Cow genome map

Conread name: Pig2-102D19

Conread position: 1-482
Cow position: chr20:14832039-14831559 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 20

Conread position: 2-440
Cow position: chr20:22446051-22445624 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 77

Conread position: 2-442
Cow position: chr20:13048833-13048396 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 14

Conread position: 2-444
Cow position: chr20:5077782-5078218 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 64

Conread position: 2-444
Cow position: chr20:23792189-23792626 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 14

Conread position: 2-446
Cow position: chr20:38028413-38027992 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 12

Conread position: 2-481
Cow position: chr20:13955627-13956099 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 19

Conread position: 2-487
Cow position: chr20:19352180-19351699 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 14

Conread position: 2-498
Cow position: chr20:4621750-4621271 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 31

Conread position: 2-506
Cow position: chr20:26881344-26880831 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 14

Conread position: 2-514
Cow position: chr20:26076669-26077165 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 14

Conread position: 8-440
Cow position: chr20:5104842-5104428 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 298
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 193, 69

Conread position: 8-486
Cow position: chr20:25686750-25686291 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 119

Conread position: 8-502
Cow position: chr20:19146461-19146953 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 8-502
Cow position: chr20:39415333-39415826 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 156

Conread position: 8-503
Cow position: chr20:9536729-9537216 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 69

Conread position: 8-503
Cow position: chr20:13821996-13821501 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 228

Conread position: 9-437
Cow position: chr20:17734184-17733764 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 76

Conread position: 9-447
Cow position: chr20:10468668-10469088 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 428, 68

Conread position: 9-452
Cow position: chr20:42137978-42138401 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 74

Conread position: 9-502
Cow position: chr20:9474020-9473538 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 68

Conread position: 9-503
Cow position: chr20:21019159-21019644 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 73

Conread position: 10-503
Cow position: chr20:27978143-27977626 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 248

Conread position: 10-514
Cow position: chr20:14806480-14806970 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 50

Conread position: 14-461
Cow position: chr20:24391592-24392010 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 103

Conread position: 16-502
Cow position: chr20:6423568-6424047 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 323
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 22, 50

Conread position: 19-451
Cow position: chr20:18413457-18413879 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 14

Conread position: 22-450
Cow position: chr20:18321189-18320768 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 57

Conread position: 30-445
Cow position: chr20:31747009-31746609 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 285
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 171, 49

Conread position: 31-451
Cow position: chr20:33176815-33177215 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 290
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 227, 48

Conread position: 40-508
Cow position: chr20:38123502-38123970 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 94

Conread position: 44-461
Cow position: chr20:6045773-6045397 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 298
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 157, 87

Conread position: 55-445
Cow position: chr20:32636941-32636551 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 276
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 87, 29

Conread position: 58-504
Cow position: chr20:5576400-5576854 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 6

Conread position: 58-515
Cow position: chr20:8556629-8556185 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 304
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 67, 7

Conread position: 65-499
Cow position: chr20:33144910-33144485 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 136

Conread position: 91-441
Cow position: chr20:15577222-15576873 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 96

Conread position: 98-501
Cow position: chr20:33435486-33435089 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 92

Conread position: 103-502
Cow position: chr20:17251392-17251793 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 133

Conread position: 106-440
Cow position: chr20:19328086-19328413 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 94, 68

Conread position: 111-514
Cow position: chr20:21345091-21345516 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 283
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 78, 130

Conread position: 127-501
Cow position: chr20:6240824-6240449 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 110

Conread position: 139-502
Cow position: chr20:12582231-12581878 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 250
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 14, 99

Conread position: 142-361
Cow position: chr20:39043493-39043274 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 152
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 71, 101

Conread position: 144-498
Cow position: chr20:14679344-14679695 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 50

Conread position: 155-501
Cow position: chr20:7659476-7659151 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 46, 66

Conread position: 182-498
Cow position: chr20:4204059-4204362 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 19

Conread position: 185-508
Cow position: chr20:21016243-21016565 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 222
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 16, 38

Conread position: 191-508
Cow position: chr20:20360000-20359700 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 10, 32

Conread position: 200-439
Cow position: chr20:41500762-41500526 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 58, 34

Conread position: 200-445
Cow position: chr20:26996315-26996552 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 58, 32

Conread position: 201-475
Cow position: chr20:6848404-6848677 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 57, 33

Conread position: 201-506
Cow position: chr20:25823066-25823358 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 41

Conread position: 202-495
Cow position: chr20:22704071-22704362 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 56, 32

Conread position: 204-506
Cow position: chr20:19265942-19266234 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 30

Conread position: 205-433
Cow position: chr20:4359868-4359654 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 8, 30

Conread position: 205-439
Cow position: chr20:14735463-14735688 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 53, 29

Conread position: 205-506
Cow position: chr20:17669968-17670264 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 29

Conread position: 205-510
Cow position: chr20:220404-220694 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 227
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 53, 30

Conread position: 205-515
Cow position: chr20:28296076-28296378 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 211
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 53, 29

Conread position: 206-502
Cow position: chr20:21928685-21928981 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 211
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 48

Conread position: 206-506
Cow position: chr20:20471577-20471865 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 31

Conread position: 207-502
Cow position: chr20:7442336-7442056 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 207
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 39, 27

Conread position: 207-504
Cow position: chr20:40511969-40511678 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 51, 27

Conread position: 207-506
Cow position: chr20:32862204-32861915 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 51, 27

Conread position: 208-449
Cow position: chr20:23505618-23505849 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 53, 26

Conread position: 208-506
Cow position: chr20:10759676-10759392 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 50, 26

Conread position: 209-503
Cow position: chr20:19238641-19238349 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 25

Conread position: 209-508
Cow position: chr20:35897308-35897604 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 222
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 52, 24

Conread position: 212-459
Cow position: chr20:12041354-12041117 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 22

Conread position: 213-486
Cow position: chr20:15593090-15593355 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 44, 21

Conread position: 215-506
Cow position: chr20:27001190-27001467 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 43, 17

Conread position: 215-507
Cow position: chr20:24869232-24868950 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 23

Conread position: 218-508
Cow position: chr20:15074033-15073754 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 40, 16

Conread position: 222-508
Cow position: chr20:25274479-25274206 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 213
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 20, 107

Conread position: 226-455
Cow position: chr20:14471744-14471517 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 50

Conread position: 230-485
Cow position: chr20:25293403-25293652 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 28, 78

Conread position: 231-422
Cow position: chr20:31001840-31002031 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 26, 8

Conread position: 237-480
Cow position: chr20:614482-614722 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 174
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 9

Conread position: 249-506
Cow position: chr20:3321310-3321054 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 57

Conread position: 253-440
Cow position: chr20:5814403-5814581 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 255-506
Cow position: chr20:15312494-15312750 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 122, 89

Conread position: 258-462
Cow position: chr20:283091-282894 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 263-450
Cow position: chr20:18837318-18837134 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 46, 65

Conread position: 274-502
Cow position: chr20:22484715-22484935 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 109, 11

Conread position: 280-498
Cow position: chr20:24234020-24234231 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 170
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 59, 31

Conread position: 280-506
Cow position: chr20:8261767-8261996 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 185
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 69, 47

Conread position: 282-501
Cow position: chr20:40446191-40446404 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 97, 23

Conread position: 282-503
Cow position: chr20:16585776-16585553 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 77, 45

Conread position: 283-499
Cow position: chr20:34178614-34178399 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 132, 39

Conread position: 285-446
Cow position: chr20:39247774-39247930 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 285-474
Cow position: chr20:11355078-11355265 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 20, 45

Conread position: 294-485
Cow position: chr20:26084110-26083921 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 13, 34

Conread position: 301-471
Cow position: chr20:37609108-37609275 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 151, 26

Conread position: 306-498
Cow position: chr20:23234917-23235107 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 177, 23

Conread position: 311-487
Cow position: chr20:19339986-19339816 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 315-445
Cow position: chr20:39056151-39056023 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 330-507
Cow position: chr20:26315685-26315518 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 122, 17

Conread position: 331-469
Cow position: chr20:15917888-15918026 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 70, 13

Conread position: 346-467
Cow position: chr20:23604990-23604871 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 101, 22

Conread position: 352-505
Cow position: chr20:2802166-2802015 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 91, 33

Conread position: 353-467
Cow position: chr20:7062308-7062422 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 38

Show alignments to all cow chromosomes.