Cow genome map
| Conread name: | Pig2-102D19 |
| Conread position: | 2-444 |
| Cow position: | chr29:34736910-34736495 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 14 |
| Conread position: | 2-483 |
| Cow position: | chr29:603758-603307 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 2-506 |
| Cow position: | chr29:21535148-21534637 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 2-508 |
| Cow position: | chr29:13553684-13554174 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 14 |
| Conread position: | 3-506 |
| Cow position: | chr29:12901557-12901073 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 4-504 |
| Cow position: | chr29:1956545-1956058 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 72 |
| Conread position: | 4-504 |
| Cow position: | chr29:39567233-39567715 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 29 |
| Conread position: | 8-438 |
| Cow position: | chr29:40337990-40337562 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 34 |
| Conread position: | 8-448 |
| Cow position: | chr29:32963084-32963534 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 79 |
| Conread position: | 8-502 |
| Cow position: | chr29:87464-86980 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 32 |
| Conread position: | 8-503 |
| Cow position: | chr29:2589361-2588858 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 208 |
| Conread position: | 9-451 |
| Cow position: | chr29:10154244-10153808 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 127 |
| Conread position: | 9-506 |
| Cow position: | chr29:18963281-18963770 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 185 |
| Conread position: | 10-514 |
| Cow position: | chr29:6218010-6217509 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 11-516 |
| Cow position: | chr29:11365798-11366283 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 141 |
| Conread position: | 21-506 |
| Cow position: | chr29:12450928-12451411 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 181 |
| Conread position: | 29-453 |
| Cow position: | chr29:11072125-11071717 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 169 |
| Conread position: | 77-503 |
| Cow position: | chr29:22895342-22895759 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 78-504 |
| Cow position: | chr29:4367349-4367759 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 108 |
| Conread position: | 91-502 |
| Cow position: | chr29:26616111-26615689 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 287 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 116, 231 |
| Conread position: | 112-484 |
| Cow position: | chr29:19508593-19508964 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 41 |
| Conread position: | 128-497 |
| Cow position: | chr29:9686347-9685981 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 62, 117 |
| Conread position: | 137-508 |
| Cow position: | chr29:19907031-19907394 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 144-502 |
| Cow position: | chr29:13372344-13372695 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 114, 90 |
| Conread position: | 145-472 |
| Cow position: | chr29:16657370-16657692 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 54, 104 |
| Conread position: | 149-451 |
| Cow position: | chr29:7408206-7407906 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 88 |
| Conread position: | 169-461 |
| Cow position: | chr29:2644605-2644313 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 169-504 |
| Cow position: | chr29:37961269-37960941 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 175-455 |
| Cow position: | chr29:3395822-3396089 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 182-501 |
| Cow position: | chr29:22069027-22068714 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 200-440 |
| Cow position: | chr29:29769609-29769381 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 200-460 |
| Cow position: | chr29:4194384-4194126 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 60, 24 |
| Conread position: | 200-508 |
| Cow position: | chr29:356063-356358 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 203-502 |
| Cow position: | chr29:34297825-34297537 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 204-428 |
| Cow position: | chr29:10475163-10475368 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 204-453 |
| Cow position: | chr29:30545121-30544885 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 54, 86 |
| Conread position: | 205-441 |
| Cow position: | chr29:21924952-21925181 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 205-497 |
| Cow position: | chr29:32655682-32655403 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 205-498 |
| Cow position: | chr29:11787533-11787827 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 205-499 |
| Cow position: | chr29:11634564-11634850 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 220 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 205-500 |
| Cow position: | chr29:30812492-30812781 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 205-504 |
| Cow position: | chr29:13634558-13634268 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 262, 29 |
| Conread position: | 205-508 |
| Cow position: | chr29:26298724-26299007 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 120, 29 |
| Conread position: | 206-504 |
| Cow position: | chr29:18021932-18021650 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 173, 28 |
| Conread position: | 207-433 |
| Cow position: | chr29:36404565-36404784 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 207-438 |
| Cow position: | chr29:44135717-44135493 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 207-502 |
| Cow position: | chr29:22175437-22175712 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 207-506 |
| Cow position: | chr29:2275089-2274804 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 208-507 |
| Cow position: | chr29:18695002-18695289 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 209-495 |
| Cow position: | chr29:41530596-41530872 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 212-503 |
| Cow position: | chr29:11005460-11005767 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 213-503 |
| Cow position: | chr29:11915567-11915859 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 215-501 |
| Cow position: | chr29:29302902-29302628 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 19 |
| Conread position: | 223-505 |
| Cow position: | chr29:26984986-26985261 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 260, 35 |
| Conread position: | 226-443 |
| Cow position: | chr29:19254062-19253849 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 80 |
| Conread position: | 226-499 |
| Cow position: | chr29:4520096-4520368 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 80 |
| Conread position: | 227-503 |
| Cow position: | chr29:17339535-17339273 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 228-510 |
| Cow position: | chr29:39023575-39023300 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 30, 84 |
| Conread position: | 231-502 |
| Cow position: | chr29:19897378-19897642 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 28, 69 |
| Conread position: | 235-499 |
| Cow position: | chr29:42886150-42886415 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 95 |
| Conread position: | 252-513 |
| Cow position: | chr29:22778395-22778138 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 6, 76 |
| Conread position: | 254-460 |
| Cow position: | chr29:709333-709131 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 256-504 |
| Cow position: | chr29:38580767-38581013 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 207, 71 |
| Conread position: | 257-503 |
| Cow position: | chr29:31489112-31489351 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 217, 39 |
| Conread position: | 261-506 |
| Cow position: | chr29:7663469-7663233 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 48 |
| Conread position: | 274-467 |
| Cow position: | chr29:7392904-7393096 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 281-506 |
| Cow position: | chr29:25924155-25923925 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 144, 46 |
| Conread position: | 287-505 |
| Cow position: | chr29:16055316-16055097 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 89, 42 |
| Conread position: | 290-504 |
| Cow position: | chr29:35442636-35442429 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 195, 17 |
| Conread position: | 302-508 |
| Cow position: | chr29:29559886-29559682 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 23 |
| Conread position: | 308-486 |
| Cow position: | chr29:45383965-45384139 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 315-500 |
| Cow position: | chr29:942474-942660 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 108, 12 |
| Conread position: | 330-506 |
| Cow position: | chr29:6771993-6772168 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 158, 14 |
| Conread position: | 344-511 |
| Cow position: | chr29:23233322-23233494 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 43, 111 |
| Conread position: | 346-506 |
| Cow position: | chr29:14758987-14758827 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 97, 144 |
| Conread position: | 372-506 |
| Cow position: | chr29:35000273-35000138 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 116, 17 |
Show alignments to all cow chromosomes.