:
               chr5:12322576-12322838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               192, 76
               

               Conread position:
               227-488
               

               Cow position:
               chr5:26548908-26549175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 87
               

               Conread position:
               227-489
               

               Cow position:
               chr5:30233148-30232871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               206
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               14, 136
               

               Conread position:
               227-492
               

               Cow position:
               chr5:15364105-15363843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               192, 77
               

               Conread position:
               227-493
               

               Cow position:
               chr5:26467862-26467585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               162, 36
               

               Conread position:
               227-493
               

               Cow position:
               chr5:57755799-57756069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               82, 70
               

               Conread position:
               227-494
               

               Cow position:
               chr5:12654674-12654939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               130, 79
               

               Conread position:
               227-494
               

               Cow position:
               chr5:22738332-22738069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               95, 75
               

               Conread position:
               227-494
               

               Cow position:
               chr5:29097597-29097328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               195, 74
               

               Conread position:
               227-494
               

               Cow position:
               chr5:33834277-33834005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               10, 100
               

               Conread position:
               227-494
               

               Cow position:
               chr5:35826835-35826564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               16, 93
               

               Conread position:
               227-494
               

               Cow position:
               chr5:42670638-42670902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               189, 63
               

               Conread position:
               227-494
               

               Cow position:
               chr5:59081957-59082234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               75, 248
               

               Conread position:
               227-494
               

               Cow position:
               chr5:59395899-59395618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               81, 120
               

               Conread position:
               227-494
               

               Cow position:
               chr5:60016399-60016128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               98, 90
               

               Conread position:
               227-494
               

               Cow position:
               chr5:72903002-72903268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               14, 96
               

               Conread position:
               227-496
               

               Cow position:
               chr5:35976728-35976476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               192, 14
               

               Conread position:
               227-496
               

               Cow position:
               chr5:57372039-57371755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               87, 132
               

               Conread position:
               228-399
               

               Cow position:
               chr5:63300312-63300141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               228-414
               

               Cow position:
               chr5:71015652-71015837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               84, 13
               

               Conread position:
               228-416
               

               Cow position:
               chr5:62011918-62011729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               7, 41
               

               Conread position:
               228-494
               

               Cow position:
               chr5:17999262-17999531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               90, 71
               

               Conread position:
               228-495
               

               Cow position:
               chr5:65776141-65776422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               196
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               14, 63
               

               Conread position:
               229-357
               

               Cow position:
               chr5:30487460-30487329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               229-389
               

               Cow position:
               chr5:64061246-64061092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               229-392
               

               Cow position:
               chr5:12504561-12504720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               229-399
               

               Cow position:
               chr5:51053415-51053586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               229-419
               

               Cow position:
               chr5:57687347-57687538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               84, 118
               

               Conread position:
               229-431
               

               Cow position:
               chr5:75760035-75760244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               75, 179
               

               Conread position:
               229-434
               

               Cow position:
               chr5:36823102-36822914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               229-442
               

               Cow position:
               chr5:7410179-7409971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               190, 94
               

               Conread position:
               229-492
               

               Cow position:
               chr5:30628925-30629196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               209
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               93, 16
               

               Conread position:
               229-494
               

               Cow position:
               chr5:21617688-21617418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 85
               

               Conread position:
               229-494
               

               Cow position:
               chr5:55956143-55955868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               137, 89
               

               Conread position:
               229-494
               

               Cow position:
               chr5:56014955-56014690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               190, 73
               

               Conread position:
               229-494
               

               Cow position:
               chr5:57101564-57101821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               137, 39
               

               Conread position:
               230-339
               

               Cow position:
               chr5:41757845-41757734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               230-342
               

               Cow position:
               chr5:21237661-21237771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               94
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               61, 85
               

               Conread position:
               230-345
               

               Cow position:
               chr5:20736647-20736760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               230-355
               

               Cow position:
               chr5:43434770-43434897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               230-366
               

               Cow position:
               chr5:40740094-40740235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               230-376
               

               Cow position:
               chr5:14000871-14000731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               230-385
               

               Cow position:
               chr5:56624282-56624440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               230-385
               

               Cow position:
               chr5:57231862-57231711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               111, 90
               

               Conread position:
               230-386
               

               Cow position:
               chr5:75711905-75712064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               92, 114
               

               Conread position:
               230-389
               

               Cow position:
               chr5:59958403-59958247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               11, 90
               

               Conread position:
               230-390
               

               Cow position:
               chr5:15770220-15770384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               230-390
               

               Cow position:
               chr5:55749804-55749965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               89, 125
               

               Conread position:
               230-392
               

               Cow position:
               chr5:56477437-56477276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               105, 17
               

               Conread position:
               230-396
               

               Cow position:
               chr5:14168078-14167908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               75, 157
               

               Conread position:
               230-397
               

               Cow position:
               chr5:46479015-46479177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               230-398
               

               Cow position:
               chr5:9559646-9559485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               12, 79
               

               Conread position:
               230-398
               

               Cow position:
               chr5:32975995-32975822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               81, 38
               

               Conread position:
               230-399
               

               Cow position:
               chr5:1678822-1678651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               82, 116
               

               Conread position:
               230-399
               

               Cow position:
               chr5:4824385-4824211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               230-399
               

               Cow position:
               chr5:15364503-15364332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               83, 118
               

               Conread position:
               230-399
               

               Cow position:
               chr5:26149267-26149097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               82, 69
               

               Conread position:
               230-399
               

               Cow position:
               chr5:59662825-59662995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               88, 116
               

               Conread position:
               230-404
               

               Cow position:
               chr5:38079606-38079428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               87, 38
               

               Conread position:
               230-405
               

               Cow position:
               chr5:34533553-34533386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               230-406
               

               Cow position:
               chr5:5016655-5016481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               21, 87
               

               Conread position:
               230-410
               

               Cow position:
               chr5:34918575-34918398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               146
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               230-411
               

               Cow position:
               chr5:19052559-19052741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               230-414
               

               Cow position:
               chr5:40152719-40152533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               83, 117
               

               Conread position:
               230-414
               

               Cow position:
               chr5:40531300-40531490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               38, 89
               

               Conread position:
               230-414
               

               Cow position:
               chr5:56434115-56433929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               230-414
               

               Cow position:
               chr5:57556261-57556077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               59, 37
               

               Conread position:
               230-415
               

               Cow position:
               chr5:61201993-61201806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               82, 133
               

               Conread position:
               230-416
               

               Cow position:
               chr5:55162861-55162672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               11, 79
               

               Conread position:
               230-417
               

               Cow position:
               chr5:58698-58887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               82, 118
               

               Conread position:
               230-417
               

               Cow position:
               chr5:7177384-7177196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               230-417
               

               Cow position:
               chr5:17834926-17835113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               82, 117
               

               Conread position:
               230-417
               

               Cow position:
               chr5:23209191-23209002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               230-417
               

               Cow position:
               chr5:35459064-35459249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               77, 85
               

               Conread position:
               230-417
               

               Cow position:
               chr5:36868969-36868782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               83, 128
               

               Conread position:
               230-417
               

               Cow position:
               chr5:37255101-37255290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               230-417
               

               Cow position:
               chr5:43370961-43371150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               85, 95
               

               Conread position:
               230-417
               

               Cow position:
               chr5:43839765-43839954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               82, 119
               

               Conread position:
               230-417
               

               Cow position:
               chr5:48061876-48062072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               24, 124
               

               Conread position:
               230-417
               

               Cow position:
               chr5:61049566-61049377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               82, 117
               

               Conread position:
               230-424
               

               Cow position:
               chr5:2827607-2827414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               84, 37
               

               Conread position:
               230-430
               

               Cow position:
               chr5:8736045-8736248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               73, 161
               

               Conread position:
               230-430
               

               Cow position:
               chr5:39036014-39035811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               164
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               73, 118
               

               Conread position:
               230-431
               

               Cow position:
               chr5:1693860-1694058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               189, 85
               

               Conread position:
               230-431
               

               Cow position:
               chr5:49821663-49821458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               165
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               230-431
               

               Cow position:
               chr5:57303005-57302798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               79, 196
               

               Conread position:
               230-437
               

               Cow position:
               chr5:13270783-13270993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               78, 135
               

               Conread position:
               230-440
               

               Cow position:
               chr5:46063725-46063518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               86, 17
               

               Conread position:
               230-442
               

               Cow position:
               chr5:5760077-5760294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               74, 134
               

               Conread position:
               230-442
               

               Cow position:
               chr5:50101146-50101357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               164, 90
               

               Conread position:
               230-442
               

               Cow position:
               chr5:55965661-55965875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               82, 16
               

               Conread position:
               230-468
               

               Cow position:
               chr5:63241211-63240967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               230-469
               

               Cow position:
               chr5:52853199-52852965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               111, 90
               

               Conread position:
               230-487
               

               Cow position:
               chr5:69333733-69333478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               82, 117
               

               Conread position:
               230-488
               

               Cow position:
               chr5:26262453-26262709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               67, 73
               

               Conread position:
               230-490
               

               Cow position:
               chr5:9893893-9894161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               202
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               189, 48
               

               Conread position:
               230-490
               

               Cow position:
               chr5:22795438-22795178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               131, 42
               

               Conread position:
               230-490
               

               Cow position:
               chr5:58447060-58446771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               230-491
               

               Cow position:
               chr5:12673248-12673504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               205, 87
               

               Conread position:
               230-492
               

               Cow position:
               chr5:44028079-44028342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               80, 17
               

               Conread position:
               230-492
               

               Cow position:
               chr5:64555763-64555492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               82, 207
               

               Conread position:
               230-494
               

               Cow position:
               chr5:20128286-20128015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               78, 133
               

               Conread position:
               230-494
               

               Cow position:
               chr5:29060705-29060960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               11, 81
               

               Conread position:
               230-494
               

               Cow position:
               chr5:33032400-33032134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               73, 40
               

               Conread position:
               230-494
               

               Cow position:
               chr5:34562241-34561973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               189, 58
               

               Conread position:
               230-494
               

               Cow position:
               chr5:34976608-34976882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               83, 17
               

               Conread position:
               230-494
               

               Cow position:
               chr5:35208495-35208225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               76, 225
               

               Conread position:
               230-494
               

               Cow position:
               chr5:35246875-35247151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               203
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               25, 265
               

               Conread position:
               230-494
               

               Cow position:
               chr5:36038773-36039045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 53
               

               Conread position:
               230-494
               

               Cow position:
               chr5:41885146-41884898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               230-494
               

               Cow position:
               chr5:43408108-43408398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               112, 260
               

               Conread position:
               230-494
               

               Cow position:
               chr5:44847795-44848059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               188, 87
               

               Conread position:
               230-494
               

               Cow position:
               chr5:46681491-46681754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               85, 29
               

               Conread position:
               230-494
               

               Cow position:
               chr5:52001392-52001660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               83, 38
               

               Conread position:
               230-494
               

               Cow position:
               chr5:56071920-56072191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               66, 22
               

               Conread position:
               230-494
               

               Cow position:
               chr5:57393071-57393340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               73, 131
               

               Conread position:
               230-494
               

               Cow position:
               chr5:57526695-57526957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               82, 118
               

               Conread position:
               230-494
               

               Cow position:
               chr5:59626740-59627013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 95
               

               Conread position:
               230-494
               

               Cow position:
               chr5:61726189-61725927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               205, 65
               

               Conread position:
               230-494
               

               Cow position:
               chr5:66257866-66257599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               123, 93
               

               Conread position:
               230-494
               

               Cow position:
               chr5:66972662-66972389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               204
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               82, 48
               

               Conread position:
               230-494
               

               Cow position:
               chr5:71845694-71845956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               193, 34
               

               Conread position:
               230-496
               

               Cow position:
               chr5:4280676-4280407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               190, 84
               

               Conread position:
               231-370
               

               Cow position:
               chr5:1122331-1122192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               81, 123
               

               Conread position:
               231-370
               

               Cow position:
               chr5:43982548-43982408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               231-379
               

               Cow position:
               chr5:48104491-48104344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               121, 83
               

               Conread position:
               231-385
               

               Cow position:
               chr5:31317232-31317077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               231-390
               

               Cow position:
               chr5:15077402-15077562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               231-397
               

               Cow position:
               chr5:31648646-31648484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               106, 89
               

               Conread position:
               231-397
               

               Cow position:
               chr5:32731189-32731344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               231-397
               

               Cow position:
               chr5:55177111-55176952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               231-399
               

               Cow position:
               chr5:19968129-19968296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               85, 33
               

               Conread position:
               231-399
               

               Cow position:
               chr5:20667549-20667710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               231-399
               

               Cow position:
               chr5:35235456-35235626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               231-406
               

               Cow position:
               chr5:6245434-6245606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               231-407
               

               Cow position:
               chr5:58519185-58519361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               81, 34
               

               Conread position:
               231-411
               

               Cow position:
               chr5:60117659-60117479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               71, 29
               

               Conread position:
               231-414
               

               Cow position:
               chr5:62341261-62341076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               81, 39
               

               Conread position:
               231-417
               

               Cow position:
               chr5:29256477-29256662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               81, 94
               

               Conread position:
               231-417
               

               Cow position:
               chr5:40122377-40122565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               231-427
               

               Cow position:
               chr5:3817456-3817653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               78, 94
               

               Conread position:
               231-428
               

               Cow position:
               chr5:54404630-54404821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               82, 48
               

               Conread position:
               231-430
               

               Cow position:
               chr5:11303335-11303144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               21, 54
               

               Conread position:
               231-442
               

               Cow position:
               chr5:3743563-3743341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               20, 120
               

               Conread position:
               231-442
               

               Cow position:
               chr5:65552491-65552692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               188, 12
               

               Conread position:
               231-442
               

               Cow position:
               chr5:69383482-69383274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 79
               

               Conread position:
               231-442
               

               Cow position:
               chr5:75227982-75228180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               122, 68
               

               Conread position:
               231-488
               

               Cow position:
               chr5:3772073-3771815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               110, 72
               

               Conread position:
               231-488
               

               Cow position:
               chr5:46512537-46512796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               80, 39
               

               Conread position:
               231-490
               

               Cow position:
               chr5:11667953-11668219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               231-492
               

               Cow position:
               chr5:67932235-67932503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               71, 244
               

               Conread position:
               231-494
               

               Cow position:
               chr5:7057166-7057439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               81, 135
               

               Conread position:
               231-494
               

               Cow position:
               chr5:45472505-45472241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               152, 27
               

               Conread position:
               231-494
               

               Cow position:
               chr5:47757003-47756736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               81, 94
               

               Conread position:
               231-494
               

               Cow position:
               chr5:72895917-72895646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               130, 125
               

               Conread position:
               232-340
               

               Cow position:
               chr5:55414210-55414316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               91
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               232-380
               

               Cow position:
               chr5:3626950-3627095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               17, 75
               

               Conread position:
               232-380
               

               Cow position:
               chr5:4728299-4728156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               232-380
               

               Cow position:
               chr5:57585106-57584958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               232-385
               

               Cow position:
               chr5:17537449-17537596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               232-388
               

               Cow position:
               chr5:55943488-55943642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               232-391
               

               Cow position:
               chr5:31234934-31234783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               232-397
               

               Cow position:
               chr5:34787801-34787639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               232-397
               

               Cow position:
               chr5:56643298-56643132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               232-407
               

               Cow position:
               chr5:70189308-70189128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               232-411
               

               Cow position:
               chr5:2309328-2309505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               128, 109
               

               Conread position:
               232-411
               

               Cow position:
               chr5:22186636-22186469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               232-411
               

               Cow position:
               chr5:52029631-52029458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               38, 10
               

               Conread position:
               232-417
               

               Cow position:
               chr5:28881452-28881647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               75, 123
               

               Conread position:
               232-417
               

               Cow position:
               chr5:51800379-51800566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               59, 94
               

               Conread position:
               232-427
               

               Cow position:
               chr5:7675928-7676121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               187, 86
               

               Conread position:
               232-431
               

               Cow position:
               chr5:26147818-26147621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               160
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               188, 17
               

               Conread position:
               232-438
               

               Cow position:
               chr5:51289371-51289568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               187, 67
               

               Conread position:
               232-442
               

               Cow position:
               chr5:2240759-2240970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               81, 189
               

               Conread position:
               232-442
               

               Cow position:
               chr5:4267890-4267689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               187, 61
               

               Conread position:
               232-442
               

               Cow position:
               chr5:6520236-6520030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               172, 80
               

               Conread position:
               232-442
               

               Cow position:
               chr5:30949685-30949896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               89, 36
               

               Conread position:
               232-442
               

               Cow position:
               chr5:51246907-51247112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               134, 31
               

               Conread position:
               232-442
               

               Cow position:
               chr5:64060676-64060465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               81, 93
               

               Conread position:
               232-443
               

               Cow position:
               chr5:44796506-44796715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               168
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 60
               

               Conread position:
               232-486
               

               Cow position:
               chr5:42050774-42050519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               184, 48
               

               Conread position:
               232-494
               

               Cow position:
               chr5:17086788-17087061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 12
               

               Conread position:
               232-494
               

               Cow position:
               chr5:22242544-22242815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               146, 58
               

               Conread position:
               232-494
               

               Cow position:
               chr5:29828278-29828010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               69, 117
               

               Conread position:
               232-494
               

               Cow position:
               chr5:45845460-45845733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               206
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               125, 82
               

               Conread position:
               232-494
               

               Cow position:
               chr5:49341805-49342088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               218
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               72, 255
               

               Conread position:
               232-494
               

               Cow position:
               chr5:62172628-62172375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               202
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               184, 41
               

               Conread position:
               232-494
               

               Cow position:
               chr5:66366738-66366468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               104, 27
               

               Conread position:
               232-496
               

               Cow position:
               chr5:44993809-44994083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               17, 208
               

               Conread position:
               232-496
               

               Cow position:
               chr5:65136487-65136232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               213, 30
               

               Conread position:
               233-341
               

               Cow position:
               chr5:72160312-72160206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               92
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               233-382
               

               Cow position:
               chr5:14419788-14419930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               233-384
               

               Cow position:
               chr5:56563977-56563832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               124, 75
               

               Conread position:
               233-385
               

               Cow position:
               chr5:45854730-45854574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               75, 132
               

               Conread position:
               233-392
               

               Cow position:
               chr5:19811749-19811592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               233-396
               

               Cow position:
               chr5:75116341-75116507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               69, 133
               

               Conread position:
               233-398
               

               Cow position:
               chr5:3677957-3677784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               233-399
               

               Cow position:
               chr5:4981674-4981513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               233-406
               

               Cow position:
               chr5:20345767-20345593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               100, 118
               

               Conread position:
               233-407
               

               Cow position:
               chr5:52849310-52849140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               233-409
               

               Cow position:
               chr5:60153996-60153828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               233-411
               

               Cow position:
               chr5:60207934-60207759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               233-414
               

               Cow position:
               chr5:2468984-2469159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               85, 28
               

               Conread position:
               233-415
               

               Cow position:
               chr5:65140529-65140343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               79, 113
               

               Conread position:
               233-417
               

               Cow position:
               chr5:60209917-60210098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               60, 88
               

               Conread position:
               233-417
               

               Cow position:
               chr5:65760305-65760487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               78, 115
               

               Conread position:
               233-442
               

               Cow position:
               chr5:14903837-14904050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               86, 46
               

               Conread position:
               233-442
               

               Cow position:
               chr5:18574411-18574194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               70, 122
               

               Conread position:
               233-442
               

               Cow position:
               chr5:44163144-44163350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               178, 46
               

               Conread position:
               233-442
               

               Cow position:
               chr5:51298486-51298693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               186, 90
               

               Conread position:
               233-442
               

               Cow position:
               chr5:72045447-72045655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               9, 30
               

               Conread position:
               233-461
               

               Cow position:
               chr5:70271096-70270868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               93, 85
               

               Conread position:
               233-490
               

               Cow position:
               chr5:51065744-51065496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               210, 75
               

               Conread position:
               233-490
               

               Cow position:
               chr5:73167785-73168036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               186, 85
               

               Conread position:
               233-492
               

               Cow position:
               chr5:65967503-65967771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               24, 76
               

               Conread position:
               233-494
               

               Cow position:
               chr5:991703-991427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               133, 246
               

               Conread position:
               233-494
               

               Cow position:
               chr5:7044477-7044746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               183, 80
               

               Conread position:
               233-494
               

               Cow position:
               chr5:14550353-14550620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               233-494
               

               Cow position:
               chr5:18289347-18289091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               186, 78
               

               Conread position:
               233-494
               

               Cow position:
               chr5:19278474-19278739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               76, 113
               

               Conread position:
               233-494
               

               Cow position:
               chr5:41935426-41935692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               86, 126
               

               Conread position:
               233-494
               

               Cow position:
               chr5:47602037-47601780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 58
               

               Conread position:
               233-494
               

               Cow position:
               chr5:52164944-52165217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               79, 133
               

               Conread position:
               233-494
               

               Cow position:
               chr5:57737341-57737065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               233-494
               

               Cow position:
               chr5:74643455-74643710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               186, 79
               

               Conread position:
               234-339
               

               Cow position:
               chr5:8149081-8149184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               92
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               234-349
               

               Cow position:
               chr5:13471337-13471221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               96
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               74, 91
               

               Conread position:
               234-349
               

               Cow position:
               chr5:32672605-32672722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               234-386
               

               Cow position:
               chr5:61593491-61593343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               85, 12
               

               Conread position:
               234-392
               

               Cow position:
               chr5:24108830-24108990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               78, 113
               

               Conread position:
               234-397
               

               Cow position:
               chr5:51012228-51012064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               78, 110
               

               Conread position:
               234-399
               

               Cow position:
               chr5:17987665-17987831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               69, 129
               

               Conread position:
               234-406
               

               Cow position:
               chr5:21339032-21339213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               234-406
               

               Cow position:
               chr5:55783733-55783907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               79, 129
               

               Conread position:
               234-410
               

               Cow position:
               chr5:12668764-12668932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               234-411
               

               Cow position:
               chr5:36634936-36634757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               68, 113
               

               Conread position:
               234-414
               

               Cow position:
               chr5:63187648-63187829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               82, 140
               

               Conread position:
               234-415
               

               Cow position:
               chr5:55041439-55041256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               234-417
               

               Cow position:
               chr5:6438798-6438976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               234-417
               

               Cow position:
               chr5:35394211-35394388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               234-417
               

               Cow position:
               chr5:46421826-46421631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               234-417
               

               Cow position:
               chr5:49920153-49919969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               79, 15
               

               Conread position:
               234-417
               

               Cow position:
               chr5:54751039-54750852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               234-422
               

               Cow position:
               chr5:20994861-20995046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               79, 44
               

               Conread position:
               234-423
               

               Cow position:
               chr5:60212815-60212625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               84, 113
               

               Conread position:
               234-424
               

               Cow position:
               chr5:16185608-16185415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               234-442
               

               Cow position:
               chr5:11769500-11769290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               78, 187
               

               Conread position:
               234-442
               

               Cow position:
               chr5:12300139-12299930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               16, 55
               

               Conread position:
               234-442
               

               Cow position:
               chr5:19335549-19335762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               95, 116
               

               Conread position:
               234-442
               

               Cow position:
               chr5:52136824-52137035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               234-442
               

               Cow position:
               chr5:56860671-56860466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               166
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               69, 101
               

               Conread position:
               234-442
               

               Cow position:
               chr5:59627320-59627119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               127, 33
               

               Conread position:
               234-443
               

               Cow position:
               chr5:26894485-26894704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               234-443
               

               Cow position:
               chr5:52108031-52108250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               69, 13
               

               Conread position:
               234-443
               

               Cow position:
               chr5:53055331-53055543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               234-444
               

               Cow position:
               chr5:33560510-33560717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               102, 86
               

               Conread position:
               234-475
               

               Cow position:
               chr5:46540832-46541071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               188
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               177, 80
               

               Conread position:
               234-492
               

               Cow position:
               chr5:29903315-29903555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               185, 58
               

               Conread position:
               234-494
               

               Cow position:
               chr5:11427008-11427274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               79, 33
               

               Conread position:
               234-494
               

               Cow position:
               chr5:41165310-41165047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               204
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               185, 80
               

               Conread position:
               234-494
               

               Cow position:
               chr5:50942932-50943186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 83
               

               Conread position:
               234-494
               

               Cow position:
               chr5:51554857-51555110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               82, 115
               

               Conread position:
               234-494
               

               Cow position:
               chr5:52831706-52831427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               45, 121
               

               Conread position:
               234-494
               

               Cow position:
               chr5:70951664-70951915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               15, 83
               

               Conread position:
               235-347
               

               Cow position:
               chr5:17254001-17254109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               93
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               235-370
               

               Cow position:
               chr5:49508572-49508706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               131, 72
               

               Conread position:
               235-376
               

               Cow position:
               chr5:74050051-74049910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               112
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               235-379
               

               Cow position:
               chr5:22898092-22898226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               235-388
               

               Cow position:
               chr5:58487600-58487449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               122, 83
               

               Conread position:
               235-389
               

               Cow position:
               chr5:12566316-12566470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               95, 88
               

               Conread position:
               235-390
               

               Cow position:
               chr5:54340993-54340838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               77, 25
               

               Conread position:
               235-399
               

               Cow position:
               chr5:67634281-67634454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               235-406
               

               Cow position:
               chr5:31216826-31216996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               87, 76
               

               Conread position:
               235-406
               

               Cow position:
               chr5:43846151-43846329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               75, 44
               

               Conread position:
               235-410
               

               Cow position:
               chr5:67950558-67950734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               83, 100
               

               Conread position:
               235-411
               

               Cow position:
               chr5:2355745-2355571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               83, 38
               

               Conread position:
               235-414
               

               Cow position:
               chr5:30221550-30221730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               83, 122
               

               Conread position:
               235-414
               

               Cow position:
               chr5:43465754-43465573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               83, 112
               

               Conread position:
               235-414
               

               Cow position:
               chr5:57086835-57087015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               83, 127
               

               Conread position:
               235-417
               

               Cow position:
               chr5:19079470-19079297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               235-417
               

               Cow position:
               chr5:54127514-54127335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               107, 88
               

               Conread position:
               235-417
               

               Cow position:
               chr5:56327499-56327676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               122, 32
               

               Conread position:
               235-424
               

               Cow position:
               chr5:64140765-64140577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               172, 0
               

               Conread position:
               235-427
               

               Cow position:
               chr5:12562533-12562726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               149, 79
               

               Conread position:
               235-430
               

               Cow position:
               chr5:5808324-5808130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               72, 101
               

               Conread position:
               235-431
               

               Cow position:
               chr5:35190333-35190140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               159
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               184, 77
               

               Conread position:
               235-431
               

               Cow position:
               chr5:46710810-46710615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               67, 112
               

               Conread position:
               235-431
               

               Cow position:
               chr5:46715710-46715515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               67, 112
               

               Conread position:
               235-442
               

               Cow position:
               chr5:5856087-5855877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               235-442
               

               Cow position:
               chr5:16937807-16938003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               184, 79
               

               Conread position:
               235-442
               

               Cow position:
               chr5:43604366-43604160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               84, 110
               

               Conread position:
               235-442
               

               Cow position:
               chr5:56613336-56613545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               235-442
               

               Cow position:
               chr5:60514798-60515009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               29, 114
               

               Conread position:
               235-442
               

               Cow position:
               chr5:60948359-60948152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               184, 162
               

               Conread position:
               235-444
               

               Cow position:
               chr5:17828250-17828462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               77, 97
               

               Conread position:
               235-444
               

               Cow position:
               chr5:25366326-25366116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               159, 28
               

               Conread position:
               235-461
               

               Cow position:
               chr5:39815273-39815499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               76, 33
               

               Conread position:
               235-466
               

               Cow position:
               chr5:12902146-12901910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               74, 128
               

               Conread position:
               235-467
               

               Cow position:
               chr5:56059837-56060074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               44, 217
               

               Conread position:
               235-479
               

               Cow position:
               chr5:63627313-63627551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               86, 24
               

               Conread position:
               235-489
               

               Cow position:
               chr5:30303108-30302859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               184, 83
               

               Conread position:
               235-490
               

               Cow position:
               chr5:32394829-32394565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               61, 129
               

               Conread position:
               235-490
               

               Cow position:
               chr5:34625175-34624922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               165, 75
               

               Conread position:
               235-493
               

               Cow position:
               chr5:70678418-70678678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               77, 90
               

               Conread position:
               235-494
               

               Cow position:
               chr5:1247490-1247224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               61, 31
               

               Conread position:
               235-494
               

               Cow position:
               chr5:31475910-31475645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               75, 14
               

               Conread position:
               235-494
               

               Cow position:
               chr5:40237415-40237174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               184, 28
               

               Conread position:
               235-494
               

               Cow position:
               chr5:45405274-45405002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               25, 114
               

               Conread position:
               236-392
               

               Cow position:
               chr5:41736408-41736252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               66, 34
               

               Conread position:
               236-396
               

               Cow position:
               chr5:74065294-74065451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               236-494
               

               Cow position:
               chr5:5110833-5111114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               76, 34
               

               Conread position:
               236-495
               

               Cow position:
               chr5:49474328-49474588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               183, 78
               

               Conread position:
               237-399
               

               Cow position:
               chr5:63763890-63763728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               76, 88
               

               Conread position:
               237-420
               

               Cow position:
               chr5:48919023-48918851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               237-494
               

               Cow position:
               chr5:63234597-63234865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               238-397
               

               Cow position:
               chr5:66287165-66287010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               121, 11
               

               Conread position:
               238-398
               

               Cow position:
               chr5:25598054-25597896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               16, 83
               

               Conread position:
               238-417
               

               Cow position:
               chr5:7139617-7139788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               238-431
               

               Cow position:
               chr5:60523951-60523765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               157
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               181, 66
               

               Conread position:
               238-434
               

               Cow position:
               chr5:44734503-44734698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               181, 80
               

               Conread position:
               238-438
               

               Cow position:
               chr5:44722289-44722489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               88, 79
               

               Conread position:
               238-451
               

               Cow position:
               chr5:9352725-9352520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               162, 30
               

               Conread position:
               238-494
               

               Cow position:
               chr5:17062856-17063129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               74, 9
               

               Conread position:
               239-492
               

               Cow position:
               chr5:66466536-66466281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               187
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               68, 30
               

               Conread position:
               239-493
               

               Cow position:
               chr5:55756190-55756463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               71, 108
               

               Conread position:
               240-351
               

               Cow position:
               chr5:74690030-74690143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               98
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               240-355
               

               Cow position:
               chr5:50703825-50703942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               240-379
               

               Cow position:
               chr5:18579111-18578975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               103, 74
               

               Conread position:
               240-389
               

               Cow position:
               chr5:19626798-19626651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               240-391
               

               Cow position:
               chr5:9486861-9487014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               240-395
               

               Cow position:
               chr5:36370496-36370346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               79, 37
               

               Conread position:
               240-397
               

               Cow position:
               chr5:718371-718215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               101, 77
               

               Conread position:
               240-397
               

               Cow position:
               chr5:55949456-55949614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               78, 122
               

               Conread position:
               240-397
               

               Cow position:
               chr5:57447442-57447601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               66, 107
               

               Conread position:
               240-399
               

               Cow position:
               chr5:41984563-41984418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               240-399
               

               Cow position:
               chr5:68537442-68537605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               240-404
               

               Cow position:
               chr5:25447109-25446944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               72, 107
               

               Conread position:
               240-406
               

               Cow position:
               chr5:19561224-19561392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               72, 123
               

               Conread position:
               240-409
               

               Cow position:
               chr5:52192216-52192376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               240-409
               

               Cow position:
               chr5:60100684-60100523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               240-411
               

               Cow position:
               chr5:74887677-74887849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               240-414
               

               Cow position:
               chr5:44810015-44810191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               73, 123
               

               Conread position:
               240-414
               

               Cow position:
               chr5:56525488-56525664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               69, 123
               

               Conread position:
               240-417
               

               Cow position:
               chr5:57399029-57399207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               73, 123
               

               Conread position:
               240-417
               

               Cow position:
               chr5:59335995-59335815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               73, 124
               

               Conread position:
               240-421
               

               Cow position:
               chr5:41226782-41226964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               73, 119
               

               Conread position:
               240-424
               

               Cow position:
               chr5:61580502-61580319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               102, 30
               

               Conread position:
               240-425
               

               Cow position:
               chr5:27084521-27084333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               79, 123
               

               Conread position:
               240-426
               

               Cow position:
               chr5:38647878-38647675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               240-427
               

               Cow position:
               chr5:31527171-31527359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               80, 28
               

               Conread position:
               240-427
               

               Cow position:
               chr5:71445614-71445424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               68, 123
               

               Conread position:
               240-428
               

               Cow position:
               chr5:30492569-30492758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               72, 124
               

               Conread position:
               240-431
               

               Cow position:
               chr5:34288032-34288220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               162
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 74
               

               Conread position:
               240-431
               

               Cow position:
               chr5:37842057-37842249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               153
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               91, 70
               

               Conread position:
               240-434
               

               Cow position:
               chr5:17105067-17104880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               162
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               179, 69
               

               Conread position:
               240-442
               

               Cow position:
               chr5:20843176-20843376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               240-442
               

               Cow position:
               chr5:39447303-39447516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               240-442
               

               Cow position:
               chr5:53935332-53935528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               116, 71
               

               Conread position:
               240-442
               

               Cow position:
               chr5:66659736-66659528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               82, 126
               

               Conread position:
               240-443
               

               Cow position:
               chr5:34347511-34347710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               72, 119
               

               Conread position:
               240-443
               

               Cow position:
               chr5:64175908-64176108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               179, 71
               

               Conread position:
               240-445
               

               Cow position:
               chr5:59384464-59384671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               50, 40
               

               Conread position:
               240-449
               

               Cow position:
               chr5:11539830-11540038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               68, 120
               

               Conread position:
               240-466
               

               Cow position:
               chr5:56222314-56222547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               70, 29
               

               Conread position:
               240-469
               

               Cow position:
               chr5:30247303-30247528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               63, 115
               

               Conread position:
               240-485
               

               Cow position:
               chr5:37941585-37941823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               93, 105
               

               Conread position:
               240-488
               

               Cow position:
               chr5:7012627-7012881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               73, 108
               

               Conread position:
               240-489
               

               Cow position:
               chr5:62812049-62811789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               72, 124
               

               Conread position:
               240-490
               

               Cow position:
               chr5:54875471-54875735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               70, 97
               

               Conread position:
               240-492
               

               Cow position:
               chr5:53835943-53835676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               82, 140
               

               Conread position:
               240-492
               

               Cow position:
               chr5:69338036-69337786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               179, 46
               

               Conread position:
               240-492
               

               Cow position:
               chr5:70591764-70591532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               210, 28
               

               Conread position:
               240-493
               

               Cow position:
               chr5:57074115-57074372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 23
               

               Conread position:
               240-494
               

               Cow position:
               chr5:11229449-11229708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               198
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               240-494
               

               Cow position:
               chr5:12760898-12761151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               72, 85
               

               Conread position:
               240-494
               

               Cow position:
               chr5:14314738-14314486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               179, 67
               

               Conread position:
               240-494
               

               Cow position:
               chr5:30253962-30253702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 60
               

               Conread position:
               240-494
               

               Cow position:
               chr5:30276909-30276658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 81
               

               Conread position:
               240-494
               

               Cow position:
               chr5:35228922-35229169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               78, 25
               

               Conread position:
               240-494
               

               Cow position:
               chr5:35763466-35763236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               195, 23
               

               Conread position:
               240-494
               

               Cow position:
               chr5:38833336-38833082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               198
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               203, 27
               

               Conread position:
               240-494
               

               Cow position:
               chr5:40109706-40109452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               200
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               179, 66
               

               Conread position:
               240-494
               

               Cow position:
               chr5:43403131-43402861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               206
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               72, 106
               

               Conread position:
               240-494
               

               Cow position:
               chr5:44446653-44446907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               199
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               179, 67
               

               Conread position:
               240-494
               

               Cow position:
               chr5:47316753-47317010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               74, 27
               

               Conread position:
               240-494
               

               Cow position:
               chr5:49440630-49440913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               240-494
               

               Cow position:
               chr5:56028323-56028567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               240-494
               

               Cow position:
               chr5:56548788-56548541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               121, 72
               

               Conread position:
               240-494
               

               Cow position:
               chr5:63192532-63192781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               180, 78
               

               Conread position:
               240-494
               

               Cow position:
               chr5:63647255-63647513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               83, 62
               

               Conread position:
               240-494
               

               Cow position:
               chr5:69099941-69099679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               204
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               86, 77
               

               Conread position:
               240-496
               

               Cow position:
               chr5:14920704-14920973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               241-379
               

               Cow position:
               chr5:21520229-21520358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               241-393
               

               Cow position:
               chr5:69765813-69765965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               72, 84
               

               Conread position:
               241-397
               

               Cow position:
               chr5:54712847-54713000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               71, 118
               

               Conread position:
               241-406
               

               Cow position:
               chr5:53175028-53175202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               241-407
               

               Cow position:
               chr5:63939837-63940006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               67, 150
               

               Conread position:
               241-408
               

               Cow position:
               chr5:38420829-38420655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               60, 157
               

               Conread position:
               241-410
               

               Cow position:
               chr5:36143199-36143036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               241-413
               

               Cow position:
               chr5:5017592-5017425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               81, 29
               

               Conread position:
               241-414
               

               Cow position:
               chr5:14454265-14454089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               77, 107
               

               Conread position:
               241-417
               

               Cow position:
               chr5:56549589-56549411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               66, 106
               

               Conread position:
               241-430
               

               Cow position:
               chr5:15991424-15991608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               178, 77
               
UCSC Genome Browser
               Conread position:
               241-442
               

               Cow position:
               chr5:12873973-12873770 (view  custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               41, 85
               
UCSC Genome Browser
               
               
               
Conread position: 241-456

               
               
               
Cow position: chr5:35145556-35145335 (view  custom track)

               
               
               
Alignm length: 226

               
               
               
Alignm identity: 162

               
               
               
Alignm E-value: 6e-26

               
               
               
Alignm gaps (pig, cow): 68, 138
UCSC Genome Browser
               
               
               
Conread position: 241-492

               
               
               
Cow position: chr5:22667291-22667040 (view  custom track)

               
               
               
Alignm length: 255

               
               
               
Alignm identity: 199

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 90, 66

               
               
               Conread position:241-494
               
               
               Cow position:chr5:16893557-16893812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):178, 74

               
               
               Conread position:241-494
               
               
               Cow position:chr5:20288037-20288303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:241-494
               
               
               Cow position:chr5:24996000-24996262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 49

               
               
               Conread position:241-494
               
               
               Cow position:chr5:25495130-25495388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:242-385
               
               
               Cow position:chr5:32975338-32975483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 121

               
               
               Conread position:242-387
               
               
               Cow position:chr5:64142434-64142580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:242-390
               
               
               Cow position:chr5:54554965-54555118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 105

               
               
               Conread position:242-406
               
               
               Cow position:chr5:21721255-21721414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:242-441
               
               
               Cow position:chr5:12434755-12434563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):177, 63

               
               
               Conread position:242-489
               
               
               Cow position:chr5:73253625-73253381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):177, 72

               
               
               Conread position:242-493
               
               
               Cow position:chr5:42064427-42064165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:242-494
               
               
               Cow position:chr5:61784505-61784767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:243-427
               
               
               Cow position:chr5:29599333-29599510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:243-468
               
               
               Cow position:chr5:20779180-20779400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:243-492
               
               
               Cow position:chr5:50600265-50600017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):116, 71

               
               
               Conread position:243-494
               
               
               Cow position:chr5:55966654-55966918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 112

               
               
               Conread position:243-494
               
               
               Cow position:chr5:60598968-60599233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 219

               
               
               Conread position:243-494
               
               
               Cow position:chr5:66551673-66551938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 235

               
               
               Conread position:244-442
               
               
               Cow position:chr5:28302538-28302726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):175, 24

               
               
               Conread position:244-490
               
               
               Cow position:chr5:30845324-30845076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):175, 76

               
               
               Conread position:244-494
               
               
               Cow position:chr5:47696242-47696483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):173, 63

               
               
               Conread position:245-398
               
               
               Cow position:chr5:52723792-52723637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:245-414
               
               
               Cow position:chr5:69682130-69682301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:245-490
               
               
               Cow position:chr5:53947116-53946861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 110

               
               
               Conread position:245-492
               
               
               Cow position:chr5:74581003-74580752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):174, 14

               
               
               Conread position:246-399
               
               
               Cow position:chr5:53779371-53779218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 100

               
               
               Conread position:246-417
               
               
               Cow position:chr5:51233808-51233974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:247-399
               
               
               Cow position:chr5:42753111-42752968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-411
               
               
               Cow position:chr5:6503661-6503830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr5:16668908-16668742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr5:62572746-62572577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:247-422
               
               
               Cow position:chr5:6695764-6695587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 109

               
               
               Conread position:247-440
               
               
               Cow position:chr5:48867255-48867443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 61

               
               
               Conread position:247-442
               
               
               Cow position:chr5:55942162-55942360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:247-492
               
               
               Cow position:chr5:17554820-17555071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):153, 77

               
               
               Conread position:247-494
               
               
               Cow position:chr5:64523649-64523906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):80, 58

               
               
               Conread position:247-494
               
               
               Cow position:chr5:66582185-66581926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:248-406
               
               
               Cow position:chr5:50087982-50087822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:248-406
               
               
               Cow position:chr5:56754146-56753989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:248-414
               
               
               Cow position:chr5:53980538-53980706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:248-416
               
               
               Cow position:chr5:65745554-65745719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:248-417
               
               
               Cow position:chr5:54753035-54753207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:248-442
               
               
               Cow position:chr5:49501604-49501805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:248-494
               
               
               Cow position:chr5:45397779-45397533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):175, 22

               
               
               Conread position:248-494
               
               
               Cow position:chr5:57994666-57994906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:248-494
               
               
               Cow position:chr5:68719081-68718830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:249-424
               
               
               Cow position:chr5:53795234-53795062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:249-494
               
               
               Cow position:chr5:12351599-12351829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):15, 65

               
               
               Conread position:250-384
               
               
               Cow position:chr5:16637638-16637781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:250-390
               
               
               Cow position:chr5:37646287-37646153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:250-399
               
               
               Cow position:chr5:50525732-50525588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:250-417
               
               
               Cow position:chr5:20812761-20812591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:250-417
               
               
               Cow position:chr5:30035281-30035112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:250-424
               
               
               Cow position:chr5:38040356-38040527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):169, 64

               
               
               Conread position:250-440
               
               
               Cow position:chr5:5847632-5847824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:250-490
               
               
               Cow position:chr5:60741457-60741209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 75

               
               
               Conread position:250-494
               
               
               Cow position:chr5:26097502-26097256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):63, 74

               
               
               Conread position:250-494
               
               
               Cow position:chr5:72006285-72006532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):169, 20

               
               
               Conread position:252-434
               
               
               Cow position:chr5:4864745-4864570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):167, 52

               
               
               Conread position:252-439
               
               
               Cow position:chr5:44053836-44054031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 66

               
               
               Conread position:252-494
               
               
               Cow position:chr5:15721878-15722105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):167, 18

               
               
               Conread position:253-417
               
               
               Cow position:chr5:16939383-16939549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:253-440
               
               
               Cow position:chr5:44196721-44196908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):77, 54

               
               
               Conread position:253-496
               
               
               Cow position:chr5:17767944-17768185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:254-494
               
               
               Cow position:chr5:65753068-65752818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:255-442
               
               
               Cow position:chr5:45225613-45225794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):167, 65

               
               
               Conread position:255-494
               
               
               Cow position:chr5:41713495-41713258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 44

               
               
               Conread position:256-430
               
               
               Cow position:chr5:51125812-51125978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):163, 45

               
               
               Conread position:256-442
               
               
               Cow position:chr5:46704094-46704280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):72, 57

               
               
               Conread position:256-442
               
               
               Cow position:chr5:57419590-57419775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):163, 58

               
               
               Conread position:258-432
               
               
               Cow position:chr5:41983928-41983753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 154

               
               
               Conread position:259-416
               
               
               Cow position:chr5:32935948-32935790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 118

               
               
               Conread position:259-494
               
               
               Cow position:chr5:64026812-64027047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):44, 190

               
               
               Conread position:260-496
               
               
               Cow position:chr5:55795768-55796006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):137, 47

               
               
               Conread position:261-442
               
               
               Cow position:chr5:12247540-12247718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):158, 56

               
               
               Conread position:261-490
               
               
               Cow position:chr5:57686540-57686776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):158, 59

               
               
               Conread position:262-442
               
               
               Cow position:chr5:17383954-17384130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 142

               
               
               Conread position:263-442
               
               
               Cow position:chr5:54350172-54350342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):156, 44

               
               
               Conread position:266-442
               
               
               Cow position:chr5:38169089-38168913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):94, 53

               
               
               Conread position:266-496
               
               
               Cow position:chr5:69461531-69461289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):123, 104

               
               
               Conread position:271-442
               
               
               Cow position:chr5:65679780-65679951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:272-494
               
               
               Cow position:chr5:17602015-17602240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 148

               
               
               Conread position:273-397
               
               
               Cow position:chr5:36722307-36722431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:274-387
               
               
               Cow position:chr5:29507401-29507514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-399
               
               
               Cow position:chr5:29010444-29010319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:275-442
               
               
               Cow position:chr5:17604949-17605115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 45

               
               
               Conread position:276-489
               
               
               Cow position:chr5:7193599-7193383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):143, 47

               
               
               Conread position:281-417
               
               
               Cow position:chr5:60126877-60126735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:283-465
               
               
               Cow position:chr5:11289209-11289395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 80

               
               
               Conread position:283-494
               
               
               Cow position:chr5:60183979-60183762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:289-494
               
               
               Cow position:chr5:62378956-62378752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 114

               
               
               Conread position:291-494
               
               
               Cow position:chr5:37646377-37646585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:293-440
               
               
               Cow position:chr5:7723834-7723686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:293-494
               
               
               Cow position:chr5:67118587-67118379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):126, 25

               
               
               Conread position:296-493
               
               
               Cow position:chr5:20422024-20422226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 106

               
               
               Conread position:301-480
               
               
               Cow position:chr5:61875698-61875517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):120, 140

               
               
               Conread position:302-442
               
               
               Cow position:chr5:51490087-51490226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:302-442
               
               
               Cow position:chr5:54060436-54060297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr5:55129503-55129362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-490
               
               
               Cow position:chr5:43992484-43992287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-492
               
               
               Cow position:chr5:4166800-4166607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 60

               
               
               Conread position:302-492
               
               
               Cow position:chr5:7698160-7697968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):67, 71

               
               
               Conread position:302-494
               
               
               Cow position:chr5:23168666-23168868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr5:41294238-41294042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 6

               
               
               Conread position:302-494
               
               
               Cow position:chr5:43929578-43929777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):143, 16

               
               
               Conread position:302-494
               
               
               Cow position:chr5:44726177-44726365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 13

               
               
               Conread position:302-494
               
               
               Cow position:chr5:45419975-45420173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr5:56338861-56339059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-496
               
               
               Cow position:chr5:46509704-46509908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 186

               
               
               Conread position:303-494
               
               
               Cow position:chr5:67212519-67212317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):116, 41

               
               
               Conread position:304-431
               
               
               Cow position:chr5:51490444-51490572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:305-491
               
               
               Cow position:chr5:24069544-24069362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:305-493
               
               
               Cow position:chr5:63987288-63987487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:305-494
               
               
               Cow position:chr5:54767752-54767948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr5:63059218-63059030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):146, 96

               
               
               Conread position:305-494
               
               
               Cow position:chr5:64591938-64592135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:306-469
               
               
               Cow position:chr5:9233832-9233995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:308-484
               
               
               Cow position:chr5:39258656-39258483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:309-494
               
               
               Cow position:chr5:69636377-69636196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):110, 133

               
               
               Conread position:313-494
               
               
               Cow position:chr5:35982586-35982780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:315-496
               
               
               Cow position:chr5:63150021-63150209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:318-494
               
               
               Cow position:chr5:45126796-45126623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 128

               
               
               Conread position:319-441
               
               
               Cow position:chr5:37808520-37808643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:319-494
               
               
               Cow position:chr5:54375359-54375546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr5:6045434-6045252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr5:14629667-14629852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr5:56517242-56517063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):91, 73

               
               
               Conread position:326-494
               
               
               Cow position:chr5:62142812-62142635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 147

               
               
               Conread position:328-496
               
               
               Cow position:chr5:7755437-7755603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:329-494
               
               
               Cow position:chr5:45804193-45804020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:329-494
               
               
               Cow position:chr5:50821916-50821743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:329-494
               
               
               Cow position:chr5:61102849-61102675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 152

               
               
               Conread position:335-496
               
               
               Cow position:chr5:48009732-48009888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 100

               
               
               Conread position:340-494
               
               
               Cow position:chr5:65588821-65588662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 0
Show alignments to all cow chromosomes.
Conread position:	197-442
Cow position:	chr5:40241998-40241765 (view UCSC Genome Browser custom track)
Alignm length:	247
Alignm identity:	176
Alignm E-value:	9e-30
Alignm gaps (pig, cow):	219, 44
Conread position:	208-409
Cow position:	chr5:49207076-49207274 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	159
Alignm E-value:	9.99967e-42
Alignm gaps (pig, cow):	5, 33
Conread position:	208-446
Cow position:	chr5:43858165-43858405 (view UCSC Genome Browser custom track)
Alignm length:	243
Alignm identity:	183
Alignm E-value:	9.94922e-44
Alignm gaps (pig, cow):	110, 8
Conread position:	209-427
Cow position:	chr5:19972553-19972773 (view UCSC Genome Browser custom track)
Alignm length:	225
Alignm identity:	157
Alignm E-value:	5e-24
Alignm gaps (pig, cow):	27, 75
Conread position:	214-442
Cow position:	chr5:52138191-52137954 (view UCSC Genome Browser custom track)
Alignm length:	242
Alignm identity:	173
Alignm E-value:	6e-26
Alignm gaps (pig, cow):	31, 8
Conread position:	215-494
Cow position:	chr5:25035007-25035282 (view UCSC Genome Browser custom track)
Alignm length:	287
Alignm identity:	221
Alignm E-value:	0
Alignm gaps (pig, cow):	22, 7
Conread position:	218-494
Cow position:	chr5:65941005-65941291 (view UCSC Genome Browser custom track)
Alignm length:	288
Alignm identity:	221
Alignm E-value:	0
Alignm gaps (pig, cow):	7, 125
Conread position:	219-412
Cow position:	chr5:29895413-29895221 (view UCSC Genome Browser custom track)
Alignm length:	194
Alignm identity:	150
Alignm E-value:	3e-40
Alignm gaps (pig, cow):	22, 0
Conread position:	219-467
Cow position:	chr5:18062064-18062323 (view UCSC Genome Browser custom track)
Alignm length:	262
Alignm identity:	192
Alignm E-value:	2e-38
Alignm gaps (pig, cow):	23, 238
Conread position:	219-493
Cow position:	chr5:56071099-56070818 (view UCSC Genome Browser custom track)
Alignm length:	286
Alignm identity:	214
Alignm E-value:	0
Alignm gaps (pig, cow):	112, 22
Conread position:	220-386
Cow position:	chr5:71387442-71387283 (view UCSC Genome Browser custom track)
Alignm length:	168
Alignm identity:	132
Alignm E-value:	3e-30
Alignm gaps (pig, cow):	15, 87
Conread position:	220-399
Cow position:	chr5:5030682-5030506 (view UCSC Genome Browser custom track)
Alignm length:	181
Alignm identity:	134
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	15, 71
Conread position:	220-417
Cow position:	chr5:53976291-53976092 (view UCSC Genome Browser custom track)
Alignm length:	201
Alignm identity:	136
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	89, 127
Conread position:	220-428
Cow position:	chr5:6876724-6876934 (view UCSC Genome Browser custom track)
Alignm length:	214
Alignm identity:	163
Alignm E-value:	7e-38
Alignm gaps (pig, cow):	101, 23
Conread position:	220-442
Cow position:	chr5:12557045-12557270 (view UCSC Genome Browser custom track)
Alignm length:	226
Alignm identity:	167
Alignm E-value:	8e-40
Alignm gaps (pig, cow):	181, 0
Conread position:	221-383
Cow position:	chr5:28660472-28660309 (view UCSC Genome Browser custom track)
Alignm length:	164
Alignm identity:	122
Alignm E-value:	7e-28
Alignm gaps (pig, cow):	97, 0
Conread position:	221-494
Cow position:	chr5:21829108-21828827 (view UCSC Genome Browser custom track)
Alignm length:	286
Alignm identity:	215
Alignm E-value:	0
Alignm gaps (pig, cow):	20, 49
Conread position:	222-392
Cow position:	chr5:47960023-47960191 (view UCSC Genome Browser custom track)
Alignm length:	172
Alignm identity:	129
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	23, 93
Conread position:	222-397
Cow position:	chr5:45436259-45436430 (view UCSC Genome Browser custom track)
Alignm length:	177
Alignm identity:	131
Alignm E-value:	6e-26
Alignm gaps (pig, cow):	11, 34
Conread position:	222-417
Cow position:	chr5:24915285-24915482 (view UCSC Genome Browser custom track)
Alignm length:	198
Alignm identity:	146
Alignm E-value:	4e-34
Alignm gaps (pig, cow):	91, 0