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Cow genome map

           
Conread name:
           
Pig2-102D19
        

               
Conread position:
               
1-439
               

               
Cow position:
               
chrX:25966619-25967031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
2-454
               

               
Cow position:
               
chrX:160468-160021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
2-460
               

               
Cow position:
               
chrX:38439046-38439495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 78
               

               
Conread position:
               
2-468
               

               
Cow position:
               
chrX:2648791-2648326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 12
               

               
Conread position:
               
2-498
               

               
Cow position:
               
chrX:33803450-33802947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 19
               

               
Conread position:
               
2-506
               

               
Cow position:
               
chrX:3154684-3154178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 14
               

               
Conread position:
               
2-506
               

               
Cow position:
               
chrX:19878604-19879103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 12
               

               
Conread position:
               
2-506
               

               
Cow position:
               
chrX:28111064-28111574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 73
               

               
Conread position:
               
2-506
               

               
Cow position:
               
chrX:36840432-36840927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 19
               

               
Conread position:
               
2-508
               

               
Cow position:
               
chrX:1810589-1810094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 74
               

               
Conread position:
               
7-463
               

               
Cow position:
               
chrX:33827463-33826997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 103
               

               
Conread position:
               
7-492
               

               
Cow position:
               
chrX:13785803-13785314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 71
               

               
Conread position:
               
7-494
               

               
Cow position:
               
chrX:48247262-48246795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
181, 64
               

               
Conread position:
               
7-501
               

               
Cow position:
               
chrX:1616482-1615984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 233
               

               
Conread position:
               
8-434
               

               
Cow position:
               
chrX:12115617-12116037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 71
               

               
Conread position:
               
8-447
               

               
Cow position:
               
chrX:35609562-35609992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 63
               

               
Conread position:
               
8-449
               

               
Cow position:
               
chrX:9252595-9252158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 39
               

               
Conread position:
               
8-456
               

               
Cow position:
               
chrX:19023003-19023456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 68
               

               
Conread position:
               
8-462
               

               
Cow position:
               
chrX:23564221-23563776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 68
               

               
Conread position:
               
8-485
               

               
Cow position:
               
chrX:43648182-43647704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 282
               

               
Conread position:
               
8-486
               

               
Cow position:
               
chrX:39546403-39545934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 231
               

               
Conread position:
               
8-502
               

               
Cow position:
               
chrX:34441871-34441394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 70
               

               
Conread position:
               
8-502
               

               
Cow position:
               
chrX:38963689-38964168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 36
               

               
Conread position:
               
8-504
               

               
Cow position:
               
chrX:14974162-14973684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
31, 177
               

               
Conread position:
               
8-508
               

               
Cow position:
               
chrX:29289152-29289644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 69
               

               
Conread position:
               
9-435
               

               
Cow position:
               
chrX:11655654-11656084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 44
               

               
Conread position:
               
9-502
               

               
Cow position:
               
chrX:26626116-26625611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
9-504
               

               
Cow position:
               
chrX:27450471-27449936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 359
               

               
Conread position:
               
9-508
               

               
Cow position:
               
chrX:34564877-34565352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 68
               

               
Conread position:
               
9-514
               

               
Cow position:
               
chrX:38936268-38936767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 232
               

               
Conread position:
               
9-516
               

               
Cow position:
               
chrX:30162584-30163074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 13
               

               
Conread position:
               
10-450
               

               
Cow position:
               
chrX:27516114-27516534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 16
               

               
Conread position:
               
10-455
               

               
Cow position:
               
chrX:35680922-35681352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
189, 66
               

               
Conread position:
               
10-506
               

               
Cow position:
               
chrX:630730-630245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 126
               

               
Conread position:
               
10-513
               

               
Cow position:
               
chrX:1978068-1978585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
15-502
               

               
Cow position:
               
chrX:13868280-13868762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 61
               

               
Conread position:
               
16-506
               

               
Cow position:
               
chrX:32743122-32743598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 61
               

               
Conread position:
               
20-492
               

               
Cow position:
               
chrX:43408583-43409055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 201
               

               
Conread position:
               
29-459
               

               
Cow position:
               
chrX:42994211-42994626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 50
               

               
Conread position:
               
31-446
               

               
Cow position:
               
chrX:47379868-47379464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
159, 46
               

               
Conread position:
               
40-504
               

               
Cow position:
               
chrX:32309702-32310167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 205
               

               
Conread position:
               
41-506
               

               
Cow position:
               
chrX:27288139-27287672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 154
               

               
Conread position:
               
42-486
               

               
Cow position:
               
chrX:28929461-28929883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
106, 148
               

               
Conread position:
               
43-475
               

               
Cow position:
               
chrX:25419553-25419124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 28
               

               
Conread position:
               
44-499
               

               
Cow position:
               
chrX:39700825-39701282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 32
               

               
Conread position:
               
44-504
               

               
Cow position:
               
chrX:2300537-2300987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 185
               

               
Conread position:
               
50-506
               

               
Cow position:
               
chrX:47743690-47744152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 17
               

               
Conread position:
               
50-507
               

               
Cow position:
               
chrX:10301956-10302401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 62
               

               
Conread position:
               
65-439
               

               
Cow position:
               
chrX:34192308-34192667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 107
               

               
Conread position:
               
67-503
               

               
Cow position:
               
chrX:2786917-2786495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 155
               

               
Conread position:
               
72-503
               

               
Cow position:
               
chrX:11981755-11982199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 175
               

               
Conread position:
               
77-481
               

               
Cow position:
               
chrX:41743552-41743950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 160
               

               
Conread position:
               
77-495
               

               
Cow position:
               
chrX:34401637-34402053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 85
               

               
Conread position:
               
77-501
               

               
Cow position:
               
chrX:24886852-24886430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
124, 80
               

               
Conread position:
               
77-501
               

               
Cow position:
               
chrX:31250031-31250443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 65
               

               
Conread position:
               
80-508
               

               
Cow position:
               
chrX:36010250-36009846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 157
               

               
Conread position:
               
81-510
               

               
Cow position:
               
chrX:28787014-28787416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
90-504
               

               
Cow position:
               
chrX:25232238-25232655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 151
               

               
Conread position:
               
96-514
               

               
Cow position:
               
chrX:40558018-40557612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 141
               

               
Conread position:
               
111-504
               

               
Cow position:
               
chrX:25337850-25338250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 128
               

               
Conread position:
               
115-506
               

               
Cow position:
               
chrX:25713486-25713860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
116-487
               

               
Cow position:
               
chrX:9161266-9161623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 131
               

               
Conread position:
               
117-502
               

               
Cow position:
               
chrX:33639647-33640035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
119-474
               

               
Cow position:
               
chrX:5047215-5046866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
120-516
               

               
Cow position:
               
chrX:33466299-33466672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
81, 106
               

               
Conread position:
               
123-506
               

               
Cow position:
               
chrX:42500181-42500562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
128-435
               

               
Cow position:
               
chrX:19188626-19188930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 109
               

               
Conread position:
               
132-506
               

               
Cow position:
               
chrX:11314084-11313716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 104
               

               
Conread position:
               
137-502
               

               
Cow position:
               
chrX:30133625-30133258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
64, 104
               

               
Conread position:
               
157-495
               

               
Cow position:
               
chrX:42874697-42875034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
158-440
               

               
Cow position:
               
chrX:8730799-8731084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
159-502
               

               
Cow position:
               
chrX:17662869-17662535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
98, 9
               

               
Conread position:
               
161-503
               

               
Cow position:
               
chrX:12017998-12018353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
161-512
               

               
Cow position:
               
chrX:8925429-8925770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
40, 36
               

               
Conread position:
               
165-516
               

               
Cow position:
               
chrX:488217-488558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 36
               

               
Conread position:
               
169-486
               

               
Cow position:
               
chrX:40647709-40648027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
170-506
               

               
Cow position:
               
chrX:11746575-11746907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
172-450
               

               
Cow position:
               
chrX:17725712-17725980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 62
               

               
Conread position:
               
179-501
               

               
Cow position:
               
chrX:27509279-27508967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
182-506
               

               
Cow position:
               
chrX:7496989-7497307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 47
               

               
Conread position:
               
184-436
               

               
Cow position:
               
chrX:41673849-41674103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
17, 8
               

               
Conread position:
               
184-502
               

               
Cow position:
               
chrX:24366083-24365761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
186-461
               

               
Cow position:
               
chrX:23497915-23497652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 52
               

               
Conread position:
               
188-502
               

               
Cow position:
               
chrX:37956118-37956416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 48
               

               
Conread position:
               
191-506
               

               
Cow position:
               
chrX:25571241-25570929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 116
               

               
Conread position:
               
196-508
               

               
Cow position:
               
chrX:11589831-11589522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
198-502
               

               
Cow position:
               
chrX:13382087-13382391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
200-459
               

               
Cow position:
               
chrX:35284382-35284638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
28, 97
               

               
Conread position:
               
200-497
               

               
Cow position:
               
chrX:30862067-30862369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
200-504
               

               
Cow position:
               
chrX:24259813-24259519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
200-504
               

               
Cow position:
               
chrX:37119364-37119655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
200-508
               

               
Cow position:
               
chrX:40788968-40789274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
204-437
               

               
Cow position:
               
chrX:42381331-42381107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
205-357
               

               
Cow position:
               
chrX:42499259-42499111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
205-432
               

               
Cow position:
               
chrX:2029160-2029381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
205-441
               

               
Cow position:
               
chrX:2383259-2383487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
205-449
               

               
Cow position:
               
chrX:33493545-33493783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
205-450
               

               
Cow position:
               
chrX:36975719-36975957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
205-461
               

               
Cow position:
               
chrX:26880380-26880609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
143, 29
               

               
Conread position:
               
205-470
               

               
Cow position:
               
chrX:8682160-8681899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
205-485
               

               
Cow position:
               
chrX:38840658-38840924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
205-499
               

               
Cow position:
               
chrX:5900227-5900521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
205-499
               

               
Cow position:
               
chrX:6563282-6563581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
205-499
               

               
Cow position:
               
chrX:15049256-15049552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
205-501
               

               
Cow position:
               
chrX:6278736-6278443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
205-502
               

               
Cow position:
               
chrX:27680173-27680458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
53, 26
               

               
Conread position:
               
205-504
               

               
Cow position:
               
chrX:17631032-17630741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
205-504
               

               
Cow position:
               
chrX:19930426-19930713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
205-504
               

               
Cow position:
               
chrX:42011050-42011343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
205-506
               

               
Cow position:
               
chrX:7425234-7425530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
205-506
               

               
Cow position:
               
chrX:23414598-23414304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
205-506
               

               
Cow position:
               
chrX:27176550-27176248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
205-508
               

               
Cow position:
               
chrX:18456162-18456468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
205-510
               

               
Cow position:
               
chrX:40692968-40692683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
206-506
               

               
Cow position:
               
chrX:21664952-21664656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
207-492
               

               
Cow position:
               
chrX:26876109-26875835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
207-503
               

               
Cow position:
               
chrX:8517648-8517933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
254, 25
               

               
Conread position:
               
207-504
               

               
Cow position:
               
chrX:14900949-14900671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
207-508
               

               
Cow position:
               
chrX:35925739-35926023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
207-514
               

               
Cow position:
               
chrX:32431399-32431691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 27
               

               
Conread position:
               
208-496
               

               
Cow position:
               
chrX:16416281-16416561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
208-501
               

               
Cow position:
               
chrX:39558575-39558293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 29
               

               
Conread position:
               
208-503
               

               
Cow position:
               
chrX:13245364-13245659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
208-506
               

               
Cow position:
               
chrX:13323227-13322923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
209-490
               

               
Cow position:
               
chrX:3146970-3147246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
210-427
               

               
Cow position:
               
chrX:36283120-36283336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
49, 26
               

               
Conread position:
               
211-502
               

               
Cow position:
               
chrX:11633454-11633742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
212-450
               

               
Cow position:
               
chrX:29509667-29509433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
212-451
               

               
Cow position:
               
chrX:21642701-21642471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
161, 22
               

               
Conread position:
               
212-506
               

               
Cow position:
               
chrX:17042467-17042747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
213-502
               

               
Cow position:
               
chrX:46073044-46072757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
44, 24
               

               
Conread position:
               
215-508
               

               
Cow position:
               
chrX:29602053-29601762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
216-503
               

               
Cow position:
               
chrX:20792037-20791754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
218-502
               

               
Cow position:
               
chrX:2186041-2186311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
219-497
               

               
Cow position:
               
chrX:41560455-41560206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
222-499
               

               
Cow position:
               
chrX:26940705-26940447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
228-447
               

               
Cow position:
               
chrX:29542428-29542215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
229-496
               

               
Cow position:
               
chrX:8917645-8917901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
230-504
               

               
Cow position:
               
chrX:46315588-46315314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
231-497
               

               
Cow position:
               
chrX:157982-157717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
231-498
               

               
Cow position:
               
chrX:29032208-29032471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
27, 67
               

               
Conread position:
               
231-502
               

               
Cow position:
               
chrX:33000697-33000965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 97
               

               
Conread position:
               
234-498
               

               
Cow position:
               
chrX:18216073-18216327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 94
               

               
Conread position:
               
234-514
               

               
Cow position:
               
chrX:29120853-29121114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
235-451
               

               
Cow position:
               
chrX:841956-842166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
235-506
               

               
Cow position:
               
chrX:31340502-31340775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 93
               

               
Conread position:
               
236-503
               

               
Cow position:
               
chrX:2147133-2147406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
22, 96
               

               
Conread position:
               
245-502
               

               
Cow position:
               
chrX:36961443-36961697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
247-514
               

               
Cow position:
               
chrX:31311835-31312096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 81
               

               
Conread position:
               
256-462
               

               
Cow position:
               
chrX:38188262-38188057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
177, 71
               

               
Conread position:
               
257-515
               

               
Cow position:
               
chrX:32820850-32821096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
120, 8
               

               
Conread position:
               
257-516
               

               
Cow position:
               
chrX:30005089-30005337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
206, 48
               

               
Conread position:
               
258-498
               

               
Cow position:
               
chrX:16514443-16514206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 39
               

               
Conread position:
               
263-503
               

               
Cow position:
               
chrX:46146734-46146500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
111, 40
               

               
Conread position:
               
264-503
               

               
Cow position:
               
chrX:38999671-38999917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
265-498
               

               
Cow position:
               
chrX:25388409-25388181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
41, 63
               

               
Conread position:
               
268-508
               

               
Cow position:
               
chrX:23666954-23667192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
91, 39
               

               
Conread position:
               
269-446
               

               
Cow position:
               
chrX:33590560-33590734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
117, 42
               

               
Conread position:
               
279-497
               

               
Cow position:
               
chrX:24747553-24747343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
79, 48
               

               
Conread position:
               
279-502
               

               
Cow position:
               
chrX:39415527-39415310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
205, 35
               

               
Conread position:
               
280-461
               

               
Cow position:
               
chrX:31273092-31273262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
280-499
               

               
Cow position:
               
chrX:23254370-23254147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 47
               

               
Conread position:
               
280-513
               

               
Cow position:
               
chrX:40642811-40643063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
282-496
               

               
Cow position:
               
chrX:8913765-8913977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
179, 45
               

               
Conread position:
               
282-496
               

               
Cow position:
               
chrX:8915509-8915721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
179, 45
               

               
Conread position:
               
282-502
               

               
Cow position:
               
chrX:31252260-31252468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
283-485
               

               
Cow position:
               
chrX:29055966-29056158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
284-435
               

               
Cow position:
               
chrX:6479845-6479989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
285-486
               

               
Cow position:
               
chrX:34993988-34994174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
287-499
               

               
Cow position:
               
chrX:18417741-18417533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
197, 13
               

               
Conread position:
               
296-504
               

               
Cow position:
               
chrX:29680404-29680199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
168, 31
               

               
Conread position:
               
304-506
               

               
Cow position:
               
chrX:18142592-18142389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
307-487
               

               
Cow position:
               
chrX:41070804-41070979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
311-511
               

               
Cow position:
               
chrX:26493766-26493564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
134, 16
               

               
Conread position:
               
312-504
               

               
Cow position:
               
chrX:6041342-6041147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
317-504
               

               
Cow position:
               
chrX:6656263-6656445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
146, 10
               

               
Conread position:
               
332-506
               

               
Cow position:
               
chrX:48191104-48190928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
152, 16
               

               
Conread position:
               
334-506
               

               
Cow position:
               
chrX:22326011-22326184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 26
               

               
Conread position:
               
338-515
               

               
Cow position:
               
chrX:17896054-17895878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
132, 25
               

               
Conread position:
               
341-499
               

               
Cow position:
               
chrX:27771678-27771515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
345-498
               

               
Cow position:
               
chrX:19678364-19678211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
139, 119
               

               
Conread position:
               
345-504
               

               
Cow position:
               
chrX:25441088-25440936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
116, 22
               

               
Conread position:
               
354-508
               

               
Cow position:
               
chrX:7344999-7345150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
371-519
               

               
Cow position:
               
chrX:6633006-6633157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
115, 0
               
Show alignments to all cow chromosomes.