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Cow genome map

           
Conread name:
           
Pig2-106O01
        

               
Conread position:
               
1-141
               

               
Cow position:
               
chrX:5856566-5856422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chrX:42874735-42875009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 227
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chrX:42507890-42507563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
18, 229
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chrX:2467637-2467979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chrX:31949174-31948840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chrX:21593040-21593378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 233
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chrX:7571663-7572018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chrX:23564040-23563674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
25, 249
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chrX:44737234-44736883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 162
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chrX:45404077-45403708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
31, 272
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chrX:46722984-46722617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chrX:48195284-48194918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
25, 224
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chrX:4269311-4268938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
31, 233
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chrX:21064043-21064409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chrX:18695164-18694804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 131
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chrX:42470180-42469814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
23, 110
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chrX:47481555-47481923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
16, 206
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chrX:7277684-7278044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chrX:20151607-20151990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 102
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chrX:42171542-42171162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
30, 347
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:17541721-17542099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 127
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:25035630-25035242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
32, 233
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:33466374-33466764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 98
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:34565054-34565423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
158, 41
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chrX:27705350-27705727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
150, 84
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chrX:4633095-4632713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 104
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chrX:14599290-14599674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 222
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chrX:34554487-34554865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
42, 98
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chrX:46032961-46032585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
133, 120
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chrX:161185-161554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chrX:878614-878237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chrX:11655843-11656224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
23, 166
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chrX:17725735-17726119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
153, 201
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chrX:31436237-31436617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
23, 112
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chrX:31729215-31729585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
34, 85
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chrX:40183593-40183212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 162
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chrX:44054559-44054945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chrX:40557919-40557533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 99
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chrX:43527260-43527657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
28, 232
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chrX:23583315-23583712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
25, 208
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:5872070-5872469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 218
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:8730836-8731245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
23, 320
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:12290493-12290871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 111
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:12309632-12309234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 144
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:15545654-15546033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
30, 101
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:20340134-20339742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 97
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:24366072-24365671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
29, 47
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:31489269-31489672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:34376714-34377094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:34502677-34503072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 202
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:40269233-40269646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
23, 213
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chrX:34401754-34402160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
25, 229
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chrX:35268647-35269020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chrX:38094768-38094356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chrX:45414543-45414137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
23, 228
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chrX:41879174-41878762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 227
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chrX:38007011-38006587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
28, 164
               

               
Conread position:
               
2-341
               

               
Cow position:
               
chrX:13912837-13913185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
22, 118
               

               
Conread position:
               
2-355
               

               
Cow position:
               
chrX:14221841-14222199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
104, 169
               

               
Conread position:
               
2-358
               

               
Cow position:
               
chrX:19689976-19690342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
30, 227
               

               
Conread position:
               
2-373
               

               
Cow position:
               
chrX:7695519-7695891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 96
               

               
Conread position:
               
2-373
               

               
Cow position:
               
chrX:38218473-38218859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
107, 39
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chrX:8797006-8797401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 205
               

               
Conread position:
               
2-401
               

               
Cow position:
               
chrX:34238479-34238893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 169
               

               
Conread position:
               
3-154
               

               
Cow position:
               
chrX:37364506-37364655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
3-321
               

               
Cow position:
               
chrX:27176561-27176222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
3-326
               

               
Cow position:
               
chrX:34663080-34662751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
3-329
               

               
Cow position:
               
chrX:24259819-24259481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
145, 215
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chrX:48652968-48652604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
28, 232
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chrX:24424624-24424258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chrX:30133565-30133175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chrX:25816137-25815750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
4-285
               

               
Cow position:
               
chrX:8517636-8517926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
4-326
               

               
Cow position:
               
chrX:40826987-40826656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 81
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chrX:21004444-21004797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 199
               

               
Conread position:
               
4-358
               

               
Cow position:
               
chrX:41884658-41884285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
22, 229
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chrX:35224062-35224425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
27, 45
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chrX:37119359-37119731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
4-370
               

               
Cow position:
               
chrX:21672311-21672700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
22, 230
               

               
Conread position:
               
4-370
               

               
Cow position:
               
chrX:33493535-33493916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 310
               

               
Conread position:
               
4-371
               

               
Cow position:
               
chrX:45967922-45968289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 105
               

               
Conread position:
               
4-372
               

               
Cow position:
               
chrX:26492762-26493148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
18, 227
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chrX:42492752-42492381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
4-382
               

               
Cow position:
               
chrX:27394254-27393874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 125
               

               
Conread position:
               
4-382
               

               
Cow position:
               
chrX:34543547-34543936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
6-257
               

               
Cow position:
               
chrX:32128218-32127966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
6-340
               

               
Cow position:
               
chrX:27680165-27680507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
26, 104
               

               
Conread position:
               
6-360
               

               
Cow position:
               
chrX:8925465-8925828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
26, 111
               

               
Conread position:
               
6-366
               

               
Cow position:
               
chrX:917607-917232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
36, 224
               

               
Conread position:
               
6-370
               

               
Cow position:
               
chrX:31294780-31294432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
6-373
               

               
Cow position:
               
chrX:40481109-40480736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
6-399
               

               
Cow position:
               
chrX:11082851-11082451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
25, 154
               

               
Conread position:
               
7-358
               

               
Cow position:
               
chrX:37232172-37232534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
17, 234
               

               
Conread position:
               
8-344
               

               
Cow position:
               
chrX:47967363-47967720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
18, 120
               

               
Conread position:
               
8-370
               

               
Cow position:
               
chrX:7646022-7646396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 60
               

               
Conread position:
               
8-370
               

               
Cow position:
               
chrX:20697844-20697469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
22, 203
               

               
Conread position:
               
8-380
               

               
Cow position:
               
chrX:15814861-15815231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
8-418
               

               
Cow position:
               
chrX:30543518-30543095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
100, 29
               

               
Conread position:
               
10-382
               

               
Cow position:
               
chrX:30963106-30962724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 100
               

               
Conread position:
               
12-373
               

               
Cow position:
               
chrX:36975717-36976094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
19, 215
               

               
Conread position:
               
12-382
               

               
Cow position:
               
chrX:29602062-29601676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
20-367
               

               
Cow position:
               
chrX:37910231-37910581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 83
               

               
Conread position:
               
21-272
               

               
Cow position:
               
chrX:14900941-14900689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
146, 135
               

               
Conread position:
               
21-334
               

               
Cow position:
               
chrX:26625897-26625568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
7, 144
               

               
Conread position:
               
21-368
               

               
Cow position:
               
chrX:6690468-6690122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
7, 90
               

               
Conread position:
               
21-370
               

               
Cow position:
               
chrX:1503119-1503467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
128, 249
               

               
Conread position:
               
21-393
               

               
Cow position:
               
chrX:9201327-9201709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
22-380
               

               
Cow position:
               
chrX:15007370-15007000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
8, 64
               

               
Conread position:
               
27-333
               

               
Cow position:
               
chrX:38935068-38935381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
82, 213
               

               
Conread position:
               
27-368
               

               
Cow position:
               
chrX:29120845-29121185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
106, 11
               

               
Conread position:
               
27-378
               

               
Cow position:
               
chrX:22821834-22822194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 191
               

               
Conread position:
               
28-280
               

               
Cow position:
               
chrX:35681133-35681391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
28-358
               

               
Cow position:
               
chrX:1514613-1514292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
154, 80
               

               
Conread position:
               
28-360
               

               
Cow position:
               
chrX:22624269-22624604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
28-369
               

               
Cow position:
               
chrX:11633466-11633821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
121, 196
               

               
Conread position:
               
28-370
               

               
Cow position:
               
chrX:10959615-10959255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 229
               

               
Conread position:
               
28-370
               

               
Cow position:
               
chrX:39126126-39126466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
139, 16
               

               
Conread position:
               
28-371
               

               
Cow position:
               
chrX:37489518-37489859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
28-372
               

               
Cow position:
               
chrX:3130369-3130713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
81, 103
               

               
Conread position:
               
28-373
               

               
Cow position:
               
chrX:27174782-27175141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
14, 262
               

               
Conread position:
               
28-374
               

               
Cow position:
               
chrX:33639759-33640119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
135, 196
               

               
Conread position:
               
28-382
               

               
Cow position:
               
chrX:4044062-4043715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
126, 10
               

               
Conread position:
               
28-382
               

               
Cow position:
               
chrX:12980043-12979682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
80, 134
               

               
Conread position:
               
28-382
               

               
Cow position:
               
chrX:42247396-42247030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 94
               

               
Conread position:
               
28-391
               

               
Cow position:
               
chrX:42381312-42380951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
130, 95
               

               
Conread position:
               
28-397
               

               
Cow position:
               
chrX:6265798-6265433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
132, 70
               

               
Conread position:
               
28-399
               

               
Cow position:
               
chrX:20801567-20801937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
139, 55
               

               
Conread position:
               
29-322
               

               
Cow position:
               
chrX:29542430-29542126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
29-326
               

               
Cow position:
               
chrX:841947-842252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
126, 86
               

               
Conread position:
               
30-358
               

               
Cow position:
               
chrX:39558557-39558222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
119, 97
               

               
Conread position:
               
30-369
               

               
Cow position:
               
chrX:11073399-11073052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 106
               

               
Conread position:
               
32-382
               

               
Cow position:
               
chrX:34411631-34411998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
32-394
               

               
Cow position:
               
chrX:6278714-6278335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 196
               

               
Conread position:
               
33-368
               

               
Cow position:
               
chrX:32420011-32420350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
97, 183
               

               
Conread position:
               
34-279
               

               
Cow position:
               
chrX:36961428-36961689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
10, 197
               

               
Conread position:
               
34-333
               

               
Cow position:
               
chrX:16996300-16996594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
129, 78
               

               
Conread position:
               
34-373
               

               
Cow position:
               
chrX:8869614-8869258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
34-373
               

               
Cow position:
               
chrX:46587611-46587965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 94
               

               
Conread position:
               
37-382
               

               
Cow position:
               
chrX:29545083-29544725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
72, 54
               

               
Conread position:
               
39-348
               

               
Cow position:
               
chrX:47301105-47300786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 185
               

               
Conread position:
               
39-348
               

               
Cow position:
               
chrX:47303081-47302760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
40-348
               

               
Cow position:
               
chrX:45148974-45149285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
76, 160
               

               
Conread position:
               
41-363
               

               
Cow position:
               
chrX:1499470-1499799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
119, 66
               

               
Conread position:
               
43-372
               

               
Cow position:
               
chrX:33000706-33001048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
65, 95
               

               
Conread position:
               
43-393
               

               
Cow position:
               
chrX:37781315-37780944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
65, 167
               

               
Conread position:
               
49-382
               

               
Cow position:
               
chrX:43730406-43730072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
105, 73
               

               
Conread position:
               
50-371
               

               
Cow position:
               
chrX:44657155-44656816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 223
               

               
Conread position:
               
50-382
               

               
Cow position:
               
chrX:31311835-31312181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
59-358
               

               
Cow position:
               
chrX:36067838-36068142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
96, 49
               

               
Conread position:
               
62-328
               

               
Cow position:
               
chrX:36060973-36061257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
45, 170
               

               
Conread position:
               
62-369
               

               
Cow position:
               
chrX:42235712-42235385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
32, 166
               

               
Conread position:
               
62-382
               

               
Cow position:
               
chrX:31252239-31252559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
63-369
               

               
Cow position:
               
chrX:29680438-29680122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 160
               

               
Conread position:
               
64-338
               

               
Cow position:
               
chrX:47166061-47165780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
66-382
               

               
Cow position:
               
chrX:27145449-27145756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 91
               

               
Conread position:
               
67-385
               

               
Cow position:
               
chrX:46433309-46433645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 165
               

               
Conread position:
               
68-382
               

               
Cow position:
               
chrX:6407376-6407695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
62, 52
               

               
Conread position:
               
68-382
               

               
Cow position:
               
chrX:35885902-35885575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 152
               

               
Conread position:
               
68-385
               

               
Cow position:
               
chrX:22387420-22387095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
27, 160
               

               
Conread position:
               
69-370
               

               
Cow position:
               
chrX:4279286-4278978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
77-371
               

               
Cow position:
               
chrX:41068564-41068866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 21
               

               
Conread position:
               
82-373
               

               
Cow position:
               
chrX:36355957-36356248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
67, 214
               

               
Conread position:
               
91-322
               

               
Cow position:
               
chrX:12405535-12405290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 5
               

               
Conread position:
               
92-370
               

               
Cow position:
               
chrX:39415518-39415230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 132
               

               
Conread position:
               
96-382
               

               
Cow position:
               
chrX:11085201-11084913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
59, 119
               

               
Conread position:
               
101-350
               

               
Cow position:
               
chrX:21566263-21566526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 120
               

               
Conread position:
               
103-380
               

               
Cow position:
               
chrX:7710680-7710389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
46, 124
               

               
Conread position:
               
105-371
               

               
Cow position:
               
chrX:18204598-18204322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
44, 123
               

               
Conread position:
               
105-392
               

               
Cow position:
               
chrX:41027022-41027320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
44, 116
               

               
Conread position:
               
108-382
               

               
Cow position:
               
chrX:40685463-40685176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
111-382
               

               
Cow position:
               
chrX:38728608-38728886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 112
               

               
Conread position:
               
125-372
               

               
Cow position:
               
chrX:24331663-24331918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 117
               

               
Conread position:
               
125-381
               

               
Cow position:
               
chrX:4109086-4109335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 5
               

               
Conread position:
               
143-382
               

               
Cow position:
               
chrX:27261096-27261344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
143-399
               

               
Cow position:
               
chrX:10516159-10516421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
148-364
               

               
Cow position:
               
chrX:31515082-31515308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
149-367
               

               
Cow position:
               
chrX:39219994-39220216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
167-382
               

               
Cow position:
               
chrX:21327839-21328065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
184-382
               

               
Cow position:
               
chrX:29050199-29050400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
184-382
               

               
Cow position:
               
chrX:32978125-32977934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
187-371
               

               
Cow position:
               
chrX:4645957-4645772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 27
               

               
Conread position:
               
199-373
               

               
Cow position:
               
chrX:22915070-22914899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
153, 15
               

               
Conread position:
               
199-382
               

               
Cow position:
               
chrX:37129234-37129421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
205-372
               

               
Cow position:
               
chrX:20743575-20743746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
212-385
               

               
Cow position:
               
chrX:25411886-25412060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 142
               

               
Conread position:
               
224-380
               

               
Cow position:
               
chrX:39290352-39290507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
229-373
               

               
Cow position:
               
chrX:42450016-42449871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
124, 0
               
Show alignments to all cow chromosomes.