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Cow genome map

           
Conread name:
           
Pig2-106O01
        

               
Conread position:
               
1-141
               

               
Cow position:
               
chr1:26934800-26934656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
56, 61
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr1:2317902-2317737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:32631207-32631371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
148, 102
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:68912492-68912744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
167, 106
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:73522403-73522142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
104, 186
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:30034283-30034545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:78783283-78783574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 220
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:61735702-61735361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
25, 203
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:90864563-90864219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
25, 65
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:91817036-91816697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr1:89937626-89937291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
30, 165
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr1:42968577-42968238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr1:63391035-63390686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr1:92437254-92436901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 188
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr1:40599789-40600138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
155, 97
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr1:23488776-23488401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
25, 231
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr1:81355966-81355597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 128
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr1:88652368-88652742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
31, 218
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr1:97954711-97954362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 107
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr1:73546178-73545802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
25, 205
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr1:64678434-64678805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
25, 185
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr1:89510195-89509804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
23, 210
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr1:94211971-94212343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 206
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr1:2075591-2075234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:22730499-22730852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:47658092-47658464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:72304634-72304271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 158
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr1:1877764-1878141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 164
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr1:34300811-34300430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
25, 125
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr1:8359-8737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
25, 125
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr1:10778311-10778685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr1:34159569-34159958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 202
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr1:56228991-56229361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr1:82880402-82880766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr1:100800094-100800473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr1:101792362-101792001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
24, 151
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr1:84240637-84241004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr1:41056421-41056804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr1:81613122-81613518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 222
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chr1:11226508-11226118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
32, 194
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:18937096-18936707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 189
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:21508128-21508524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:24133318-24132931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
30, 101
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:25383396-25383799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
19, 209
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:42256773-42256371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:54207079-54206687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:56225214-56225601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:73960437-73960831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
25, 233
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:80988083-80988477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
25, 313
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:98551454-98551850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 73
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr1:13637930-13637531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
148, 106
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr1:95176672-95177070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
25, 197
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr1:69264559-69264942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr1:52039374-52039773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 203
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr1:62964016-62964415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr1:72069090-72068684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 91
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr1:12222868-12222456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
2-321
               

               
Cow position:
               
chr1:57305569-57305888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
11, 158
               

               
Conread position:
               
2-333
               

               
Cow position:
               
chr1:11772343-11772005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
30, 161
               

               
Conread position:
               
2-343
               

               
Cow position:
               
chr1:4374600-4374246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
30, 209
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr1:41181579-41181944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
30, 101
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr1:72286311-72285952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
2-369
               

               
Cow position:
               
chr1:82936844-82936479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
24, 110
               

               
Conread position:
               
2-373
               

               
Cow position:
               
chr1:84255493-84255889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
22, 14
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr1:42887523-42887146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 108
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr1:86113675-86113268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
29, 89
               

               
Conread position:
               
3-326
               

               
Cow position:
               
chr1:96478435-96478774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr1:68845742-68845393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chr1:80899847-80900225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 356
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chr1:89349716-89350071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
21, 144
               

               
Conread position:
               
3-368
               

               
Cow position:
               
chr1:21787065-21787453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
22, 163
               

               
Conread position:
               
3-370
               

               
Cow position:
               
chr1:72035190-72034807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
29, 65
               

               
Conread position:
               
3-372
               

               
Cow position:
               
chr1:21577544-21577927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
28, 227
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chr1:41252664-41252288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 201
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chr1:39510303-39509933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
98, 42
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr1:52435009-52435400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
23, 221
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chr1:33997173-33996793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
23, 167
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chr1:53369809-53370214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 231
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chr1:78810775-78811170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 202
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chr1:81290257-81290636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chr1:102266530-102266138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
22, 107
               

               
Conread position:
               
4-366
               

               
Cow position:
               
chr1:37309764-37309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 34
               

               
Conread position:
               
4-372
               

               
Cow position:
               
chr1:74084449-74084070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr1:61884655-61885033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
4-376
               

               
Cow position:
               
chr1:65103375-65103740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
4-381
               

               
Cow position:
               
chr1:57576023-57575633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
4-382
               

               
Cow position:
               
chr1:34856889-34856497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
5-372
               

               
Cow position:
               
chr1:31934254-31934628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
5-372
               

               
Cow position:
               
chr1:39069210-39068835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 107
               

               
Conread position:
               
6-333
               

               
Cow position:
               
chr1:46693914-46693573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 58
               

               
Conread position:
               
6-370
               

               
Cow position:
               
chr1:42555012-42555382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
6-370
               

               
Cow position:
               
chr1:97231718-97232079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
6-372
               

               
Cow position:
               
chr1:16767343-16766967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
20, 242
               

               
Conread position:
               
6-373
               

               
Cow position:
               
chr1:54258309-54258688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 105
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr1:89742270-89741865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 214
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr1:90868694-90868317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
6-382
               

               
Cow position:
               
chr1:22728789-22729187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
20, 350
               

               
Conread position:
               
6-382
               

               
Cow position:
               
chr1:48731086-48730702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
19, 58
               

               
Conread position:
               
6-382
               

               
Cow position:
               
chr1:84812194-84811809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
6-383
               

               
Cow position:
               
chr1:94226806-94226423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 120
               

               
Conread position:
               
6-385
               

               
Cow position:
               
chr1:79165350-79164960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 227
               

               
Conread position:
               
7-373
               

               
Cow position:
               
chr1:100551713-100552097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
13, 118
               

               
Conread position:
               
8-373
               

               
Cow position:
               
chr1:29935637-29935266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 154
               

               
Conread position:
               
8-382
               

               
Cow position:
               
chr1:45555106-45555496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 220
               

               
Conread position:
               
9-403
               

               
Cow position:
               
chr1:70380401-70379991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
16, 270
               

               
Conread position:
               
10-315
               

               
Cow position:
               
chr1:54199634-54199316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
11-351
               

               
Cow position:
               
chr1:39427234-39426906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
11-366
               

               
Cow position:
               
chr1:95215439-95215075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
14, 164
               

               
Conread position:
               
12-280
               

               
Cow position:
               
chr1:11770545-11770264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 209
               

               
Conread position:
               
20-373
               

               
Cow position:
               
chr1:71079194-71078839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
21-358
               

               
Cow position:
               
chr1:7350298-7350654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
7, 204
               

               
Conread position:
               
21-358
               

               
Cow position:
               
chr1:85162787-85162441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
85, 138
               

               
Conread position:
               
21-362
               

               
Cow position:
               
chr1:19482314-19481971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 89
               

               
Conread position:
               
21-370
               

               
Cow position:
               
chr1:53308632-53308275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
21-373
               

               
Cow position:
               
chr1:52994784-52995148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 167
               

               
Conread position:
               
21-381
               

               
Cow position:
               
chr1:56477355-56477722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
128, 82
               

               
Conread position:
               
21-382
               

               
Cow position:
               
chr1:75744620-75744993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
7, 137
               

               
Conread position:
               
24-370
               

               
Cow position:
               
chr1:54478089-54478448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 7
               

               
Conread position:
               
24-370
               

               
Cow position:
               
chr1:100705896-100706245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
125, 103
               

               
Conread position:
               
27-356
               

               
Cow position:
               
chr1:81563500-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
27-370
               

               
Cow position:
               
chr1:48580897-48581247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
9, 96
               

               
Conread position:
               
27-382
               

               
Cow position:
               
chr1:3924027-3923669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
129, 50
               

               
Conread position:
               
27-394
               

               
Cow position:
               
chr1:81569268-81568884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
81, 174
               

               
Conread position:
               
28-272
               

               
Cow position:
               
chr1:55135604-55135851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
123, 17
               

               
Conread position:
               
28-289
               

               
Cow position:
               
chr1:95017745-95017492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
149, 20
               

               
Conread position:
               
28-326
               

               
Cow position:
               
chr1:70297039-70297352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
63, 200
               

               
Conread position:
               
28-364
               

               
Cow position:
               
chr1:51531541-51531862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 59
               

               
Conread position:
               
28-369
               

               
Cow position:
               
chr1:10632821-10633164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
128, 80
               

               
Conread position:
               
28-370
               

               
Cow position:
               
chr1:70538371-70538730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
28-370
               

               
Cow position:
               
chr1:91800838-91800480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
80, 197
               

               
Conread position:
               
28-370
               

               
Cow position:
               
chr1:92963166-92963508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
121, 191
               

               
Conread position:
               
28-373
               

               
Cow position:
               
chr1:71253787-71253434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
81, 166
               

               
Conread position:
               
28-382
               

               
Cow position:
               
chr1:10942324-10941964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
122, 94
               

               
Conread position:
               
28-382
               

               
Cow position:
               
chr1:10964062-10964422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
122, 94
               

               
Conread position:
               
28-382
               

               
Cow position:
               
chr1:24534475-24534125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
128, 73
               

               
Conread position:
               
28-382
               

               
Cow position:
               
chr1:44506736-44507092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 32
               

               
Conread position:
               
28-382
               

               
Cow position:
               
chr1:55229752-55230107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
136, 198
               

               
Conread position:
               
28-382
               

               
Cow position:
               
chr1:80422069-80422403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
28-382
               

               
Cow position:
               
chr1:97611885-97611526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
178, 165
               

               
Conread position:
               
28-383
               

               
Cow position:
               
chr1:71119279-71119651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
81, 57
               

               
Conread position:
               
28-385
               

               
Cow position:
               
chr1:43389280-43388918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
125, 103
               

               
Conread position:
               
28-387
               

               
Cow position:
               
chr1:74822219-74822587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
80, 133
               

               
Conread position:
               
28-392
               

               
Cow position:
               
chr1:1981342-1980974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
128, 80
               

               
Conread position:
               
28-394
               

               
Cow position:
               
chr1:53520674-53521059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
95, 200
               

               
Conread position:
               
29-369
               

               
Cow position:
               
chr1:5135922-5135591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
72, 9
               

               
Conread position:
               
30-369
               

               
Cow position:
               
chr1:64804338-64803984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
79, 177
               

               
Conread position:
               
30-377
               

               
Cow position:
               
chr1:1165371-1165724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
78, 191
               

               
Conread position:
               
31-356
               

               
Cow position:
               
chr1:56634869-56635202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
118, 96
               

               
Conread position:
               
31-372
               

               
Cow position:
               
chr1:42138637-42138979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
31-373
               

               
Cow position:
               
chr1:83583167-83582811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
78, 138
               

               
Conread position:
               
31-379
               

               
Cow position:
               
chr1:88618364-88618723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
78, 99
               

               
Conread position:
               
31-379
               

               
Cow position:
               
chr1:89076865-89076505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
78, 41
               

               
Conread position:
               
31-394
               

               
Cow position:
               
chr1:89381049-89381419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 55
               

               
Conread position:
               
32-333
               

               
Cow position:
               
chr1:1185511-1185810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
69, 188
               

               
Conread position:
               
32-373
               

               
Cow position:
               
chr1:52052932-52052595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
199, 101
               

               
Conread position:
               
32-380
               

               
Cow position:
               
chr1:874415-874783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
76, 48
               

               
Conread position:
               
32-387
               

               
Cow position:
               
chr1:96964092-96964452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
122, 111
               

               
Conread position:
               
33-341
               

               
Cow position:
               
chr1:7186560-7186877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
68, 143
               

               
Conread position:
               
33-373
               

               
Cow position:
               
chr1:6941238-6941590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 187
               

               
Conread position:
               
33-373
               

               
Cow position:
               
chr1:6958651-6959003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 187
               

               
Conread position:
               
34-382
               

               
Cow position:
               
chr1:80336473-80336117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
23, 28
               

               
Conread position:
               
35-376
               

               
Cow position:
               
chr1:68854949-68855289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
132, 73
               

               
Conread position:
               
37-351
               

               
Cow position:
               
chr1:26943088-26943407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
37-372
               

               
Cow position:
               
chr1:70422077-70422425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
91, 227
               

               
Conread position:
               
38-369
               

               
Cow position:
               
chr1:49317735-49317378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
46, 201
               

               
Conread position:
               
38-381
               

               
Cow position:
               
chr1:34771726-34771373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
41-369
               

               
Cow position:
               
chr1:98461071-98461404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
67, 106
               

               
Conread position:
               
42-257
               

               
Cow position:
               
chr1:98558002-98557779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 180
               

               
Conread position:
               
42-326
               

               
Cow position:
               
chr1:85867376-85867663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
42-373
               

               
Cow position:
               
chr1:49433483-49433142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
65, 87
               

               
Conread position:
               
42-379
               

               
Cow position:
               
chr1:16962232-16961882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
67, 204
               

               
Conread position:
               
43-382
               

               
Cow position:
               
chr1:8287831-8287500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
110, 156
               

               
Conread position:
               
50-364
               

               
Cow position:
               
chr1:99512463-99512153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
117, 152
               

               
Conread position:
               
51-380
               

               
Cow position:
               
chr1:62291895-62291573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
105, 71
               

               
Conread position:
               
51-382
               

               
Cow position:
               
chr1:75382782-75383101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
57, 134
               

               
Conread position:
               
52-333
               

               
Cow position:
               
chr1:13810437-13810728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
14, 179
               

               
Conread position:
               
53-333
               

               
Cow position:
               
chr1:73682445-73682161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
25, 139
               

               
Conread position:
               
53-382
               

               
Cow position:
               
chr1:12464870-12464534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
100, 7
               

               
Conread position:
               
53-382
               

               
Cow position:
               
chr1:76613340-76613004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
53-387
               

               
Cow position:
               
chr1:62036593-62036939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 148
               

               
Conread position:
               
59-333
               

               
Cow position:
               
chr1:63138637-63138922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 166
               

               
Conread position:
               
60-325
               

               
Cow position:
               
chr1:86279214-86279486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 67
               

               
Conread position:
               
60-380
               

               
Cow position:
               
chr1:94261347-94261664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
132, 51
               

               
Conread position:
               
63-382
               

               
Cow position:
               
chr1:90976280-90975956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
95, 41
               

               
Conread position:
               
64-355
               

               
Cow position:
               
chr1:95178759-95179058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
85, 54
               

               
Conread position:
               
65-321
               

               
Cow position:
               
chr1:6788485-6788214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 164
               

               
Conread position:
               
65-367
               

               
Cow position:
               
chr1:89497770-89498062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
159, 92
               

               
Conread position:
               
65-372
               

               
Cow position:
               
chr1:21955569-21955254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
67-358
               

               
Cow position:
               
chr1:83072250-83072547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
111, 90
               

               
Conread position:
               
68-382
               

               
Cow position:
               
chr1:32001513-32001190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
71-369
               

               
Cow position:
               
chr1:71227887-71228210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
33, 256
               

               
Conread position:
               
72-372
               

               
Cow position:
               
chr1:31608087-31607768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 241
               

               
Conread position:
               
74-327
               

               
Cow position:
               
chr1:42398383-42398116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
81, 151
               

               
Conread position:
               
74-381
               

               
Cow position:
               
chr1:54156927-54156605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
29, 133
               

               
Conread position:
               
74-384
               

               
Cow position:
               
chr1:33207061-33206748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
30, 128
               

               
Conread position:
               
78-372
               

               
Cow position:
               
chr1:65318399-65318695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
81-382
               

               
Cow position:
               
chr1:20667921-20667612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
83, 74
               

               
Conread position:
               
89-372
               

               
Cow position:
               
chr1:101701818-101701526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
19, 137
               

               
Conread position:
               
90-369
               

               
Cow position:
               
chr1:42545954-42545661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
90-433
               

               
Cow position:
               
chr1:59518750-59519099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
66, 213
               

               
Conread position:
               
91-368
               

               
Cow position:
               
chr1:101632508-101632220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
76, 67
               

               
Conread position:
               
92-376
               

               
Cow position:
               
chr1:101836877-101837165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
57, 131
               

               
Conread position:
               
94-358
               

               
Cow position:
               
chr1:64572349-64572621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
94-358
               

               
Cow position:
               
chr1:77683191-77683458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
55, 128
               

               
Conread position:
               
96-382
               

               
Cow position:
               
chr1:7748053-7748344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 132
               

               
Conread position:
               
96-382
               

               
Cow position:
               
chr1:7752219-7752510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 132
               

               
Conread position:
               
98-382
               

               
Cow position:
               
chr1:3882627-3882328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
98-382
               

               
Cow position:
               
chr1:45553393-45553112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
126, 43
               

               
Conread position:
               
100-334
               

               
Cow position:
               
chr1:101946867-101946632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
100-382
               

               
Cow position:
               
chr1:31272602-31272312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
104-382
               

               
Cow position:
               
chr1:96081328-96081609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 114
               

               
Conread position:
               
108-460
               

               
Cow position:
               
chr1:87197675-87198032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
68, 49
               

               
Conread position:
               
109-385
               

               
Cow position:
               
chr1:101834673-101834950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
58, 48
               

               
Conread position:
               
111-382
               

               
Cow position:
               
chr1:23512804-23512528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
119-370
               

               
Cow position:
               
chr1:2976136-2975875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 101
               

               
Conread position:
               
120-373
               

               
Cow position:
               
chr1:47886629-47886358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
122-373
               

               
Cow position:
               
chr1:24407025-24406775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
122-408
               

               
Cow position:
               
chr1:85550216-85549923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
125-379
               

               
Cow position:
               
chr1:48769673-48769931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
128-369
               

               
Cow position:
               
chr1:72105281-72105524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
135-382
               

               
Cow position:
               
chr1:22823790-22824036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 27
               

               
Conread position:
               
141-382
               

               
Cow position:
               
chr1:80584315-80584560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
143-380
               

               
Cow position:
               
chr1:78697883-78697643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
10, 87
               

               
Conread position:
               
150-382
               

               
Cow position:
               
chr1:95153118-95153353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
152-372
               

               
Cow position:
               
chr1:92989490-92989711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 30
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr1:37726512-37726300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
166-371
               

               
Cow position:
               
chr1:45223492-45223701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 49
               

               
Conread position:
               
167-382
               

               
Cow position:
               
chr1:46030872-46031089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
167-402
               

               
Cow position:
               
chr1:43311863-43311620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
170-382
               

               
Cow position:
               
chr1:8347039-8347254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
184-369
               

               
Cow position:
               
chr1:19515683-19515501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
169, 30
               

               
Conread position:
               
187-373
               

               
Cow position:
               
chr1:98575980-98576169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
196-395
               

               
Cow position:
               
chr1:100474175-100474380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
217-382
               

               
Cow position:
               
chr1:95835834-95835667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
220-417
               

               
Cow position:
               
chr1:81481416-81481218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 166
               

               
Conread position:
               
221-382
               

               
Cow position:
               
chr1:81580147-81580308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
131, 76
               

               
Conread position:
               
226-394
               

               
Cow position:
               
chr1:6731155-6731324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
127, 26
               

               
Conread position:
               
231-394
               

               
Cow position:
               
chr1:67654341-67654177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 142
               
Show alignments to all cow chromosomes.