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Cow genome map

           
Conread name:
           
Pig2-106G07
        

               
Conread position:
               
16-324
               

               
Cow position:
               
chr11:70277939-70278243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
33-194
               

               
Cow position:
               
chr11:69139786-69139948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
57, 9
               

               
Conread position:
               
44-331
               

               
Cow position:
               
chr11:68206686-68206981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
57, 157
               

               
Conread position:
               
45-232
               

               
Cow position:
               
chr11:69168747-69168548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
46-236
               

               
Cow position:
               
chr11:34136399-34136202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
47-312
               

               
Cow position:
               
chr11:15062607-15062328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 241
               

               
Conread position:
               
47-312
               

               
Cow position:
               
chr11:65409013-65409278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
47-314
               

               
Cow position:
               
chr11:27913443-27913150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 157
               

               
Conread position:
               
47-314
               

               
Cow position:
               
chr11:84228566-84228837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
43, 144
               

               
Conread position:
               
47-324
               

               
Cow position:
               
chr11:78380912-78381189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
52, 138
               

               
Conread position:
               
47-324
               

               
Cow position:
               
chr11:81162290-81162568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
176, 59
               

               
Conread position:
               
47-326
               

               
Cow position:
               
chr11:77705907-77705618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
47-327
               

               
Cow position:
               
chr11:85723851-85723564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 152
               

               
Conread position:
               
48-163
               

               
Cow position:
               
chr11:1842113-1841995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
48-176
               

               
Cow position:
               
chr11:8421969-8422099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
48-176
               

               
Cow position:
               
chr11:62081816-62081949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
48-176
               

               
Cow position:
               
chr11:81175754-81175615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
48-179
               

               
Cow position:
               
chr11:37565025-37564888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
48-180
               

               
Cow position:
               
chr11:15591324-15591460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
48-184
               

               
Cow position:
               
chr11:4411717-4411858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
48-189
               

               
Cow position:
               
chr11:30654804-30654661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
45, 51
               

               
Conread position:
               
48-189
               

               
Cow position:
               
chr11:85186371-85186522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
48-196
               

               
Cow position:
               
chr11:58186028-58185882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
78, 56
               

               
Conread position:
               
48-199
               

               
Cow position:
               
chr11:22884562-22884407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
48-199
               

               
Cow position:
               
chr11:64022954-64023103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
48, 105
               

               
Conread position:
               
48-200
               

               
Cow position:
               
chr11:57767345-57767186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
29, 137
               

               
Conread position:
               
48-200
               

               
Cow position:
               
chr11:63485088-63484931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
48-201
               

               
Cow position:
               
chr11:21173281-21173443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
41, 149
               

               
Conread position:
               
48-203
               

               
Cow position:
               
chr11:80586422-80586267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
78, 51
               

               
Conread position:
               
48-204
               

               
Cow position:
               
chr11:5176225-5176388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
48-205
               

               
Cow position:
               
chr11:1485078-1485236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
70, 51
               

               
Conread position:
               
48-206
               

               
Cow position:
               
chr11:17074072-17074229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 77
               

               
Conread position:
               
48-206
               

               
Cow position:
               
chr11:62566984-62566835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
74, 59
               

               
Conread position:
               
48-207
               

               
Cow position:
               
chr11:75915142-75914982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 141
               

               
Conread position:
               
48-210
               

               
Cow position:
               
chr11:77017386-77017227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
48-211
               

               
Cow position:
               
chr11:15366822-15366988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 143
               

               
Conread position:
               
48-211
               

               
Cow position:
               
chr11:15607833-15607987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
48-212
               

               
Cow position:
               
chr11:9699099-9699261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
78, 51
               

               
Conread position:
               
48-212
               

               
Cow position:
               
chr11:21830055-21830226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
44, 147
               

               
Conread position:
               
48-212
               

               
Cow position:
               
chr11:45350354-45350528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
48-213
               

               
Cow position:
               
chr11:12555148-12555323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 150
               

               
Conread position:
               
48-213
               

               
Cow position:
               
chr11:19578866-19579032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
48-214
               

               
Cow position:
               
chr11:46784619-46784456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
78, 59
               

               
Conread position:
               
48-215
               

               
Cow position:
               
chr11:46884531-46884354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 150
               

               
Conread position:
               
48-215
               

               
Cow position:
               
chr11:56115093-56114919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 147
               

               
Conread position:
               
48-218
               

               
Cow position:
               
chr11:63165495-63165669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 144
               

               
Conread position:
               
48-218
               

               
Cow position:
               
chr11:64409122-64408954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 116
               

               
Conread position:
               
48-222
               

               
Cow position:
               
chr11:20205702-20205878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
48-224
               

               
Cow position:
               
chr11:3797860-3797689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
74, 36
               

               
Conread position:
               
48-225
               

               
Cow position:
               
chr11:4225244-4225068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
48-226
               

               
Cow position:
               
chr11:16315030-16314842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 146
               

               
Conread position:
               
48-226
               

               
Cow position:
               
chr11:69417559-69417373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 146
               

               
Conread position:
               
48-229
               

               
Cow position:
               
chr11:18915166-18914991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
169, 59
               

               
Conread position:
               
48-229
               

               
Cow position:
               
chr11:30894847-30895037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
44, 149
               

               
Conread position:
               
48-236
               

               
Cow position:
               
chr11:25119780-25119972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
55, 83
               

               
Conread position:
               
48-236
               

               
Cow position:
               
chr11:34467718-34467530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
56, 140
               

               
Conread position:
               
48-237
               

               
Cow position:
               
chr11:15369545-15369345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
44, 149
               

               
Conread position:
               
48-239
               

               
Cow position:
               
chr11:8584471-8584283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
180, 59
               

               
Conread position:
               
48-239
               

               
Cow position:
               
chr11:27461955-27462142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
180, 58
               

               
Conread position:
               
48-239
               

               
Cow position:
               
chr11:77013926-77013740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
78, 58
               

               
Conread position:
               
48-240
               

               
Cow position:
               
chr11:39854866-39855059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
51, 140
               

               
Conread position:
               
48-244
               

               
Cow position:
               
chr11:17083158-17083358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 144
               

               
Conread position:
               
48-246
               

               
Cow position:
               
chr11:1067282-1067492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 150
               

               
Conread position:
               
48-251
               

               
Cow position:
               
chr11:80639396-80639605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
56, 17
               

               
Conread position:
               
48-252
               

               
Cow position:
               
chr11:29786337-29786553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
51, 154
               

               
Conread position:
               
48-256
               

               
Cow position:
               
chr11:30172455-30172247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 126
               

               
Conread position:
               
48-261
               

               
Cow position:
               
chr11:27449476-27449678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
48-261
               

               
Cow position:
               
chr11:43914449-43914230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
43, 150
               

               
Conread position:
               
48-270
               

               
Cow position:
               
chr11:17676219-17676449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
50, 146
               

               
Conread position:
               
48-270
               

               
Cow position:
               
chr11:30370258-30370029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 146
               

               
Conread position:
               
48-271
               

               
Cow position:
               
chr11:18785740-18785951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
78, 41
               

               
Conread position:
               
48-276
               

               
Cow position:
               
chr11:8670173-8669924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 164
               

               
Conread position:
               
48-277
               

               
Cow position:
               
chr11:41603545-41603776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
48-295
               

               
Cow position:
               
chr11:29960449-29960189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 140
               

               
Conread position:
               
48-299
               

               
Cow position:
               
chr11:29659715-29659452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 5
               

               
Conread position:
               
48-302
               

               
Cow position:
               
chr11:31875250-31874979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
41, 150
               

               
Conread position:
               
48-305
               

               
Cow position:
               
chr11:11994556-11994822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 121
               

               
Conread position:
               
48-306
               

               
Cow position:
               
chr11:375614-375337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
30, 123
               

               
Conread position:
               
48-307
               

               
Cow position:
               
chr11:39060449-39060719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 145
               

               
Conread position:
               
48-310
               

               
Cow position:
               
chr11:63919911-63920170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
48-311
               

               
Cow position:
               
chr11:42067020-42066738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
55, 162
               

               
Conread position:
               
48-311
               

               
Cow position:
               
chr11:63470013-63469754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
165, 61
               

               
Conread position:
               
48-312
               

               
Cow position:
               
chr11:7385590-7385306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
52, 79
               

               
Conread position:
               
48-314
               

               
Cow position:
               
chr11:14470517-14470245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
51, 140
               

               
Conread position:
               
48-314
               

               
Cow position:
               
chr11:17859997-17860279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 83
               

               
Conread position:
               
48-314
               

               
Cow position:
               
chr11:27907926-27907668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
48-314
               

               
Cow position:
               
chr11:41133924-41134190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
115, 58
               

               
Conread position:
               
48-314
               

               
Cow position:
               
chr11:64044373-64044116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
180, 60
               

               
Conread position:
               
48-314
               

               
Cow position:
               
chr11:77745093-77745381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
43, 149
               

               
Conread position:
               
48-314
               

               
Cow position:
               
chr11:83032833-83032558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 145
               

               
Conread position:
               
48-315
               

               
Cow position:
               
chr11:71390418-71390690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
74, 51
               

               
Conread position:
               
48-316
               

               
Cow position:
               
chr11:36182847-36182559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
48-316
               

               
Cow position:
               
chr11:62620532-62620256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 146
               

               
Conread position:
               
48-317
               

               
Cow position:
               
chr11:15772557-15772843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
45, 149
               

               
Conread position:
               
48-317
               

               
Cow position:
               
chr11:30708661-30708376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
47, 103
               

               
Conread position:
               
48-317
               

               
Cow position:
               
chr11:42083609-42083350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
78, 38
               

               
Conread position:
               
48-318
               

               
Cow position:
               
chr11:31337535-31337253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
74, 40
               

               
Conread position:
               
48-318
               

               
Cow position:
               
chr11:34144763-34145044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
53, 130
               

               
Conread position:
               
48-318
               

               
Cow position:
               
chr11:49872731-49873017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
48, 134
               

               
Conread position:
               
48-319
               

               
Cow position:
               
chr11:28993592-28993862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 59
               

               
Conread position:
               
48-319
               

               
Cow position:
               
chr11:49153096-49152822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 58
               

               
Conread position:
               
48-319
               

               
Cow position:
               
chr11:52690369-52690652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
48-319
               

               
Cow position:
               
chr11:62742492-62742763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
48, 140
               

               
Conread position:
               
48-319
               

               
Cow position:
               
chr11:66041428-66041142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
54, 142
               

               
Conread position:
               
48-319
               

               
Cow position:
               
chr11:67600934-67600652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
60, 142
               

               
Conread position:
               
48-319
               

               
Cow position:
               
chr11:70206471-70206193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
48-319
               

               
Cow position:
               
chr11:73353911-73354184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 141
               

               
Conread position:
               
48-319
               

               
Cow position:
               
chr11:83398063-83397775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 149
               

               
Conread position:
               
48-320
               

               
Cow position:
               
chr11:866436-866173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
214, 58
               

               
Conread position:
               
48-320
               

               
Cow position:
               
chr11:21399094-21398834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
31, 59
               

               
Conread position:
               
48-320
               

               
Cow position:
               
chr11:23407616-23407330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
46, 144
               

               
Conread position:
               
48-321
               

               
Cow position:
               
chr11:83043211-83043496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
52, 144
               

               
Conread position:
               
48-322
               

               
Cow position:
               
chr11:26535940-26535643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
48-322
               

               
Cow position:
               
chr11:35213015-35213295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
48-323
               

               
Cow position:
               
chr11:40818476-40818772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:8544860-8545147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
45, 146
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:11558327-11558032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 148
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:13042992-13043279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:17227495-17227781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
54, 136
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:19247049-19247331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:21728132-21728404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
206, 92
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:21843983-21844268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
41, 100
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:25620234-25620531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
41, 247
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:27747074-27746789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
51, 143
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:30165667-30165375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 149
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:32254060-32254352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
58, 149
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:34646751-34646456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
44, 154
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:38236401-38236108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
57, 142
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:39499511-39499223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
47, 147
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:42296471-42296753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:45631624-45631897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:47899406-47899144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
215, 59
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:48296181-48295897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:48544592-48544301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
49, 239
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:48660086-48659796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
51, 150
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:48932433-48932720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:49057539-49057267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
78, 51
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:51729430-51729153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 38
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:52297067-52297356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
45, 146
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:52380716-52381009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 154
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:53778776-53778480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 152
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:55494820-55494544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
180, 17
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:55744625-55744342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 150
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:59903048-59902756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
37, 156
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:62239897-62239611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 151
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:63435678-63435382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 142
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:65157249-65157547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:68909697-68909985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
44, 162
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:70251072-70250790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
41, 97
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:83066648-83066359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 151
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr11:85703845-85703571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 104
               

               
Conread position:
               
48-326
               

               
Cow position:
               
chr11:7874296-7874012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 150
               

               
Conread position:
               
48-326
               

               
Cow position:
               
chr11:35347595-35347890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
44, 150
               

               
Conread position:
               
48-326
               

               
Cow position:
               
chr11:40395592-40395302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
51, 143
               

               
Conread position:
               
48-327
               

               
Cow position:
               
chr11:7460470-7460753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
79, 17
               

               
Conread position:
               
48-327
               

               
Cow position:
               
chr11:13592895-13592601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
52, 152
               

               
Conread position:
               
48-327
               

               
Cow position:
               
chr11:45872154-45872455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
57, 155
               

               
Conread position:
               
48-327
               

               
Cow position:
               
chr11:70951023-70950747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 145
               

               
Conread position:
               
48-328
               

               
Cow position:
               
chr11:17889571-17889862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
41, 101
               

               
Conread position:
               
48-328
               

               
Cow position:
               
chr11:30638796-30639081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
52, 146
               

               
Conread position:
               
48-328
               

               
Cow position:
               
chr11:43360631-43360923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
46, 133
               

               
Conread position:
               
48-329
               

               
Cow position:
               
chr11:25791537-25791827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 150
               

               
Conread position:
               
48-329
               

               
Cow position:
               
chr11:65495188-65495466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
47, 144
               

               
Conread position:
               
48-329
               

               
Cow position:
               
chr11:70756630-70756343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
45, 145
               

               
Conread position:
               
48-330
               

               
Cow position:
               
chr11:2084301-2084001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
47, 156
               

               
Conread position:
               
48-331
               

               
Cow position:
               
chr11:259020-259315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
48-331
               

               
Cow position:
               
chr11:23251443-23251734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
48-331
               

               
Cow position:
               
chr11:43008150-43008448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 60
               

               
Conread position:
               
48-331
               

               
Cow position:
               
chr11:68913299-68913000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 158
               

               
Conread position:
               
48-332
               

               
Cow position:
               
chr11:18508873-18509161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
50, 150
               

               
Conread position:
               
48-337
               

               
Cow position:
               
chr11:50472474-50472169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
50, 88
               

               
Conread position:
               
48-339
               

               
Cow position:
               
chr11:48672870-48672567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
50, 150
               

               
Conread position:
               
48-339
               

               
Cow position:
               
chr11:63998934-63999239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 150
               

               
Conread position:
               
49-176
               

               
Cow position:
               
chr11:82732999-82733131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
49-213
               

               
Cow position:
               
chr11:18791908-18792085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
42, 152
               

               
Conread position:
               
49-214
               

               
Cow position:
               
chr11:66099702-66099881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 153
               

               
Conread position:
               
49-215
               

               
Cow position:
               
chr11:8683923-8684099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
49, 149
               

               
Conread position:
               
49-226
               

               
Cow position:
               
chr11:71854129-71854309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 86
               

               
Conread position:
               
49-234
               

               
Cow position:
               
chr11:47784935-47784736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
45, 153
               

               
Conread position:
               
49-239
               

               
Cow position:
               
chr11:5219010-5219203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 152
               

               
Conread position:
               
49-240
               

               
Cow position:
               
chr11:62889737-62889939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
40, 149
               

               
Conread position:
               
49-319
               

               
Cow position:
               
chr11:1380832-1380552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
49, 148
               

               
Conread position:
               
49-320
               

               
Cow position:
               
chr11:2917438-2917717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
53, 146
               

               
Conread position:
               
49-324
               

               
Cow position:
               
chr11:17493638-17493343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
49-326
               

               
Cow position:
               
chr11:49149201-49148902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
49-331
               

               
Cow position:
               
chr11:70978584-70978869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
49-332
               

               
Cow position:
               
chr11:87155676-87155376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
50-185
               

               
Cow position:
               
chr11:38223639-38223778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 85
               

               
Conread position:
               
50-188
               

               
Cow position:
               
chr11:19147988-19148130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
50-200
               

               
Cow position:
               
chr11:60720300-60720460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 148
               

               
Conread position:
               
50-207
               

               
Cow position:
               
chr11:47411996-47411830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 158
               

               
Conread position:
               
50-208
               

               
Cow position:
               
chr11:66104239-66104407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
51, 148
               

               
Conread position:
               
50-209
               

               
Cow position:
               
chr11:49396372-49396539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 146
               

               
Conread position:
               
50-210
               

               
Cow position:
               
chr11:79707857-79707699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
48, 93
               

               
Conread position:
               
50-213
               

               
Cow position:
               
chr11:36092765-36092934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 27
               

               
Conread position:
               
50-215
               

               
Cow position:
               
chr11:9699044-9698883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
7, 47
               

               
Conread position:
               
50-215
               

               
Cow position:
               
chr11:49207865-49207692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
50-217
               

               
Cow position:
               
chr11:45671226-45671389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
50-226
               

               
Cow position:
               
chr11:18447347-18447522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
71, 55
               

               
Conread position:
               
50-226
               

               
Cow position:
               
chr11:34968459-34968644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
50-233
               

               
Cow position:
               
chr11:58927727-58927545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 81
               

               
Conread position:
               
50-236
               

               
Cow position:
               
chr11:28078643-28078462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 114
               

               
Conread position:
               
50-236
               

               
Cow position:
               
chr11:78820303-78820113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
44, 128
               

               
Conread position:
               
50-241
               

               
Cow position:
               
chr11:62811450-62811250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 99
               

               
Conread position:
               
50-271
               

               
Cow position:
               
chr11:41313508-41313736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
50-277
               

               
Cow position:
               
chr11:4199428-4199186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
41, 135
               

               
Conread position:
               
50-296
               

               
Cow position:
               
chr11:6194542-6194300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
76, 57
               

               
Conread position:
               
50-306
               

               
Cow position:
               
chr11:48429272-48428989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 153
               

               
Conread position:
               
50-312
               

               
Cow position:
               
chr11:55762011-55761747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 56
               

               
Conread position:
               
50-313
               

               
Cow position:
               
chr11:46747705-46747988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
46, 148
               

               
Conread position:
               
50-314
               

               
Cow position:
               
chr11:38639253-38638994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
73, 52
               

               
Conread position:
               
50-314
               

               
Cow position:
               
chr11:63202093-63202372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 148
               

               
Conread position:
               
50-314
               

               
Cow position:
               
chr11:63433912-63434181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
50-314
               

               
Cow position:
               
chr11:70483697-70483984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 147
               

               
Conread position:
               
50-314
               

               
Cow position:
               
chr11:71806012-71806269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
164, 52
               

               
Conread position:
               
50-320
               

               
Cow position:
               
chr11:65607537-65607822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
50-321
               

               
Cow position:
               
chr11:39115627-39115361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
183, 47
               

               
Conread position:
               
50-321
               

               
Cow position:
               
chr11:75874618-75874884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 57
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr11:10095497-10095212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
41, 146
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr11:18699024-18698742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 56
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr11:36647481-36647228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
167, 9
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr11:50152659-50152951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 147
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr11:55334073-55333776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
42, 162
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr11:66572338-66572636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 148
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr11:71009261-71009003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
178, 32
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr11:71492708-71492990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
50-327
               

               
Cow position:
               
chr11:41985894-41986180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 143
               

               
Conread position:
               
50-329
               

               
Cow position:
               
chr11:21852162-21852444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
50-331
               

               
Cow position:
               
chr11:39462773-39462487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 81
               

               
Conread position:
               
50-331
               

               
Cow position:
               
chr11:62789281-62788986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
50, 143
               

               
Conread position:
               
50-335
               

               
Cow position:
               
chr11:12111322-12111596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
75, 34
               

               
Conread position:
               
51-181
               

               
Cow position:
               
chr11:74839759-74839624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
51-200
               

               
Cow position:
               
chr11:33368227-33368078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
51-210
               

               
Cow position:
               
chr11:86895525-86895362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 141
               

               
Conread position:
               
51-211
               

               
Cow position:
               
chr11:33993307-33993149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
75, 35
               

               
Conread position:
               
51-215
               

               
Cow position:
               
chr11:17517555-17517379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
41, 149
               

               
Conread position:
               
51-218
               

               
Cow position:
               
chr11:84764175-84764014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
71, 49
               

               
Conread position:
               
51-225
               

               
Cow position:
               
chr11:55053019-55052842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
51-229
               

               
Cow position:
               
chr11:21885986-21885799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 115
               

               
Conread position:
               
51-233
               

               
Cow position:
               
chr11:35109384-35109576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
40, 147
               

               
Conread position:
               
51-244
               

               
Cow position:
               
chr11:33409110-33409310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 144
               

               
Conread position:
               
51-263
               

               
Cow position:
               
chr11:37435834-37436050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 146
               

               
Conread position:
               
51-268
               

               
Cow position:
               
chr11:4637022-4637250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
41, 142
               

               
Conread position:
               
51-271
               

               
Cow position:
               
chr11:84890575-84890800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
75, 49
               

               
Conread position:
               
51-284
               

               
Cow position:
               
chr11:62812799-62813045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
48, 143
               

               
Conread position:
               
51-293
               

               
Cow position:
               
chr11:31228110-31227864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
51-294
               

               
Cow position:
               
chr11:30494144-30493893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 134
               

               
Conread position:
               
51-295
               

               
Cow position:
               
chr11:66518632-66518384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 24
               

               
Conread position:
               
51-312
               

               
Cow position:
               
chr11:36658677-36658944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
51-313
               

               
Cow position:
               
chr11:41215886-41215618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
51-314
               

               
Cow position:
               
chr11:27719189-27719448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
177, 62
               

               
Conread position:
               
51-314
               

               
Cow position:
               
chr11:65826598-65826867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
34, 145
               

               
Conread position:
               
51-319
               

               
Cow position:
               
chr11:19591840-19592121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
42, 147
               

               
Conread position:
               
51-319
               

               
Cow position:
               
chr11:69978121-69977847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
51-319
               

               
Cow position:
               
chr11:76890200-76889919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
38, 147
               

               
Conread position:
               
51-324
               

               
Cow position:
               
chr11:2907378-2907654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
51-324
               

               
Cow position:
               
chr11:11469500-11469771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 140
               

               
Conread position:
               
51-324
               

               
Cow position:
               
chr11:84385484-84385772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
43, 147
               

               
Conread position:
               
51-331
               

               
Cow position:
               
chr11:45646440-45646737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
43, 144
               

               
Conread position:
               
52-271
               

               
Cow position:
               
chr11:67912010-67912232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
52-271
               

               
Cow position:
               
chr11:72871054-72870821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
52-296
               

               
Cow position:
               
chr11:30211042-30210799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
52-313
               

               
Cow position:
               
chr11:77546553-77546294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
7, 54
               

               
Conread position:
               
52-315
               

               
Cow position:
               
chr11:30830466-30830742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
49, 140
               

               
Conread position:
               
52-319
               

               
Cow position:
               
chr11:49934591-49934867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
74, 51
               

               
Conread position:
               
52-327
               

               
Cow position:
               
chr11:26143942-26144234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
39, 146
               

               
Conread position:
               
53-160
               

               
Cow position:
               
chr11:2310218-2310110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 45
               

               
Conread position:
               
53-190
               

               
Cow position:
               
chr11:84968518-84968381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
73, 33
               

               
Conread position:
               
53-226
               

               
Cow position:
               
chr11:42159909-42160084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 131
               

               
Conread position:
               
53-269
               

               
Cow position:
               
chr11:64048543-64048328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 46
               

               
Conread position:
               
53-317
               

               
Cow position:
               
chr11:8988085-8988357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 114
               

               
Conread position:
               
53-319
               

               
Cow position:
               
chr11:66188168-66188451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
37, 141
               

               
Conread position:
               
53-324
               

               
Cow position:
               
chr11:18572934-18572666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
53-324
               

               
Cow position:
               
chr11:33348043-33348319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 135
               

               
Conread position:
               
53-339
               

               
Cow position:
               
chr11:30209670-30209972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
38, 130
               

               
Conread position:
               
54-327
               

               
Cow position:
               
chr11:40459260-40458977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
44, 151
               

               
Conread position:
               
55-213
               

               
Cow position:
               
chr11:74379015-74378857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
55-214
               

               
Cow position:
               
chr11:63382048-63382209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 134
               

               
Conread position:
               
55-318
               

               
Cow position:
               
chr11:41549184-41549465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
48, 142
               

               
Conread position:
               
55-324
               

               
Cow position:
               
chr11:77758612-77758891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
55-327
               

               
Cow position:
               
chr11:13500163-13499878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
43, 139
               

               
Conread position:
               
55-328
               

               
Cow position:
               
chr11:63065802-63065521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 142
               

               
Conread position:
               
56-206
               

               
Cow position:
               
chr11:19549627-19549474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 102
               

               
Conread position:
               
56-270
               

               
Cow position:
               
chr11:35926760-35926985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 124
               

               
Conread position:
               
56-271
               

               
Cow position:
               
chr11:22747187-22747409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
18, 132
               

               
Conread position:
               
57-319
               

               
Cow position:
               
chr11:17321786-17321530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
57-324
               

               
Cow position:
               
chr11:4436455-4436191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
57-324
               

               
Cow position:
               
chr11:69076053-69075773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 135
               

               
Conread position:
               
57-325
               

               
Cow position:
               
chr11:6233731-6234015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
39, 147
               

               
Conread position:
               
57-329
               

               
Cow position:
               
chr11:41293676-41293958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
31, 134
               

               
Conread position:
               
58-233
               

               
Cow position:
               
chr11:36920428-36920616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
58-236
               

               
Cow position:
               
chr11:35669811-35669993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
43, 87
               

               
Conread position:
               
58-236
               

               
Cow position:
               
chr11:80616370-80616202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
67, 42
               

               
Conread position:
               
58-277
               

               
Cow position:
               
chr11:35536730-35536501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
42, 121
               

               
Conread position:
               
58-303
               

               
Cow position:
               
chr11:13040036-13040272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
58-312
               

               
Cow position:
               
chr11:372559-372818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
62, 138
               

               
Conread position:
               
58-314
               

               
Cow position:
               
chr11:43430311-43430578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
58-318
               

               
Cow position:
               
chr11:4662908-4663175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 56
               

               
Conread position:
               
58-319
               

               
Cow position:
               
chr11:9270588-9270856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
58-319
               

               
Cow position:
               
chr11:82940480-82940751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
58-324
               

               
Cow position:
               
chr11:32693339-32693606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 108
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr11:67804891-67804616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
63, 33
               

               
Conread position:
               
58-328
               

               
Cow position:
               
chr11:36112564-36112287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
42, 133
               

               
Conread position:
               
59-236
               

               
Cow position:
               
chr11:84977220-84977400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
64, 131
               

               
Conread position:
               
59-238
               

               
Cow position:
               
chr11:15958438-15958267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
70, 40
               

               
Conread position:
               
59-271
               

               
Cow position:
               
chr11:70826086-70825871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
59-326
               

               
Cow position:
               
chr11:20602363-20602092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 48
               

               
Conread position:
               
59-328
               

               
Cow position:
               
chr11:83926185-83925911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
60-329
               

               
Cow position:
               
chr11:23137914-23138197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
13, 140
               

               
Conread position:
               
60-338
               

               
Cow position:
               
chr11:48306223-48306493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
157, 39
               

               
Conread position:
               
61-233
               

               
Cow position:
               
chr11:73983867-73984042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
51, 7
               

               
Conread position:
               
61-259
               

               
Cow position:
               
chr11:71111022-71110825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
61-311
               

               
Cow position:
               
chr11:14466349-14466610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
61-317
               

               
Cow position:
               
chr11:34113406-34113135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
61-319
               

               
Cow position:
               
chr11:63909532-63909787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
62-317
               

               
Cow position:
               
chr11:16906916-16907172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
44, 22
               

               
Conread position:
               
62-327
               

               
Cow position:
               
chr11:29946781-29947069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
63-239
               

               
Cow position:
               
chr11:62754185-62754363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
64-324
               

               
Cow position:
               
chr11:70086467-70086193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
37, 5
               

               
Conread position:
               
65-189
               

               
Cow position:
               
chr11:61178491-61178363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
65-317
               

               
Cow position:
               
chr11:30787356-30787088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 24
               

               
Conread position:
               
65-324
               

               
Cow position:
               
chr11:59873062-59872796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 107
               

               
Conread position:
               
66-189
               

               
Cow position:
               
chr11:35860712-35860588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 108
               

               
Conread position:
               
66-230
               

               
Cow position:
               
chr11:19606709-19606543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
11, 124
               

               
Conread position:
               
66-232
               

               
Cow position:
               
chr11:53717673-53717844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
66-239
               

               
Cow position:
               
chr11:56290642-56290467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
66-239
               

               
Cow position:
               
chr11:83579046-83579219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
66-277
               

               
Cow position:
               
chr11:19946565-19946349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
66-314
               

               
Cow position:
               
chr11:24602098-24601848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
80, 59
               

               
Conread position:
               
66-324
               

               
Cow position:
               
chr11:33341013-33341282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
66-324
               

               
Cow position:
               
chr11:44032145-44031867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
67-277
               

               
Cow position:
               
chr11:2344389-2344169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 129
               

               
Conread position:
               
68-239
               

               
Cow position:
               
chr11:897803-897629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 122
               

               
Conread position:
               
68-324
               

               
Cow position:
               
chr11:8524982-8525246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
68-324
               

               
Cow position:
               
chr11:74316842-74316577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
23, 131
               

               
Conread position:
               
69-324
               

               
Cow position:
               
chr11:2925172-2925423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 91
               

               
Conread position:
               
71-324
               

               
Cow position:
               
chr11:3393081-3393345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
73-324
               

               
Cow position:
               
chr11:13061120-13061365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
184, 34
               

               
Conread position:
               
73-324
               

               
Cow position:
               
chr11:28644212-28643949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
29, 117
               

               
Conread position:
               
73-324
               

               
Cow position:
               
chr11:38874285-38874538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
155, 34
               

               
Conread position:
               
73-324
               

               
Cow position:
               
chr11:71168470-71168725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
155, 34
               

               
Conread position:
               
74-208
               

               
Cow position:
               
chr11:70639972-70639833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
32, 118
               

               
Conread position:
               
76-228
               

               
Cow position:
               
chr11:67312900-67312747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
50, 30
               

               
Conread position:
               
76-324
               

               
Cow position:
               
chr11:22977753-22978000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
32, 113
               

               
Conread position:
               
77-226
               

               
Cow position:
               
chr11:62168211-62168361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
77-239
               

               
Cow position:
               
chr11:33697756-33697597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
78-197
               

               
Cow position:
               
chr11:46499127-46499007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
80-210
               

               
Cow position:
               
chr11:41983048-41983181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 111
               

               
Conread position:
               
80-302
               

               
Cow position:
               
chr11:72333706-72333479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 110
               

               
Conread position:
               
80-324
               

               
Cow position:
               
chr11:37804436-37804689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
22, 110
               

               
Conread position:
               
80-324
               

               
Cow position:
               
chr11:76114760-76114519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
22, 64
               

               
Conread position:
               
80-324
               

               
Cow position:
               
chr11:83687316-83687563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 110
               

               
Conread position:
               
80-329
               

               
Cow position:
               
chr11:33311095-33310833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
80-329
               

               
Cow position:
               
chr11:71868485-71868744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
22, 116
               

               
Conread position:
               
81-318
               

               
Cow position:
               
chr11:64638412-64638658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
81-331
               

               
Cow position:
               
chr11:38334639-38334384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
45, 108
               

               
Conread position:
               
82-212
               

               
Cow position:
               
chr11:18189619-18189752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
82-324
               

               
Cow position:
               
chr11:61348983-61348754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 36
               

               
Conread position:
               
83-240
               

               
Cow position:
               
chr11:18587483-18587641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
83-319
               

               
Cow position:
               
chr11:39118874-39118622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
83-324
               

               
Cow position:
               
chr11:58588458-58588212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
83-338
               

               
Cow position:
               
chr11:47772275-47772541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
19, 107
               

               
Conread position:
               
86-314
               

               
Cow position:
               
chr11:34032090-34032327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
86-316
               

               
Cow position:
               
chr11:83033128-83033363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
86-322
               

               
Cow position:
               
chr11:40608483-40608731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 89
               

               
Conread position:
               
86-324
               

               
Cow position:
               
chr11:44636643-44636893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
87-186
               

               
Cow position:
               
chr11:2284754-2284652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
87-189
               

               
Cow position:
               
chr11:56895865-56895969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
87-202
               

               
Cow position:
               
chr11:59916256-59916140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 114
               

               
Conread position:
               
87-204
               

               
Cow position:
               
chr11:30306539-30306419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
87-208
               

               
Cow position:
               
chr11:30805024-30805145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
87-211
               

               
Cow position:
               
chr11:71767712-71767586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
87-231
               

               
Cow position:
               
chr11:58173735-58173589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
15, 86
               

               
Conread position:
               
87-233
               

               
Cow position:
               
chr11:18608134-18608276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
141, 22
               

               
Conread position:
               
87-243
               

               
Cow position:
               
chr11:82289689-82289533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 99
               

               
Conread position:
               
87-244
               

               
Cow position:
               
chr11:17721692-17721853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
87-244
               

               
Cow position:
               
chr11:34692964-34692804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 103
               

               
Conread position:
               
87-256
               

               
Cow position:
               
chr11:56575650-56575824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
15, 106
               

               
Conread position:
               
87-277
               

               
Cow position:
               
chr11:62778552-62778360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
87-295
               

               
Cow position:
               
chr11:26845484-26845701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
87-298
               

               
Cow position:
               
chr11:5789789-5790000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 103
               

               
Conread position:
               
87-303
               

               
Cow position:
               
chr11:50073048-50072834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 102
               

               
Conread position:
               
87-309
               

               
Cow position:
               
chr11:6202555-6202326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 105
               

               
Conread position:
               
87-312
               

               
Cow position:
               
chr11:54334439-54334210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
15, 103
               

               
Conread position:
               
87-314
               

               
Cow position:
               
chr11:63847955-63847723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
87-314
               

               
Cow position:
               
chr11:67747390-67747159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
87-314
               

               
Cow position:
               
chr11:79728557-79728794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 112
               

               
Conread position:
               
87-316
               

               
Cow position:
               
chr11:72375565-72375813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
20, 110
               

               
Conread position:
               
87-319
               

               
Cow position:
               
chr11:33753801-33754033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
87-319
               

               
Cow position:
               
chr11:34963180-34962932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
21, 88
               

               
Conread position:
               
87-319
               

               
Cow position:
               
chr11:47004454-47004217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
141, 31
               

               
Conread position:
               
87-319
               

               
Cow position:
               
chr11:60470088-60470308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
87-319
               

               
Cow position:
               
chr11:63917366-63917596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
87-320
               

               
Cow position:
               
chr11:30955111-30954867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
87-321
               

               
Cow position:
               
chr11:6633821-6633579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
15, 103
               

               
Conread position:
               
87-321
               

               
Cow position:
               
chr11:40573225-40573465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
87-324
               

               
Cow position:
               
chr11:7590299-7590058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
87-324
               

               
Cow position:
               
chr11:11125773-11125527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
87-324
               

               
Cow position:
               
chr11:33414347-33414102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
87-324
               

               
Cow position:
               
chr11:38577668-38577907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
87-324
               

               
Cow position:
               
chr11:48272311-48272062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 103
               

               
Conread position:
               
87-324
               

               
Cow position:
               
chr11:59702600-59702351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
39, 112
               

               
Conread position:
               
87-324
               

               
Cow position:
               
chr11:77750663-77750907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
38, 79
               

               
Conread position:
               
87-327
               

               
Cow position:
               
chr11:40478742-40478988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
87-327
               

               
Cow position:
               
chr11:59024250-59024492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
87-329
               

               
Cow position:
               
chr11:64089986-64090224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 103
               

               
Conread position:
               
87-330
               

               
Cow position:
               
chr11:23586749-23586496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
21, 103
               

               
Conread position:
               
87-332
               

               
Cow position:
               
chr11:17831112-17831360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
87-336
               

               
Cow position:
               
chr11:70838179-70838438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
87-339
               

               
Cow position:
               
chr11:18086237-18086484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
88-226
               

               
Cow position:
               
chr11:46427298-46427438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 101
               

               
Conread position:
               
88-231
               

               
Cow position:
               
chr11:58938635-58938781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
14, 102
               

               
Conread position:
               
88-232
               

               
Cow position:
               
chr11:30355168-30355023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 102
               

               
Conread position:
               
88-270
               

               
Cow position:
               
chr11:79018949-79019138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 108
               

               
Conread position:
               
88-271
               

               
Cow position:
               
chr11:31885832-31885639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 183
               

               
Conread position:
               
88-303
               

               
Cow position:
               
chr11:69307621-69307392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
88-314
               

               
Cow position:
               
chr11:63482321-63482551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
38, 97
               

               
Conread position:
               
88-318
               

               
Cow position:
               
chr11:4207418-4207183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
88-319
               

               
Cow position:
               
chr11:17278566-17278794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
14, 98
               

               
Conread position:
               
88-319
               

               
Cow position:
               
chr11:21894053-21894282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
88-321
               

               
Cow position:
               
chr11:45435189-45434954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
38, 112
               

               
Conread position:
               
88-324
               

               
Cow position:
               
chr11:30476108-30475868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
14, 137
               

               
Conread position:
               
88-324
               

               
Cow position:
               
chr11:32436442-32436198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 59
               

               
Conread position:
               
88-324
               

               
Cow position:
               
chr11:48474813-48474568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
17, 102
               

               
Conread position:
               
88-324
               

               
Cow position:
               
chr11:70609906-70609651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
37, 74
               

               
Conread position:
               
88-327
               

               
Cow position:
               
chr11:71501024-71501270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
88-329
               

               
Cow position:
               
chr11:61958635-61958882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
88-339
               

               
Cow position:
               
chr11:41809383-41809626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 109
               

               
Conread position:
               
89-211
               

               
Cow position:
               
chr11:74720832-74720709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
37, 99
               

               
Conread position:
               
89-232
               

               
Cow position:
               
chr11:81728540-81728684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 100
               

               
Conread position:
               
89-243
               

               
Cow position:
               
chr11:84498846-84498999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
89-244
               

               
Cow position:
               
chr11:82730889-82731048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
89-251
               

               
Cow position:
               
chr11:44017083-44016918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 100
               

               
Conread position:
               
89-294
               

               
Cow position:
               
chr11:71341356-71341571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
89-319
               

               
Cow position:
               
chr11:80530465-80530238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
89-321
               

               
Cow position:
               
chr11:1070982-1071225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
89-341
               

               
Cow position:
               
chr11:34829677-34829933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
90-205
               

               
Cow position:
               
chr11:37923378-37923262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 99
               

               
Conread position:
               
90-210
               

               
Cow position:
               
chr11:47585955-47586073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
90-226
               

               
Cow position:
               
chr11:58022308-58022444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
90-238
               

               
Cow position:
               
chr11:48063695-48063842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
36, 17
               

               
Conread position:
               
90-250
               

               
Cow position:
               
chr11:71934849-71935010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
90-271
               

               
Cow position:
               
chr11:4652865-4653057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
12, 100
               

               
Conread position:
               
90-303
               

               
Cow position:
               
chr11:47837427-47837201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
12, 100
               

               
Conread position:
               
90-318
               

               
Cow position:
               
chr11:45897941-45898182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
90-320
               

               
Cow position:
               
chr11:36238885-36238652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
12, 91
               

               
Conread position:
               
90-324
               

               
Cow position:
               
chr11:85294347-85294111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
90-334
               

               
Cow position:
               
chr11:71807459-71807716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
91-215
               

               
Cow position:
               
chr11:84775180-84775055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 98
               

               
Conread position:
               
91-245
               

               
Cow position:
               
chr11:21910521-21910677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
91-252
               

               
Cow position:
               
chr11:62609711-62609549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
91-309
               

               
Cow position:
               
chr11:56654662-56654429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
91-324
               

               
Cow position:
               
chr11:5031670-5031909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 94
               

               
Conread position:
               
91-324
               

               
Cow position:
               
chr11:62155745-62155491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 105
               

               
Conread position:
               
92-215
               

               
Cow position:
               
chr11:15682874-15682999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
92-291
               

               
Cow position:
               
chr11:80412909-80413114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
92-312
               

               
Cow position:
               
chr11:33345551-33345320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
14, 98
               

               
Conread position:
               
92-314
               

               
Cow position:
               
chr11:23232416-23232641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
92-320
               

               
Cow position:
               
chr11:43898244-43898009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
93-236
               

               
Cow position:
               
chr11:81931012-81931153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 93
               

               
Conread position:
               
93-278
               

               
Cow position:
               
chr11:3283128-3282948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 88
               

               
Conread position:
               
93-319
               

               
Cow position:
               
chr11:64867917-64868145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
93-324
               

               
Cow position:
               
chr11:15373944-15373717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
9, 104
               

               
Conread position:
               
93-324
               

               
Cow position:
               
chr11:36799203-36799436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
11, 96
               

               
Conread position:
               
94-277
               

               
Cow position:
               
chr11:32398738-32398550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
32, 43
               

               
Conread position:
               
94-314
               

               
Cow position:
               
chr11:5201549-5201765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
94-324
               

               
Cow position:
               
chr11:35684398-35684630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 91
               

               
Conread position:
               
94-324
               

               
Cow position:
               
chr11:48650074-48649846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
94-324
               

               
Cow position:
               
chr11:73512342-73512566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
28, 12
               

               
Conread position:
               
94-331
               

               
Cow position:
               
chr11:31506952-31506702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
96-277
               

               
Cow position:
               
chr11:7013646-7013830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 17
               

               
Conread position:
               
96-319
               

               
Cow position:
               
chr11:377541-377774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
30, 93
               

               
Conread position:
               
96-319
               

               
Cow position:
               
chr11:3234177-3233955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
6, 94
               

               
Conread position:
               
96-324
               

               
Cow position:
               
chr11:8147798-8148032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 89
               

               
Conread position:
               
96-349
               

               
Cow position:
               
chr11:249382-249639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
98-238
               

               
Cow position:
               
chr11:81762955-81762821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
98-299
               

               
Cow position:
               
chr11:9221633-9221838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
99-313
               

               
Cow position:
               
chr11:6194303-6194081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
99-314
               

               
Cow position:
               
chr11:1157741-1157520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
99-324
               

               
Cow position:
               
chr11:25387166-25386928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
99-327
               

               
Cow position:
               
chr11:46953045-46952813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 89
               

               
Conread position:
               
99-329
               

               
Cow position:
               
chr11:61454419-61454667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
100-313
               

               
Cow position:
               
chr11:56518215-56518433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
128, 87
               

               
Conread position:
               
100-314
               

               
Cow position:
               
chr11:64905094-64904872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 88
               

               
Conread position:
               
100-324
               

               
Cow position:
               
chr11:58400345-58400127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 85
               

               
Conread position:
               
101-206
               

               
Cow position:
               
chr11:41980109-41980215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
101-215
               

               
Cow position:
               
chr11:42056202-42056087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
101-296
               

               
Cow position:
               
chr11:46999074-46998877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
101-318
               

               
Cow position:
               
chr11:1362372-1362605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
101-324
               

               
Cow position:
               
chr11:23128444-23128678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
101-324
               

               
Cow position:
               
chr11:80761282-80761514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 76
               

               
Conread position:
               
101-326
               

               
Cow position:
               
chr11:45742469-45742246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
101-336
               

               
Cow position:
               
chr11:42359215-42358971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
102-215
               

               
Cow position:
               
chr11:32782789-32782903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
24, 86
               

               
Conread position:
               
102-300
               

               
Cow position:
               
chr11:42043902-42044101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
102-325
               

               
Cow position:
               
chr11:76606767-76606542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
24, 86
               

               
Conread position:
               
104-233
               

               
Cow position:
               
chr11:61130574-61130703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
104-314
               

               
Cow position:
               
chr11:67246878-67246667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
105-272
               

               
Cow position:
               
chr11:33527144-33526972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
105-324
               

               
Cow position:
               
chr11:36987041-36986831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
105-331
               

               
Cow position:
               
chr11:70745443-70745669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
83, 18
               

               
Conread position:
               
106-330
               

               
Cow position:
               
chr11:35873912-35874133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
109-324
               

               
Cow position:
               
chr11:3833276-3833488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
17, 36
               
UCSC Genome Browser

               
Conread position:
               
113-243
               

               
Cow position:
               
chr11:34106586-34106720 (view  custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
13, 76
               
UCSC Genome Browser

               
               
               
Conread position:
113-324

               
               
               
Cow position:
chr11:35363565-35363363 (view  custom track)

               
               
               
Alignm length:
214

               
               
               
Alignm identity:
153

               
               
               
Alignm E-value:
1e-24

               
               
               
Alignm gaps (pig, cow):
13, 76
UCSC Genome Browser

               
               
               
Conread position:
113-329

               
               
               
Cow position:
chr11:21438292-21438075 (view  custom track)

               
               
               
Alignm length:
224

               
               
               
Alignm identity:
163

               
               
               
Alignm E-value:
2e-29

               
               
               
Alignm gaps (pig, cow):
13, 82

               
               
               Conread position:124-324
               
               
               Cow position:chr11:7497576-7497778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 69

               
               
               Conread position:124-335
               
               
               Cow position:chr11:16261954-16262173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):104, 62

               
               
               Conread position:125-262
               
               
               Cow position:chr11:71482449-71482309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 62

               
               
               Conread position:125-296
               
               
               Cow position:chr11:75965582-75965757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):103, 62

               
               
               Conread position:125-329
               
               
               Cow position:chr11:7395199-7395006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:125-330
               
               
               Cow position:chr11:52983745-52983541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):103, 69

               
               
               Conread position:126-319
               
               
               Cow position:chr11:70273375-70273175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 61

               
               
               Conread position:126-327
               
               
               Cow position:chr11:40794283-40794489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:126-332
               
               
               Cow position:chr11:41175880-41176091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):102, 68

               
               
               Conread position:126-333
               
               
               Cow position:chr11:60143233-60143442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:127-314
               
               
               Cow position:chr11:36286763-36286571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 60

               
               
               Conread position:127-328
               
               
               Cow position:chr11:40258344-40258547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):90, 47

               
               
               Conread position:127-328
               
               
               Cow position:chr11:62880564-62880763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:129-271
               
               
               Cow position:chr11:55203394-55203539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):87, 57

               
               
               Conread position:129-327
               
               
               Cow position:chr11:8496098-8495904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):90, 58

               
               
               Conread position:130-311
               
               
               Cow position:chr11:8462069-8461893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):85, 57

               
               
               Conread position:130-319
               
               
               Cow position:chr11:41811850-41812038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 53

               
               
               Conread position:130-324
               
               
               Cow position:chr11:35791757-35791947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):145, 57

               
               
               Conread position:130-327
               
               
               Cow position:chr11:3726351-3726150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:130-327
               
               
               Cow position:chr11:9463900-9463696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:130-327
               
               
               Cow position:chr11:33286892-33287088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 63

               
               
               Conread position:130-327
               
               
               Cow position:chr11:34616324-34616132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:130-331
               
               
               Cow position:chr11:80787842-80788048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 56

               
               
               Conread position:131-327
               
               
               Cow position:chr11:4732406-4732204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 62

               
               
               Conread position:133-294
               
               
               Cow position:chr11:61858841-61859008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):95, 54

               
               
               Conread position:135-338
               
               
               Cow position:chr11:42002888-42003090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):93, 58

               
               
               Conread position:136-324
               
               
               Cow position:chr11:38670740-38670548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:137-327
               
               
               Cow position:chr11:30721156-30720959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):91, 56

               
               
               Conread position:137-327
               
               
               Cow position:chr11:44819151-44818964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):136, 56

               
               
               Conread position:138-325
               
               
               Cow position:chr11:18340984-18341177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 55

               
               
               Conread position:145-314
               
               
               Cow position:chr11:30597043-30596862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 48

               
               
               Conread position:152-327
               
               
               Cow position:chr11:83000487-83000673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 6

               
               
               Conread position:153-314
               
               
               Cow position:chr11:48697486-48697324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:155-317
               
               
               Cow position:chr11:2811690-2811857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:156-324
               
               
               Cow position:chr11:57170791-57170965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:156-328
               
               
               Cow position:chr11:48041994-48042175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:158-318
               
               
               Cow position:chr11:27386302-27386471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:162-322
               
               
               Cow position:chr11:18210315-18210479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:165-324
               
               
               Cow position:chr11:21427963-21428128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:175-319
               
               
               Cow position:chr11:83196517-83196368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:197-329
               
               
               Cow position:chr11:63516826-63516686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 0
Show alignments to all cow chromosomes.