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Cow genome map

           
Conread name:
           
Pig2-102D19
        

               
Conread position:
               
1-462
               

               
Cow position:
               
chr1:78091581-78092031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 75
               

               
Conread position:
               
1-490
               

               
Cow position:
               
chr1:18224330-18223845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 56
               

               
Conread position:
               
1-500
               

               
Cow position:
               
chr1:9512567-9512064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 35
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chr1:99808186-99807675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 244
               

               
Conread position:
               
2-435
               

               
Cow position:
               
chr1:76851198-76850754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
2-445
               

               
Cow position:
               
chr1:61661758-61661314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 14
               

               
Conread position:
               
2-451
               

               
Cow position:
               
chr1:22728600-22729040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 12
               

               
Conread position:
               
2-483
               

               
Cow position:
               
chr1:16973303-16972821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 72
               

               
Conread position:
               
2-485
               

               
Cow position:
               
chr1:17292107-17291622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 12
               

               
Conread position:
               
2-493
               

               
Cow position:
               
chr1:97422748-97422267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 80
               

               
Conread position:
               
2-502
               

               
Cow position:
               
chr1:29915964-29916449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 19
               

               
Conread position:
               
3-504
               

               
Cow position:
               
chr1:82407011-82406508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 119
               

               
Conread position:
               
4-443
               

               
Cow position:
               
chr1:85361407-85361839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 52
               

               
Conread position:
               
4-461
               

               
Cow position:
               
chr1:13638110-13637670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 75
               

               
Conread position:
               
4-485
               

               
Cow position:
               
chr1:55203088-55202601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 312
               

               
Conread position:
               
4-492
               

               
Cow position:
               
chr1:68818261-68817772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
19, 63
               

               
Conread position:
               
7-451
               

               
Cow position:
               
chr1:61564348-61564783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 77
               

               
Conread position:
               
8-439
               

               
Cow position:
               
chr1:15311422-15311844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 77
               

               
Conread position:
               
8-439
               

               
Cow position:
               
chr1:20522123-20521715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 47
               

               
Conread position:
               
8-439
               

               
Cow position:
               
chr1:100421401-100421808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
118, 68
               

               
Conread position:
               
8-462
               

               
Cow position:
               
chr1:96478242-96478693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
178, 68
               

               
Conread position:
               
8-476
               

               
Cow position:
               
chr1:21678708-21679165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 69
               

               
Conread position:
               
8-476
               

               
Cow position:
               
chr1:44164632-44165096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 39
               

               
Conread position:
               
8-487
               

               
Cow position:
               
chr1:84255314-84255788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 71
               

               
Conread position:
               
8-492
               

               
Cow position:
               
chr1:84812394-84811914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 74
               

               
Conread position:
               
8-492
               

               
Cow position:
               
chr1:98551277-98551747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 71
               

               
Conread position:
               
8-495
               

               
Cow position:
               
chr1:3323410-3323898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 68
               

               
Conread position:
               
8-497
               

               
Cow position:
               
chr1:73522586-73522116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 144
               

               
Conread position:
               
8-502
               

               
Cow position:
               
chr1:48731280-48730793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 199
               

               
Conread position:
               
8-504
               

               
Cow position:
               
chr1:66356159-66355673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 230
               

               
Conread position:
               
8-506
               

               
Cow position:
               
chr1:6795393-6794882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 204
               

               
Conread position:
               
8-508
               

               
Cow position:
               
chr1:71045294-71045800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 240
               

               
Conread position:
               
9-428
               

               
Cow position:
               
chr1:21577369-21577774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
7, 128
               

               
Conread position:
               
9-451
               

               
Cow position:
               
chr1:63391216-63390783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
7, 68
               

               
Conread position:
               
9-486
               

               
Cow position:
               
chr1:665928-666386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 56
               

               
Conread position:
               
9-515
               

               
Cow position:
               
chr1:68619362-68618886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 67
               

               
Conread position:
               
10-446
               

               
Cow position:
               
chr1:41696619-41697041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 69
               

               
Conread position:
               
10-477
               

               
Cow position:
               
chr1:14528651-14528183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 230
               

               
Conread position:
               
10-504
               

               
Cow position:
               
chr1:20001196-20000707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 123
               

               
Conread position:
               
10-504
               

               
Cow position:
               
chr1:20098911-20099408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 118
               

               
Conread position:
               
10-508
               

               
Cow position:
               
chr1:41736054-41735574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 48
               

               
Conread position:
               
11-502
               

               
Cow position:
               
chr1:7232874-7233341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 11
               

               
Conread position:
               
11-508
               

               
Cow position:
               
chr1:61724461-61723974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 68
               

               
Conread position:
               
12-440
               

               
Cow position:
               
chr1:25119476-25119054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
25, 252
               

               
Conread position:
               
15-447
               

               
Cow position:
               
chr1:25183676-25184115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 228
               

               
Conread position:
               
15-502
               

               
Cow position:
               
chr1:28176567-28177047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 177
               

               
Conread position:
               
17-504
               

               
Cow position:
               
chr1:71135723-71136194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 181
               

               
Conread position:
               
19-446
               

               
Cow position:
               
chr1:101008039-101007637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
182, 57
               

               
Conread position:
               
24-487
               

               
Cow position:
               
chr1:80974056-80973582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 58
               

               
Conread position:
               
24-505
               

               
Cow position:
               
chr1:28678080-28678565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 25
               

               
Conread position:
               
29-487
               

               
Cow position:
               
chr1:81161589-81162023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 207
               

               
Conread position:
               
40-502
               

               
Cow position:
               
chr1:91817190-91816732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
54-510
               

               
Cow position:
               
chr1:81913557-81913109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 184
               

               
Conread position:
               
59-503
               

               
Cow position:
               
chr1:10719889-10719438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 28
               

               
Conread position:
               
67-447
               

               
Cow position:
               
chr1:7800223-7800597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 80
               

               
Conread position:
               
70-505
               

               
Cow position:
               
chr1:94526107-94526539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 104
               

               
Conread position:
               
71-487
               

               
Cow position:
               
chr1:50634798-50634382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 98
               

               
Conread position:
               
77-491
               

               
Cow position:
               
chr1:61392174-61391758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 171
               

               
Conread position:
               
77-508
               

               
Cow position:
               
chr1:3657747-3657320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 110
               

               
Conread position:
               
78-495
               

               
Cow position:
               
chr1:9870233-9869820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 88
               

               
Conread position:
               
82-497
               

               
Cow position:
               
chr1:9444218-9443815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 121
               

               
Conread position:
               
84-507
               

               
Cow position:
               
chr1:7657693-7657269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 103
               

               
Conread position:
               
85-502
               

               
Cow position:
               
chr1:69695381-69694954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
10, 105
               

               
Conread position:
               
94-445
               

               
Cow position:
               
chr1:1877665-1878012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 14
               

               
Conread position:
               
97-448
               

               
Cow position:
               
chr1:78751063-78750703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 222
               

               
Conread position:
               
98-506
               

               
Cow position:
               
chr1:80764912-80764492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 158
               

               
Conread position:
               
109-504
               

               
Cow position:
               
chr1:63503992-63504375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 126
               

               
Conread position:
               
111-502
               

               
Cow position:
               
chr1:48444525-48444155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
147, 90
               

               
Conread position:
               
113-507
               

               
Cow position:
               
chr1:77462021-77462407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
88, 53
               

               
Conread position:
               
116-483
               

               
Cow position:
               
chr1:19440356-19440000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 77
               

               
Conread position:
               
118-440
               

               
Cow position:
               
chr1:95215516-95215205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 42
               

               
Conread position:
               
137-502
               

               
Cow position:
               
chr1:85596625-85596977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
64, 84
               

               
Conread position:
               
140-499
               

               
Cow position:
               
chr1:86614535-86614895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
86, 62
               

               
Conread position:
               
143-445
               

               
Cow position:
               
chr1:49839207-49839487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
116, 58
               

               
Conread position:
               
145-506
               

               
Cow position:
               
chr1:21934492-21934130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 24
               

               
Conread position:
               
147-504
               

               
Cow position:
               
chr1:26688790-26688430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 46
               

               
Conread position:
               
149-502
               

               
Cow position:
               
chr1:63435112-63434767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
51, 87
               

               
Conread position:
               
151-502
               

               
Cow position:
               
chr1:22448891-22448542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
50, 91
               

               
Conread position:
               
157-445
               

               
Cow position:
               
chr1:31845734-31846008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 84
               

               
Conread position:
               
158-498
               

               
Cow position:
               
chr1:35170037-35170373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 77
               

               
Conread position:
               
166-437
               

               
Cow position:
               
chr1:3752235-3751965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
168-446
               

               
Cow position:
               
chr1:81472589-81472856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 73
               

               
Conread position:
               
169-502
               

               
Cow position:
               
chr1:1991719-1991380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
32, 167
               

               
Conread position:
               
169-506
               

               
Cow position:
               
chr1:77132315-77132653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
176-451
               

               
Cow position:
               
chr1:60907079-60907361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
177-498
               

               
Cow position:
               
chr1:32341488-32341173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
191-455
               

               
Cow position:
               
chr1:77657802-77658059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
67, 43
               

               
Conread position:
               
191-502
               

               
Cow position:
               
chr1:86325875-86325566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
67, 43
               

               
Conread position:
               
194-427
               

               
Cow position:
               
chr1:20799606-20799849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
7, 142
               

               
Conread position:
               
197-493
               

               
Cow position:
               
chr1:56643847-56643558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
198-506
               

               
Cow position:
               
chr1:8869922-8869616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
199-458
               

               
Cow position:
               
chr1:81563477-81563731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
200-428
               

               
Cow position:
               
chr1:90864555-90864328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
200-470
               

               
Cow position:
               
chr1:97620095-97619827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
200-483
               

               
Cow position:
               
chr1:64480231-64479957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
68, 20
               

               
Conread position:
               
200-502
               

               
Cow position:
               
chr1:34856884-34856589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
200-506
               

               
Cow position:
               
chr1:30413330-30413634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 34
               

               
Conread position:
               
200-508
               

               
Cow position:
               
chr1:53039954-53039656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
200-509
               

               
Cow position:
               
chr1:68827160-68826858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
201-467
               

               
Cow position:
               
chr1:28567692-28567428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 34
               

               
Conread position:
               
201-503
               

               
Cow position:
               
chr1:22777805-22777503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 33
               

               
Conread position:
               
201-503
               

               
Cow position:
               
chr1:23099643-23099943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
201-506
               

               
Cow position:
               
chr1:49131376-49131068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 37
               

               
Conread position:
               
201-506
               

               
Cow position:
               
chr1:90423340-90423039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
204-506
               

               
Cow position:
               
chr1:29975848-29975556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
205-430
               

               
Cow position:
               
chr1:4385098-4385328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
205-445
               

               
Cow position:
               
chr1:6881475-6881244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
205-452
               

               
Cow position:
               
chr1:20422457-20422216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
205-481
               

               
Cow position:
               
chr1:82370501-82370759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
205-498
               

               
Cow position:
               
chr1:74084439-74084153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
205-503
               

               
Cow position:
               
chr1:36931909-36932194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
205-503
               

               
Cow position:
               
chr1:37707219-37706930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
205-504
               

               
Cow position:
               
chr1:78791557-78791263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
205-505
               

               
Cow position:
               
chr1:31871170-31871467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
205-506
               

               
Cow position:
               
chr1:74947367-74947074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 29
               

               
Conread position:
               
205-508
               

               
Cow position:
               
chr1:7143099-7142805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
205-508
               

               
Cow position:
               
chr1:46839344-46839650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
206-474
               

               
Cow position:
               
chr1:25793689-25793423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
206-506
               

               
Cow position:
               
chr1:85411330-85411620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
207-438
               

               
Cow position:
               
chr1:102313110-102312890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
207-495
               

               
Cow position:
               
chr1:5162301-5162014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
207-499
               

               
Cow position:
               
chr1:33986765-33986474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
207-506
               

               
Cow position:
               
chr1:32244647-32244356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 27
               

               
Conread position:
               
207-506
               

               
Cow position:
               
chr1:70534182-70533894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
207-507
               

               
Cow position:
               
chr1:95765337-95765048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
209-447
               

               
Cow position:
               
chr1:63905720-63905489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
209-476
               

               
Cow position:
               
chr1:56408367-56408629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
209-485
               

               
Cow position:
               
chr1:56748344-56748620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
209-502
               

               
Cow position:
               
chr1:93110871-93110577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 93
               

               
Conread position:
               
209-503
               

               
Cow position:
               
chr1:59650020-59650310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
53, 23
               

               
Conread position:
               
209-506
               

               
Cow position:
               
chr1:2765171-2765457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
211-460
               

               
Cow position:
               
chr1:20287873-20288117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
227, 28
               

               
Conread position:
               
212-459
               

               
Cow position:
               
chr1:71119268-71119512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
212-514
               

               
Cow position:
               
chr1:56634853-56635144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
46, 110
               

               
Conread position:
               
215-445
               

               
Cow position:
               
chr1:94403976-94404194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
215-506
               

               
Cow position:
               
chr1:62732335-62732616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
216-427
               

               
Cow position:
               
chr1:70236532-70236324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
216-454
               

               
Cow position:
               
chr1:51836332-51836561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
217-437
               

               
Cow position:
               
chr1:24597414-24597631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
217-447
               

               
Cow position:
               
chr1:51769847-51770072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
217-506
               

               
Cow position:
               
chr1:64189264-64189544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
217-508
               

               
Cow position:
               
chr1:76096201-76096484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
219-514
               

               
Cow position:
               
chr1:65664824-65665104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
220-506
               

               
Cow position:
               
chr1:92642676-92642405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
137, 14
               

               
Conread position:
               
223-503
               

               
Cow position:
               
chr1:92010080-92010349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
224-503
               

               
Cow position:
               
chr1:54163043-54162764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
35, 62
               

               
Conread position:
               
224-503
               

               
Cow position:
               
chr1:69415950-69415669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
226-500
               

               
Cow position:
               
chr1:98790406-98790672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
227-502
               

               
Cow position:
               
chr1:43448053-43447790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
227-510
               

               
Cow position:
               
chr1:15691106-15691382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 80
               

               
Conread position:
               
228-503
               

               
Cow position:
               
chr1:25886304-25886035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
228-504
               

               
Cow position:
               
chr1:79278671-79278405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 40
               

               
Conread position:
               
228-515
               

               
Cow position:
               
chr1:101812504-101812221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 32
               

               
Conread position:
               
230-451
               

               
Cow position:
               
chr1:22910146-22910359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
230-504
               

               
Cow position:
               
chr1:73196469-73196190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
6, 107
               

               
Conread position:
               
230-508
               

               
Cow position:
               
chr1:77118754-77118487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
29, 35
               

               
Conread position:
               
235-467
               

               
Cow position:
               
chr1:5061799-5062030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
238-446
               

               
Cow position:
               
chr1:97785964-97786163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 60
               

               
Conread position:
               
238-451
               

               
Cow position:
               
chr1:15333661-15333872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
133, 15
               

               
Conread position:
               
239-446
               

               
Cow position:
               
chr1:64939161-64938958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
242-485
               

               
Cow position:
               
chr1:84015656-84015898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
18, 86
               

               
Conread position:
               
248-502
               

               
Cow position:
               
chr1:95654925-95654674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
10, 80
               

               
Conread position:
               
251-498
               

               
Cow position:
               
chr1:58825343-58825580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
196, 54
               

               
Conread position:
               
254-499
               

               
Cow position:
               
chr1:89547987-89548229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 57
               

               
Conread position:
               
259-451
               

               
Cow position:
               
chr1:43872532-43872340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
180, 68
               

               
Conread position:
               
259-498
               

               
Cow position:
               
chr1:765770-765529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
128, 68
               

               
Conread position:
               
259-499
               

               
Cow position:
               
chr1:64421133-64421365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
204, 68
               

               
Conread position:
               
263-506
               

               
Cow position:
               
chr1:89443670-89443435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
180, 44
               

               
Conread position:
               
264-441
               

               
Cow position:
               
chr1:83594000-83593823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
102, 28
               

               
Conread position:
               
265-499
               

               
Cow position:
               
chr1:69004201-69004434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
269-506
               

               
Cow position:
               
chr1:20581761-20581987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
183, 49
               

               
Conread position:
               
271-498
               

               
Cow position:
               
chr1:84235516-84235296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
105, 28
               

               
Conread position:
               
277-499
               

               
Cow position:
               
chr1:42174768-42174552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
193, 29
               

               
Conread position:
               
280-445
               

               
Cow position:
               
chr1:60532366-60532528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
158, 47
               

               
Conread position:
               
280-454
               

               
Cow position:
               
chr1:45638307-45638478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
280-498
               

               
Cow position:
               
chr1:13195601-13195391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
281-508
               

               
Cow position:
               
chr1:5278592-5278369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
282-506
               

               
Cow position:
               
chr1:8192904-8192690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
100, 25
               

               
Conread position:
               
285-505
               

               
Cow position:
               
chr1:50345371-50345588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
165, 42
               

               
Conread position:
               
287-504
               

               
Cow position:
               
chr1:20544122-20544338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
158, 42
               

               
Conread position:
               
287-506
               

               
Cow position:
               
chr1:57782840-57783047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
156, 20
               

               
Conread position:
               
288-497
               

               
Cow position:
               
chr1:38525418-38525624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
175, 39
               

               
Conread position:
               
290-506
               

               
Cow position:
               
chr1:39025868-39026081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
162, 37
               

               
Conread position:
               
291-508
               

               
Cow position:
               
chr1:75347451-75347670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
179, 38
               

               
Conread position:
               
294-502
               

               
Cow position:
               
chr1:43703242-43703448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
169, 13
               

               
Conread position:
               
304-447
               

               
Cow position:
               
chr1:52449764-52449622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
137, 23
               

               
Conread position:
               
305-504
               

               
Cow position:
               
chr1:101771753-101771942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
309-461
               

               
Cow position:
               
chr1:46205666-46205815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
311-502
               

               
Cow position:
               
chr1:85596200-85596004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
314-506
               

               
Cow position:
               
chr1:29657681-29657864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
314-506
               

               
Cow position:
               
chr1:38692517-38692710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
170, 13
               

               
Conread position:
               
326-503
               

               
Cow position:
               
chr1:70389300-70389470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 18
               

               
Conread position:
               
326-508
               

               
Cow position:
               
chr1:72731903-72732086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
121, 18
               

               
Conread position:
               
328-487
               

               
Cow position:
               
chr1:22388073-22387922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
330-462
               

               
Cow position:
               
chr1:25610607-25610479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
330-506
               

               
Cow position:
               
chr1:44746734-44746906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
157, 18
               

               
Conread position:
               
339-506
               

               
Cow position:
               
chr1:73653762-73653599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
122, 21
               

               
Conread position:
               
346-508
               

               
Cow position:
               
chr1:28944400-28944557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 108
               

               
Conread position:
               
372-506
               

               
Cow position:
               
chr1:48083633-48083772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
375-503
               

               
Cow position:
               
chr1:30066529-30066659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
36, 41
               
Show alignments to all cow chromosomes.