Cow genome map

Conread name: Pig2-106O01

Conread position: 1-258
Cow position: chr23:29471383-29471129 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 148, 120

Conread position: 1-328
Cow position: chr23:36129170-36128841 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 102

Conread position: 1-333
Cow position: chr23:10085451-10085108 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 222
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 25, 136

Conread position: 1-333
Cow position: chr23:18802541-18802192 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 25, 208

Conread position: 1-357
Cow position: chr23:3262767-3262396 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 251
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 23, 89

Conread position: 1-358
Cow position: chr23:36309159-36309523 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 254
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 31, 102

Conread position: 1-367
Cow position: chr23:30662892-30662526 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 138

Conread position: 1-369
Cow position: chr23:21336757-21336369 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 269
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 25, 110

Conread position: 1-372
Cow position: chr23:20744857-20744478 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 111

Conread position: 1-373
Cow position: chr23:2799300-2799698 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 265
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 24, 240

Conread position: 1-373
Cow position: chr23:4972518-4972884 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 266
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 35, 99

Conread position: 1-375
Cow position: chr23:13599080-13599459 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 19

Conread position: 1-381
Cow position: chr23:21789039-21788642 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 256
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 25, 125

Conread position: 1-382
Cow position: chr23:186903-187306 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 232

Conread position: 1-382
Cow position: chr23:1924101-1923710 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 222

Conread position: 1-382
Cow position: chr23:6995237-6994855 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 46

Conread position: 1-387
Cow position: chr23:11128964-11129365 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 227

Conread position: 2-358
Cow position: chr23:37065570-37065952 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 260
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 24, 230

Conread position: 2-373
Cow position: chr23:18698293-18697907 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 265
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 23, 124

Conread position: 2-373
Cow position: chr23:39778146-39778520 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 249
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 85

Conread position: 2-377
Cow position: chr23:8911211-8911584 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 261
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 24, 101

Conread position: 2-382
Cow position: chr23:533963-534355 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 268
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 30, 203

Conread position: 2-382
Cow position: chr23:1398299-1397911 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 36

Conread position: 2-382
Cow position: chr23:10554278-10553881 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 274
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 24, 44

Conread position: 3-326
Cow position: chr23:34416306-34416632 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 226
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 23, 79

Conread position: 3-370
Cow position: chr23:33711505-33711875 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 254
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 8, 54

Conread position: 5-376
Cow position: chr23:25675942-25675576 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 260
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 146, 11

Conread position: 5-382
Cow position: chr23:31493613-31493995 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 256
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 12, 118

Conread position: 6-369
Cow position: chr23:34315229-34314842 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 261
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 70, 350

Conread position: 6-381
Cow position: chr23:14739187-14739575 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 255
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 26, 203

Conread position: 6-383
Cow position: chr23:8293238-8293630 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 260
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 20, 143

Conread position: 7-372
Cow position: chr23:20388898-20388536 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 245
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 35, 70

Conread position: 7-372
Cow position: chr23:20435311-20434946 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 253
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 24, 117

Conread position: 7-382
Cow position: chr23:5617317-5617700 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 262
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 28, 218

Conread position: 7-382
Cow position: chr23:21452995-21452602 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 264
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 18, 0

Conread position: 9-369
Cow position: chr23:25864942-25864583 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 257
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 23, 115

Conread position: 10-391
Cow position: chr23:41472354-41472758 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 272
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 99, 202

Conread position: 12-360
Cow position: chr23:2417201-2417555 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 227
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 18, 111

Conread position: 16-373
Cow position: chr23:16700289-16699923 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 70

Conread position: 20-351
Cow position: chr23:4562639-4562981 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 232
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 88, 21

Conread position: 20-382
Cow position: chr23:22804476-22804852 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 257
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 10, 207

Conread position: 21-358
Cow position: chr23:7845044-7845396 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 243
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 7, 186

Conread position: 21-372
Cow position: chr23:16583154-16582792 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 257
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 9, 88

Conread position: 21-388
Cow position: chr23:14164645-14164259 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 268
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 9, 82

Conread position: 21-403
Cow position: chr23:29459333-29458948 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 266
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 102, 109

Conread position: 22-373
Cow position: chr23:1885420-1885054 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 252
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 8, 206

Conread position: 28-309
Cow position: chr23:2055465-2055758 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 81, 100

Conread position: 28-325
Cow position: chr23:29521232-29521542 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 202
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 28-349
Cow position: chr23:27996896-27997222 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 214
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 93, 144

Conread position: 28-357
Cow position: chr23:16881394-16881061 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 226
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 131, 47

Conread position: 28-373
Cow position: chr23:6244824-6244478 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 238
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 80, 172

Conread position: 28-382
Cow position: chr23:2282411-2282055 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 248
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 80, 40

Conread position: 28-382
Cow position: chr23:26986511-26986144 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 252
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 80, 62

Conread position: 29-370
Cow position: chr23:11045248-11045602 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 245
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 92, 64

Conread position: 30-350
Cow position: chr23:12050130-12050451 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 223
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 128, 157

Conread position: 30-369
Cow position: chr23:18402521-18402175 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 235
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 120, 71

Conread position: 31-274
Cow position: chr23:9595062-9594814 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 125, 33

Conread position: 31-324
Cow position: chr23:416926-417216 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 202
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 118, 164

Conread position: 31-371
Cow position: chr23:5706766-5707110 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 125

Conread position: 31-373
Cow position: chr23:15742865-15743208 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 240
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 128, 53

Conread position: 31-383
Cow position: chr23:6367371-6367729 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 249
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 77, 303

Conread position: 32-381
Cow position: chr23:4968753-4968403 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 248
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 37, 25

Conread position: 42-373
Cow position: chr23:20558082-20557726 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 235
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 66, 197

Conread position: 45-321
Cow position: chr23:19227463-19227740 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 181
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 110, 20

Conread position: 47-370
Cow position: chr23:2502067-2501738 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 234
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 102, 54

Conread position: 51-373
Cow position: chr23:18902265-18901936 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 225
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 56, 110

Conread position: 59-372
Cow position: chr23:23409540-23409850 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 218
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 105, 48

Conread position: 60-333
Cow position: chr23:24930278-24929994 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 47, 164

Conread position: 60-382
Cow position: chr23:3191329-3190997 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 222
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 95, 47

Conread position: 60-382
Cow position: chr23:4646308-4646638 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 207
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 47, 217

Conread position: 62-382
Cow position: chr23:39813302-39813627 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 222
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 18, 33

Conread position: 63-333
Cow position: chr23:16631062-16631347 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 46, 146

Conread position: 63-341
Cow position: chr23:29786555-29786260 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 198
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 37

Conread position: 68-328
Cow position: chr23:1189099-1188840 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 47, 152

Conread position: 69-358
Cow position: chr23:5426231-5426536 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 206
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 39, 135

Conread position: 71-345
Cow position: chr23:19371265-19370985 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 26, 152

Conread position: 75-320
Cow position: chr23:33569945-33570199 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 64

Conread position: 89-358
Cow position: chr23:3282291-3282019 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 182
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 54, 109

Conread position: 89-381
Cow position: chr23:4104229-4104522 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 210
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 79, 44

Conread position: 96-373
Cow position: chr23:34356468-34356759 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 53, 149

Conread position: 96-382
Cow position: chr23:1767661-1767958 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 201
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 58, 45

Conread position: 100-373
Cow position: chr23:33622317-33622031 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 193
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 101-372
Cow position: chr23:12091523-12091240 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 63, 122

Conread position: 104-379
Cow position: chr23:19774613-19774893 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 187
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 45, 118

Conread position: 108-372
Cow position: chr23:18416205-18415938 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 186
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 116

Conread position: 111-382
Cow position: chr23:39083299-39083578 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 185
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 76

Conread position: 113-382
Cow position: chr23:21502789-21502503 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 194
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 43, 108

Conread position: 113-382
Cow position: chr23:30950808-30951083 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 184
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 106

Conread position: 114-382
Cow position: chr23:37886-38155 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 188
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 83, 55

Conread position: 115-380
Cow position: chr23:5436794-5436517 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 186
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 21, 90

Conread position: 125-370
Cow position: chr23:26050896-26051154 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 97

Conread position: 135-372
Cow position: chr23:28945192-28944951 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 163
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 20, 85

Conread position: 167-382
Cow position: chr23:1655803-1656022 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 17, 49

Conread position: 167-382
Cow position: chr23:1701079-1701299 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 49

Conread position: 168-382
Cow position: chr23:39780665-39780882 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 41

Conread position: 195-380
Cow position: chr23:21309474-21309287 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 36, 19

Conread position: 201-386
Cow position: chr23:3244522-3244337 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 151, 13

Conread position: 220-382
Cow position: chr23:5881551-5881390 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 137, 13

Show alignments to all cow chromosomes.