Cow genome map
| Conread name: | Pig2-102D19 |
| Conread position: | 2-506 |
| Cow position: | chr12:27055108-27055605 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 12 |
| Conread position: | 4-477 |
| Cow position: | chr12:21828575-21829054 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 243 |
| Conread position: | 4-504 |
| Cow position: | chr12:25606199-25606702 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 144 |
| Conread position: | 5-439 |
| Cow position: | chr12:794029-794490 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 253 |
| Conread position: | 7-498 |
| Cow position: | chr12:20312649-20312179 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 8-433 |
| Cow position: | chr12:26869280-26868869 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 45 |
| Conread position: | 8-435 |
| Cow position: | chr12:24440323-24440745 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 69 |
| Conread position: | 8-438 |
| Cow position: | chr12:3211827-3212258 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 82 |
| Conread position: | 8-440 |
| Cow position: | chr12:36568536-36568128 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 189, 70 |
| Conread position: | 8-441 |
| Cow position: | chr12:5658587-5658136 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 315 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 98, 71 |
| Conread position: | 8-449 |
| Cow position: | chr12:24755513-24755092 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 68 |
| Conread position: | 8-492 |
| Cow position: | chr12:22047004-22047453 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 32 |
| Conread position: | 8-504 |
| Cow position: | chr12:31430055-31429574 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 197 |
| Conread position: | 12-446 |
| Cow position: | chr12:19040102-19039671 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 67 |
| Conread position: | 18-504 |
| Cow position: | chr12:16544065-16543584 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 345 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 51, 128 |
| Conread position: | 26-514 |
| Cow position: | chr12:1890065-1889576 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 289 |
| Conread position: | 35-507 |
| Cow position: | chr12:24558869-24559358 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 218 |
| Conread position: | 42-506 |
| Cow position: | chr12:47800273-47799824 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 177 |
| Conread position: | 54-505 |
| Cow position: | chr12:1223779-1223346 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 89 |
| Conread position: | 57-499 |
| Cow position: | chr12:25312823-25312376 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 172 |
| Conread position: | 67-516 |
| Cow position: | chr12:45541304-45541744 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 297 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 191, 101 |
| Conread position: | 71-503 |
| Cow position: | chr12:8869323-8868879 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 153 |
| Conread position: | 76-501 |
| Cow position: | chr12:42254233-42254661 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 292 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 10, 117 |
| Conread position: | 77-502 |
| Cow position: | chr12:34385926-34385512 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 124, 83 |
| Conread position: | 78-495 |
| Cow position: | chr12:44596239-44595824 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 278 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 124, 161 |
| Conread position: | 79-427 |
| Cow position: | chr12:40158660-40158319 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 109 |
| Conread position: | 85-454 |
| Cow position: | chr12:35807266-35807627 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 75 |
| Conread position: | 86-499 |
| Cow position: | chr12:1774079-1773678 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 23 |
| Conread position: | 94-502 |
| Cow position: | chr12:30753317-30753715 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 94, 147 |
| Conread position: | 101-506 |
| Cow position: | chr12:30596064-30596466 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 133 |
| Conread position: | 105-485 |
| Cow position: | chr12:31959496-31959861 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 96, 51 |
| Conread position: | 108-501 |
| Cow position: | chr12:30437856-30438234 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 93, 129 |
| Conread position: | 124-515 |
| Cow position: | chr12:27039142-27038749 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 95 |
| Conread position: | 138-504 |
| Cow position: | chr12:33323863-33323499 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 99 |
| Conread position: | 149-439 |
| Cow position: | chr12:41979653-41979367 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 90 |
| Conread position: | 156-451 |
| Cow position: | chr12:2812880-2813168 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 156-501 |
| Cow position: | chr12:9710552-9710214 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 86 |
| Conread position: | 160-516 |
| Cow position: | chr12:16851351-16850998 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 183-503 |
| Cow position: | chr12:44622037-44622351 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 191-502 |
| Cow position: | chr12:24107857-24107550 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 200-439 |
| Cow position: | chr12:15622756-15622514 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 200-440 |
| Cow position: | chr12:37994025-37993791 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 200-487 |
| Cow position: | chr12:3757337-3757064 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 45, 95 |
| Conread position: | 200-504 |
| Cow position: | chr12:31198468-31198764 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 185, 36 |
| Conread position: | 200-504 |
| Cow position: | chr12:33457848-33458144 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 201-477 |
| Cow position: | chr12:34103433-34103164 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 201-503 |
| Cow position: | chr12:30688039-30688337 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 33 |
| Conread position: | 204-434 |
| Cow position: | chr12:34007003-34007231 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 205-439 |
| Cow position: | chr12:40270381-40270161 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 205-497 |
| Cow position: | chr12:25619672-25619381 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 205-502 |
| Cow position: | chr12:9914494-9914784 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 205-503 |
| Cow position: | chr12:30805560-30805849 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 205-506 |
| Cow position: | chr12:18769371-18769070 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 206-449 |
| Cow position: | chr12:28650663-28650896 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 207-486 |
| Cow position: | chr12:6164322-6164046 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 214-467 |
| Cow position: | chr12:18417277-18417529 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 32 |
| Conread position: | 217-508 |
| Cow position: | chr12:29448360-29448647 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 218-476 |
| Cow position: | chr12:44439133-44438889 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 226-486 |
| Cow position: | chr12:34089556-34089820 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 32, 106 |
| Conread position: | 226-493 |
| Cow position: | chr12:48405854-48406101 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 227-439 |
| Cow position: | chr12:35354509-35354718 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 17, 102 |
| Conread position: | 235-461 |
| Cow position: | chr12:17702500-17702276 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 93 |
| Conread position: | 235-498 |
| Cow position: | chr12:28559028-28559290 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 237-431 |
| Cow position: | chr12:42283102-42282910 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 238-506 |
| Cow position: | chr12:38484664-38484393 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 239-434 |
| Cow position: | chr12:3994686-3994882 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 242-506 |
| Cow position: | chr12:44743230-44743493 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 123, 87 |
| Conread position: | 245-497 |
| Cow position: | chr12:27938657-27938910 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 248-508 |
| Cow position: | chr12:30064690-30064937 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 65 |
| Conread position: | 259-504 |
| Cow position: | chr12:40028997-40028757 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 106, 52 |
| Conread position: | 265-504 |
| Cow position: | chr12:1030745-1030977 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 198, 10 |
| Conread position: | 275-453 |
| Cow position: | chr12:6117674-6117848 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 176, 34 |
| Conread position: | 276-502 |
| Cow position: | chr12:3906242-3906468 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 52 |
| Conread position: | 277-441 |
| Cow position: | chr12:21862008-21861852 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 110, 28 |
| Conread position: | 280-439 |
| Cow position: | chr12:35984910-35985069 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 76, 47 |
| Conread position: | 280-475 |
| Cow position: | chr12:37394484-37394681 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 97, 27 |
| Conread position: | 282-503 |
| Cow position: | chr12:32221441-32221661 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 123, 25 |
| Conread position: | 283-440 |
| Cow position: | chr12:27495787-27495943 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 104, 44 |
| Conread position: | 296-451 |
| Cow position: | chr12:11696466-11696623 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 296-487 |
| Cow position: | chr12:36544858-36544666 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 346-502 |
| Cow position: | chr12:15230976-15230820 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 132, 11 |
Show alignments to all cow chromosomes.