Cow genome map
| Conread name: | Pig2-102D19 |
| Conread position: | 1-497 |
| Cow position: | chr27:20765535-20766032 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 21 |
| Conread position: | 2-446 |
| Cow position: | chr27:30677331-30676889 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 12 |
| Conread position: | 2-459 |
| Cow position: | chr27:27867267-27867723 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 19 |
| Conread position: | 3-473 |
| Cow position: | chr27:26595848-26595374 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 94, 18 |
| Conread position: | 3-498 |
| Cow position: | chr27:4664889-4664405 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 98 |
| Conread position: | 7-439 |
| Cow position: | chr27:23454742-23455168 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 71 |
| Conread position: | 8-445 |
| Cow position: | chr27:30561334-30560895 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 238 |
| Conread position: | 8-502 |
| Cow position: | chr27:17473227-17472731 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 39 |
| Conread position: | 8-502 |
| Cow position: | chr27:22418360-22418843 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 70 |
| Conread position: | 8-504 |
| Cow position: | chr27:8430014-8430517 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 238 |
| Conread position: | 8-504 |
| Cow position: | chr27:15319856-15319377 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 63 |
| Conread position: | 8-508 |
| Cow position: | chr27:27737522-27738010 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 93 |
| Conread position: | 9-502 |
| Cow position: | chr27:21350608-21351099 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 47 |
| Conread position: | 9-502 |
| Cow position: | chr27:24999330-24999817 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 68 |
| Conread position: | 9-505 |
| Cow position: | chr27:6454627-6454128 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 216 |
| Conread position: | 10-450 |
| Cow position: | chr27:4673420-4672994 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 69 |
| Conread position: | 10-473 |
| Cow position: | chr27:22330248-22330718 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 286 |
| Conread position: | 15-451 |
| Cow position: | chr27:28276668-28276254 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 417, 40 |
| Conread position: | 16-439 |
| Cow position: | chr27:30702684-30703088 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 112 |
| Conread position: | 28-504 |
| Cow position: | chr27:26300228-26299763 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 145 |
| Conread position: | 31-458 |
| Cow position: | chr27:12231527-12231944 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 40 |
| Conread position: | 35-485 |
| Cow position: | chr27:30519047-30518622 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 308 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 72, 125 |
| Conread position: | 65-506 |
| Cow position: | chr27:26161861-26161420 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 165 |
| Conread position: | 76-461 |
| Cow position: | chr27:23632941-23632564 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 267 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 131, 66 |
| Conread position: | 77-434 |
| Cow position: | chr27:27683771-27684128 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 124, 55 |
| Conread position: | 77-450 |
| Cow position: | chr27:26427785-26428154 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 7 |
| Conread position: | 78-502 |
| Cow position: | chr27:11535754-11536182 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 35, 111 |
| Conread position: | 85-451 |
| Cow position: | chr27:6620485-6620119 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 155 |
| Conread position: | 91-439 |
| Cow position: | chr27:22171629-22171286 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 94-514 |
| Cow position: | chr27:30868413-30868824 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 149 |
| Conread position: | 103-486 |
| Cow position: | chr27:18544316-18543934 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 98, 145 |
| Conread position: | 142-498 |
| Cow position: | chr27:21139104-21138754 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 147-494 |
| Cow position: | chr27:19589749-19589410 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 111, 54 |
| Conread position: | 169-447 |
| Cow position: | chr27:28921647-28921917 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 170-434 |
| Cow position: | chr27:28518536-28518287 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 174-443 |
| Cow position: | chr27:11081443-11081178 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 174-450 |
| Cow position: | chr27:23483472-23483202 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 176-498 |
| Cow position: | chr27:26492455-26492775 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 61 |
| Conread position: | 179-502 |
| Cow position: | chr27:10980106-10979786 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 184-497 |
| Cow position: | chr27:26440821-26441125 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 187-508 |
| Cow position: | chr27:13006068-13005764 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 191-504 |
| Cow position: | chr27:27053524-27053215 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 43 |
| Conread position: | 197-502 |
| Cow position: | chr27:29038719-29039018 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 200-502 |
| Cow position: | chr27:2592759-2592466 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 204-403 |
| Cow position: | chr27:7495471-7495270 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 55, 29 |
| Conread position: | 204-461 |
| Cow position: | chr27:4812663-4812915 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 205-431 |
| Cow position: | chr27:29019533-29019757 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 123 |
| Conread position: | 205-488 |
| Cow position: | chr27:19637847-19637577 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 238, 33 |
| Conread position: | 205-501 |
| Cow position: | chr27:794995-794718 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 205-505 |
| Cow position: | chr27:25998918-25998622 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 205-506 |
| Cow position: | chr27:8048526-8048817 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 29 |
| Conread position: | 205-506 |
| Cow position: | chr27:11416656-11416371 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 205-506 |
| Cow position: | chr27:25471357-25471058 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 125 |
| Conread position: | 206-391 |
| Cow position: | chr27:20544162-20543970 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 52, 28 |
| Conread position: | 207-451 |
| Cow position: | chr27:1183665-1183900 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 207-495 |
| Cow position: | chr27:30765243-30764963 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 207-496 |
| Cow position: | chr27:6523257-6522973 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 207-504 |
| Cow position: | chr27:19543698-19543999 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 212-504 |
| Cow position: | chr27:19647738-19648021 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 213-503 |
| Cow position: | chr27:20354785-20354512 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 215-428 |
| Cow position: | chr27:11762536-11762736 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 215-501 |
| Cow position: | chr27:19546301-19546586 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 216-435 |
| Cow position: | chr27:1141833-1142038 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 223-450 |
| Cow position: | chr27:20592181-20591957 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 228-462 |
| Cow position: | chr27:23659148-23659372 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 229-457 |
| Cow position: | chr27:6037314-6037091 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 230-506 |
| Cow position: | chr27:14937238-14937511 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 235-431 |
| Cow position: | chr27:6038776-6038591 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 246-495 |
| Cow position: | chr27:9169470-9169714 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 247-508 |
| Cow position: | chr27:6160155-6159897 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 251-502 |
| Cow position: | chr27:8168258-8168507 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 44 |
| Conread position: | 260-507 |
| Cow position: | chr27:23600424-23600190 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 98, 38 |
| Conread position: | 267-449 |
| Cow position: | chr27:10086529-10086707 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 173, 39 |
| Conread position: | 267-462 |
| Cow position: | chr27:465114-464919 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 115, 60 |
| Conread position: | 267-488 |
| Cow position: | chr27:19601529-19601318 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 195, 40 |
| Conread position: | 270-506 |
| Cow position: | chr27:12243986-12244207 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 200, 48 |
| Conread position: | 272-485 |
| Cow position: | chr27:29679175-29679384 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 171, 55 |
| Conread position: | 280-446 |
| Cow position: | chr27:18948451-18948617 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 138 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 155, 47 |
| Conread position: | 281-438 |
| Cow position: | chr27:19909520-19909351 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 87, 46 |
| Conread position: | 281-499 |
| Cow position: | chr27:12424788-12424994 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 162, 18 |
| Conread position: | 295-444 |
| Cow position: | chr27:14874767-14874620 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 76, 32 |
| Conread position: | 329-496 |
| Cow position: | chr27:9691957-9692119 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 160, 15 |
| Conread position: | 347-498 |
| Cow position: | chr27:11356464-11356615 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 357-506 |
| Cow position: | chr27:19083644-19083798 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.