• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Pig2-108K12
        

               
Conread position:
               
1-347
               

               
Cow position:
               
chr5:28650810-28651141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr5:24087473-24087126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
318, 100
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr5:15362632-15362982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 125
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr5:30347405-30347046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
70, 171
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr5:31635001-31635362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
355, 113
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr5:17387043-17386655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 207
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr5:15882930-15882509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 225
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr5:29969185-29969604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 209
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr5:46295120-46294695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 211
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr5:3058228-3058648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 76
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr5:14630356-14629928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 207
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr5:51165734-51165306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 212
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr5:4630669-4631121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 223
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr5:12640677-12640233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
422, 206
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr5:55942845-55942393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 86
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chr5:35144895-35145359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 212
               

               
Conread position:
               
1-467
               

               
Cow position:
               
chr5:49820694-49821164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
1-476
               

               
Cow position:
               
chr5:6129908-6130387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 206
               

               
Conread position:
               
1-476
               

               
Cow position:
               
chr5:58004797-58005279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 160
               

               
Conread position:
               
1-481
               

               
Cow position:
               
chr5:46104395-46103910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 231
               

               
Conread position:
               
1-485
               

               
Cow position:
               
chr5:15112678-15112185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 206
               

               
Conread position:
               
1-491
               

               
Cow position:
               
chr5:10514696-10515185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 206
               

               
Conread position:
               
1-491
               

               
Cow position:
               
chr5:24485862-24485387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
1-492
               

               
Cow position:
               
chr5:34115194-34115703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 325
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr5:62827202-62826701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 120
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr5:27403688-27403177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 196
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr5:41523233-41522741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 11
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chr5:54405343-54404831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 207
               

               
Conread position:
               
1-506
               

               
Cow position:
               
chr5:30486805-30487303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 40
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chr5:64823750-64823243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 38
               

               
Conread position:
               
1-520
               

               
Cow position:
               
chr5:56442834-56443350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 82
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr5:54714190-54713656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 224
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr5:279603-279059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 118
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr5:7397098-7397633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 206
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr5:8178734-8179274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 206
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr5:26505851-26505307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 187
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr5:34528130-34528639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 28
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr5:34709344-34709888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 206
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr5:43984660-43985185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 10
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr5:47559984-47559448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
328, 204
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr5:49522278-49522822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 208
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr5:66816028-66815480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 55
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr5:74644108-74643586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 141
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr5:18557841-18557302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 206
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr5:16508638-16509204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
1-544
               

               
Cow position:
               
chr5:7175875-7176434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 90
               

               
Conread position:
               
1-544
               

               
Cow position:
               
chr5:16206590-16206056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
426, 206
               

               
Conread position:
               
1-544
               

               
Cow position:
               
chr5:23141025-23140490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 140
               

               
Conread position:
               
1-545
               

               
Cow position:
               
chr5:34638445-34638983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 185
               

               
Conread position:
               
1-545
               

               
Cow position:
               
chr5:74015495-74016040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 17
               

               
Conread position:
               
1-546
               

               
Cow position:
               
chr5:34464032-34463477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 125
               

               
Conread position:
               
1-546
               

               
Cow position:
               
chr5:51151809-51151253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 53
               

               
Conread position:
               
1-546
               

               
Cow position:
               
chr5:66257200-66257737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 91
               

               
Conread position:
               
1-547
               

               
Cow position:
               
chr5:7192988-7193521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 27
               

               
Conread position:
               
1-547
               

               
Cow position:
               
chr5:8024641-8024098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 135
               

               
Conread position:
               
1-547
               

               
Cow position:
               
chr5:30302450-30302993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 206
               

               
Conread position:
               
1-548
               

               
Cow position:
               
chr5:9090453-9089920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 100
               

               
Conread position:
               
1-548
               

               
Cow position:
               
chr5:12323243-12322704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 200
               

               
Conread position:
               
1-548
               

               
Cow position:
               
chr5:29771072-29771631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 32
               

               
Conread position:
               
1-548
               

               
Cow position:
               
chr5:29903970-29903420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 210
               

               
Conread position:
               
1-548
               

               
Cow position:
               
chr5:35207813-35208364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 199
               

               
Conread position:
               
1-548
               

               
Cow position:
               
chr5:45846140-45845588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
1-548
               

               
Cow position:
               
chr5:47601363-47601915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 226
               

               
Conread position:
               
1-548
               

               
Cow position:
               
chr5:53835247-53835819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 100
               

               
Conread position:
               
1-548
               

               
Cow position:
               
chr5:64321307-64321857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
1-549
               

               
Cow position:
               
chr5:4218435-4218963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 114
               

               
Conread position:
               
1-549
               

               
Cow position:
               
chr5:5937876-5938426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 205
               

               
Conread position:
               
1-549
               

               
Cow position:
               
chr5:21828408-21828971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 502
               

               
Conread position:
               
1-549
               

               
Cow position:
               
chr5:31470022-31469489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 149
               

               
Conread position:
               
1-549
               

               
Cow position:
               
chr5:52040758-52040219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 177
               

               
Conread position:
               
1-550
               

               
Cow position:
               
chr5:52165627-52165073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 199
               

               
Conread position:
               
1-552
               

               
Cow position:
               
chr5:15478661-15479233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 135
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:6044838-6045404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 206
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:15363446-15363990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 43
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:16894217-16893663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 206
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:18573722-18574280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 206
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:26467174-26467736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 206
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:27179211-27179765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 70
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:28330771-28330235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 46
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:30276254-30276798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 75
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:41546339-41545785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 207
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:48828697-48829262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 208
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:54876112-54875586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 109
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:55756887-55756307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 119
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr5:65776844-65776277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:4032459-4031877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 74
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:14904504-14903959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 206
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:17027641-17028204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 219
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:27615046-27615621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 179
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:28224014-28224561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:32394164-32394708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 159
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:35826152-35826711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 157
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:37377421-37377962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 39
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:37758265-37757730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 159
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:39447982-39447426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 73
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:44054482-44053946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 86
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:44752767-44752198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 213
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:44848462-44847912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 144
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:53855261-53855815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 39
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:55176438-55176995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 212
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:58855657-58856211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 36
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:72007324-72006756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 448
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr5:72046092-72045568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 41
               

               
Conread position:
               
1-556
               

               
Cow position:
               
chr5:2310029-2309445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 109
               

               
Conread position:
               
1-556
               

               
Cow position:
               
chr5:59082640-59082083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 206
               

               
Conread position:
               
1-557
               

               
Cow position:
               
chr5:3204392-3204940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 36
               

               
Conread position:
               
1-557
               

               
Cow position:
               
chr5:26096848-26097401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
1-557
               

               
Cow position:
               
chr5:31097250-31096689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 79
               

               
Conread position:
               
1-557
               

               
Cow position:
               
chr5:47704583-47704014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 206
               

               
Conread position:
               
1-557
               

               
Cow position:
               
chr5:50637390-50637933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 40
               

               
Conread position:
               
1-557
               

               
Cow position:
               
chr5:63647915-63647367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 209
               

               
Conread position:
               
1-557
               

               
Cow position:
               
chr5:64524329-64523751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 209
               

               
Conread position:
               
1-561
               

               
Cow position:
               
chr5:47871493-47870926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 80
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr5:34923572-34923192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 294
               

               
Conread position:
               
2-486
               

               
Cow position:
               
chr5:7921835-7921361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 228
               

               
Conread position:
               
2-493
               

               
Cow position:
               
chr5:6087011-6086510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 13
               

               
Conread position:
               
2-499
               

               
Cow position:
               
chr5:27015246-27015734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 150
               

               
Conread position:
               
2-515
               

               
Cow position:
               
chr5:2500640-2500109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 199
               

               
Conread position:
               
2-524
               

               
Cow position:
               
chr5:46653447-46653975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
66, 152
               

               
Conread position:
               
2-533
               

               
Cow position:
               
chr5:72314901-72314367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
249, 90
               

               
Conread position:
               
2-534
               

               
Cow position:
               
chr5:13909053-13908525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 156
               

               
Conread position:
               
2-536
               

               
Cow position:
               
chr5:51309521-51310062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 22
               

               
Conread position:
               
2-544
               

               
Cow position:
               
chr5:17087468-17086922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 34
               

               
Conread position:
               
2-545
               

               
Cow position:
               
chr5:24348677-24349207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
356, 27
               

               
Conread position:
               
2-553
               

               
Cow position:
               
chr5:37190535-37189989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
2-554
               

               
Cow position:
               
chr5:29827606-29828156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
425, 205
               

               
Conread position:
               
2-554
               

               
Cow position:
               
chr5:56467258-56467799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 150
               

               
Conread position:
               
2-554
               

               
Cow position:
               
chr5:67932916-67932363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 36
               

               
Conread position:
               
3-365
               

               
Cow position:
               
chr5:19969478-19969112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 204
               

               
Conread position:
               
3-371
               

               
Cow position:
               
chr5:68480753-68481145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 260
               

               
Conread position:
               
3-421
               

               
Cow position:
               
chr5:33467493-33467070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 82
               

               
Conread position:
               
3-496
               

               
Cow position:
               
chr5:42096169-42096674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
29, 180
               

               
Conread position:
               
3-530
               

               
Cow position:
               
chr5:31145222-31144702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 72
               

               
Conread position:
               
3-548
               

               
Cow position:
               
chr5:15598679-15598135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 168
               

               
Conread position:
               
3-548
               

               
Cow position:
               
chr5:19813667-19813117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 271
               

               
Conread position:
               
3-548
               

               
Cow position:
               
chr5:43923595-43923058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 204
               

               
Conread position:
               
3-553
               

               
Cow position:
               
chr5:3582131-3582668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 270
               

               
Conread position:
               
3-554
               

               
Cow position:
               
chr5:4710580-4710043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 31
               

               
Conread position:
               
3-554
               

               
Cow position:
               
chr5:26378114-26377558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 203
               

               
Conread position:
               
3-554
               

               
Cow position:
               
chr5:46510313-46509756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 8
               

               
Conread position:
               
3-561
               

               
Cow position:
               
chr5:3242905-3242368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 12
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr5:67654860-67655232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 216
               

               
Conread position:
               
4-544
               

               
Cow position:
               
chr5:50599626-50600147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 72
               

               
Conread position:
               
4-553
               

               
Cow position:
               
chr5:35762846-35763370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
414, 34
               

               
Conread position:
               
5-450
               

               
Cow position:
               
chr5:64844562-64844125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 202
               

               
Conread position:
               
5-486
               

               
Cow position:
               
chr5:16184648-16185131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 195
               

               
Conread position:
               
5-508
               

               
Cow position:
               
chr5:3281311-3280809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 116
               

               
Conread position:
               
5-517
               

               
Cow position:
               
chr5:30816270-30816777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 203
               

               
Conread position:
               
5-530
               

               
Cow position:
               
chr5:46122760-46122268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 60
               

               
Conread position:
               
5-544
               

               
Cow position:
               
chr5:20408102-20407579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 157
               

               
Conread position:
               
5-546
               

               
Cow position:
               
chr5:21617021-21617559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 148
               

               
Conread position:
               
5-549
               

               
Cow position:
               
chr5:45705587-45706138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 218
               

               
Conread position:
               
5-551
               

               
Cow position:
               
chr5:37645621-37646187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 514
               

               
Conread position:
               
5-553
               

               
Cow position:
               
chr5:66366090-66366617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 72
               

               
Conread position:
               
5-554
               

               
Cow position:
               
chr5:68082407-68081864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
72, 37
               

               
Conread position:
               
5-556
               

               
Cow position:
               
chr5:37942233-37941696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 27
               

               
Conread position:
               
5-558
               

               
Cow position:
               
chr5:14551022-14550471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 44
               

               
Conread position:
               
6-474
               

               
Cow position:
               
chr5:40595469-40594985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
141, 91
               

               
Conread position:
               
6-487
               

               
Cow position:
               
chr5:19470620-19470147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 61
               

               
Conread position:
               
6-551
               

               
Cow position:
               
chr5:65933376-65932837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 212
               

               
Conread position:
               
6-553
               

               
Cow position:
               
chr5:14314080-14314636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 159
               

               
Conread position:
               
7-553
               

               
Cow position:
               
chr5:50821347-50821891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
419, 31
               

               
Conread position:
               
7-554
               

               
Cow position:
               
chr5:26094612-26094057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 201
               

               
Conread position:
               
8-338
               

               
Cow position:
               
chr5:41936229-41935913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 29
               

               
Conread position:
               
8-357
               

               
Cow position:
               
chr5:41953253-41952899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
85, 98
               

               
Conread position:
               
9-492
               

               
Cow position:
               
chr5:26790884-26790407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 191
               

               
Conread position:
               
9-537
               

               
Cow position:
               
chr5:26647277-26647816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
10-422
               

               
Cow position:
               
chr5:49558723-49559142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 76
               

               
Conread position:
               
11-553
               

               
Cow position:
               
chr5:57935543-57935000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 65
               

               
Conread position:
               
12-553
               

               
Cow position:
               
chr5:69337377-69337928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 159
               

               
Conread position:
               
17-554
               

               
Cow position:
               
chr5:58519831-58519307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 20
               

               
Conread position:
               
18-542
               

               
Cow position:
               
chr5:20411071-20410538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
18-547
               

               
Cow position:
               
chr5:56523743-56524276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 195
               

               
Conread position:
               
18-554
               

               
Cow position:
               
chr5:6528250-6528794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 101
               

               
Conread position:
               
19-422
               

               
Cow position:
               
chr5:12672455-12672057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 191
               

               
Conread position:
               
22-553
               

               
Cow position:
               
chr5:26133501-26132989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 185
               

               
Conread position:
               
24-360
               

               
Cow position:
               
chr5:34888288-34887952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
78, 183
               

               
Conread position:
               
24-404
               

               
Cow position:
               
chr5:31433848-31434220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
24-508
               

               
Cow position:
               
chr5:32378444-32378909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 187
               

               
Conread position:
               
24-551
               

               
Cow position:
               
chr5:46611520-46610992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 206
               

               
Conread position:
               
25-546
               

               
Cow position:
               
chr5:61839761-61840289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 192
               

               
Conread position:
               
26-553
               

               
Cow position:
               
chr5:55068299-55068814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 95
               

               
Conread position:
               
26-554
               

               
Cow position:
               
chr5:28946486-28945951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
26-554
               

               
Cow position:
               
chr5:41604183-41604732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 95
               

               
Conread position:
               
29-423
               

               
Cow position:
               
chr5:14415351-14415747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
31-549
               

               
Cow position:
               
chr5:33414823-33414307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 175
               

               
Conread position:
               
32-554
               

               
Cow position:
               
chr5:18276069-18276590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
33-485
               

               
Cow position:
               
chr5:48224991-48224540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 94
               

               
Conread position:
               
33-554
               

               
Cow position:
               
chr5:65887430-65886901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 124
               

               
Conread position:
               
37-553
               

               
Cow position:
               
chr5:62171995-62172520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 10
               

               
Conread position:
               
38-553
               

               
Cow position:
               
chr5:39094142-39094658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 93
               

               
Conread position:
               
40-554
               

               
Cow position:
               
chr5:21524756-21525269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 112
               

               
Conread position:
               
44-554
               

               
Cow position:
               
chr5:21040379-21039874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 158
               

               
Conread position:
               
46-478
               

               
Cow position:
               
chr5:44583517-44583097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 101
               

               
Conread position:
               
47-517
               

               
Cow position:
               
chr5:50729097-50729551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 144
               

               
Conread position:
               
50-360
               

               
Cow position:
               
chr5:44369494-44369809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
26, 81
               

               
Conread position:
               
50-503
               

               
Cow position:
               
chr5:41531489-41531027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 158
               

               
Conread position:
               
50-557
               

               
Cow position:
               
chr5:42777375-42777861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 151
               

               
Conread position:
               
55-537
               

               
Cow position:
               
chr5:22737711-22738197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 158
               

               
Conread position:
               
60-523
               

               
Cow position:
               
chr5:13691964-13691489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 111
               

               
Conread position:
               
60-537
               

               
Cow position:
               
chr5:33180526-33181008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
259, 88
               

               
Conread position:
               
63-458
               

               
Cow position:
               
chr5:31020500-31020125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 144
               

               
Conread position:
               
68-420
               

               
Cow position:
               
chr5:39675830-39675481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
16, 146
               

               
Conread position:
               
68-552
               

               
Cow position:
               
chr5:72564378-72564871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 108
               

               
Conread position:
               
68-554
               

               
Cow position:
               
chr5:54310948-54311445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 50
               

               
Conread position:
               
69-537
               

               
Cow position:
               
chr5:55430254-55430732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 138
               

               
Conread position:
               
71-520
               

               
Cow position:
               
chr5:9099813-9099360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 136
               

               
Conread position:
               
73-406
               

               
Cow position:
               
chr5:26403880-26403541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
9, 136
               

               
Conread position:
               
73-553
               

               
Cow position:
               
chr5:38852983-38853457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 134
               

               
Conread position:
               
75-543
               

               
Cow position:
               
chr5:12146319-12146795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
244, 132
               

               
Conread position:
               
76-482
               

               
Cow position:
               
chr5:23856536-23856121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 130
               

               
Conread position:
               
76-557
               

               
Cow position:
               
chr5:47317341-47316862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 131
               

               
Conread position:
               
82-518
               

               
Cow position:
               
chr5:63840511-63840070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 103
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chr5:66338722-66339144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 125
               

               
Conread position:
               
86-554
               

               
Cow position:
               
chr5:41129391-41129851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 287
               

               
Conread position:
               
87-433
               

               
Cow position:
               
chr5:69099164-69099517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 36
               

               
Conread position:
               
87-449
               

               
Cow position:
               
chr5:40357249-40356858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 216
               

               
Conread position:
               
87-554
               

               
Cow position:
               
chr5:34442155-34441671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 125
               

               
Conread position:
               
87-554
               

               
Cow position:
               
chr5:44994407-44993940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 166
               

               
Conread position:
               
88-554
               

               
Cow position:
               
chr5:53841923-53842403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 92
               

               
Conread position:
               
90-553
               

               
Cow position:
               
chr5:9894483-9894015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 88
               

               
Conread position:
               
91-548
               

               
Cow position:
               
chr5:58793972-58793504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 66
               

               
Conread position:
               
92-360
               

               
Cow position:
               
chr5:63967998-63967736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 79
               

               
Conread position:
               
93-554
               

               
Cow position:
               
chr5:39258198-39258614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 79
               

               
Conread position:
               
93-554
               

               
Cow position:
               
chr5:67212025-67212470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 115
               

               
Conread position:
               
100-534
               

               
Cow position:
               
chr5:75829078-75828661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
212, 53
               

               
Conread position:
               
101-548
               

               
Cow position:
               
chr5:28927945-28927491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 124
               

               
Conread position:
               
101-557
               

               
Cow position:
               
chr5:34887546-34887083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 110
               

               
Conread position:
               
102-476
               

               
Cow position:
               
chr5:51357849-51357468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 108
               

               
Conread position:
               
103-561
               

               
Cow position:
               
chr5:42845946-42845478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 107
               

               
Conread position:
               
106-548
               

               
Cow position:
               
chr5:20783284-20783725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 72
               

               
Conread position:
               
109-557
               

               
Cow position:
               
chr5:52645420-52644968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 104
               

               
Conread position:
               
114-425
               

               
Cow position:
               
chr5:60519840-60520138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 88
               

               
Conread position:
               
114-523
               

               
Cow position:
               
chr5:32141032-32140630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 65
               

               
Conread position:
               
114-554
               

               
Cow position:
               
chr5:26477357-26476909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 219
               

               
Conread position:
               
114-561
               

               
Cow position:
               
chr5:47313138-47313586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 99
               

               
Conread position:
               
115-556
               

               
Cow position:
               
chr5:39936769-39937226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 96
               

               
Conread position:
               
116-360
               

               
Cow position:
               
chr5:57787044-57787284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
116-485
               

               
Cow position:
               
chr5:20344836-20345204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
164, 97
               

               
Conread position:
               
116-554
               

               
Cow position:
               
chr5:43858761-43858311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 90
               

               
Conread position:
               
116-554
               

               
Cow position:
               
chr5:45226162-45225708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 167
               

               
Conread position:
               
117-356
               

               
Cow position:
               
chr5:52269520-52269278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 92
               

               
Conread position:
               
117-549
               

               
Cow position:
               
chr5:26990066-26990494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 49
               

               
Conread position:
               
118-394
               

               
Cow position:
               
chr5:62261519-62261811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
118-507
               

               
Cow position:
               
chr5:5685390-5684994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
201, 88
               

               
Conread position:
               
121-483
               

               
Cow position:
               
chr5:34915813-34916171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 87
               

               
Conread position:
               
121-554
               

               
Cow position:
               
chr5:44797043-44796624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 81
               

               
Conread position:
               
122-360
               

               
Cow position:
               
chr5:66119583-66119338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
197, 102
               

               
Conread position:
               
123-553
               

               
Cow position:
               
chr5:68718564-68718975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
302, 82
               

               
Conread position:
               
124-556
               

               
Cow position:
               
chr5:27103116-27102683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 47
               

               
Conread position:
               
125-478
               

               
Cow position:
               
chr5:42747838-42748186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 51
               

               
Conread position:
               
126-557
               

               
Cow position:
               
chr5:57327476-57327913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 35
               

               
Conread position:
               
128-554
               

               
Cow position:
               
chr5:60715676-60715259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 59
               

               
Conread position:
               
130-405
               

               
Cow position:
               
chr5:15462406-15462671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 70
               

               
Conread position:
               
131-553
               

               
Cow position:
               
chr5:19905613-19905175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
75, 259
               

               
Conread position:
               
133-554
               

               
Cow position:
               
chr5:24175055-24175484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 73
               

               
Conread position:
               
133-554
               

               
Cow position:
               
chr5:39695339-39695760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
74, 41
               

               
Conread position:
               
133-557
               

               
Cow position:
               
chr5:50722731-50723158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
134-542
               

               
Cow position:
               
chr5:5111392-5110977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 79
               

               
Conread position:
               
135-553
               

               
Cow position:
               
chr5:65941566-65941142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 36
               

               
Conread position:
               
136-442
               

               
Cow position:
               
chr5:41229398-41229704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
136-553
               

               
Cow position:
               
chr5:40831000-40831415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
157, 71
               

               
Conread position:
               
137-501
               

               
Cow position:
               
chr5:4797625-4797263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 76
               

               
Conread position:
               
138-552
               

               
Cow position:
               
chr5:53055864-53055454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 69
               

               
Conread position:
               
139-557
               

               
Cow position:
               
chr5:50483172-50482748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 68
               

               
Conread position:
               
140-548
               

               
Cow position:
               
chr5:65752550-65752963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 73
               

               
Conread position:
               
142-562
               

               
Cow position:
               
chr5:4551825-4552261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 65
               

               
Conread position:
               
146-553
               

               
Cow position:
               
chr5:50533683-50533280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 11
               

               
Conread position:
               
147-554
               

               
Cow position:
               
chr5:63964483-63964056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 358
               

               
Conread position:
               
148-554
               

               
Cow position:
               
chr5:59225-58824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 28
               

               
Conread position:
               
149-468
               

               
Cow position:
               
chr5:72149951-72150275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 59
               

               
Conread position:
               
149-530
               

               
Cow position:
               
chr5:45170061-45170444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 55
               

               
Conread position:
               
153-537
               

               
Cow position:
               
chr5:33081086-33080700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
153-557
               

               
Cow position:
               
chr5:68604557-68604965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
60, 98
               

               
Conread position:
               
156-468
               

               
Cow position:
               
chr5:59443544-59443223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 54
               

               
Conread position:
               
157-399
               

               
Cow position:
               
chr5:23666550-23666308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
160, 22
               

               
Conread position:
               
160-418
               

               
Cow position:
               
chr5:63917696-63917441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
161, 46
               

               
Conread position:
               
160-501
               

               
Cow position:
               
chr5:43474565-43474902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 26
               

               
Conread position:
               
162-512
               

               
Cow position:
               
chr5:21963992-21964356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 69
               

               
Conread position:
               
163-468
               

               
Cow position:
               
chr5:50950267-50950579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 44
               

               
Conread position:
               
163-536
               

               
Cow position:
               
chr5:57830293-57829913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
156, 43
               

               
Conread position:
               
164-553
               

               
Cow position:
               
chr5:61576255-61576653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 10
               

               
Conread position:
               
166-554
               

               
Cow position:
               
chr5:17999779-17999387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
167-553
               

               
Cow position:
               
chr5:60952380-60952768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
224, 33
               

               
Conread position:
               
167-554
               

               
Cow position:
               
chr5:63987729-63987337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 40
               

               
Conread position:
               
168-553
               

               
Cow position:
               
chr5:52905769-52905388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
126, 39
               

               
Conread position:
               
168-554
               

               
Cow position:
               
chr5:27420002-27419620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 36
               

               
Conread position:
               
170-357
               

               
Cow position:
               
chr5:60730007-60730198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
149, 37
               

               
Conread position:
               
170-549
               

               
Cow position:
               
chr5:12352061-12351703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
130, 37
               

               
Conread position:
               
171-493
               

               
Cow position:
               
chr5:59298237-59297912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
148, 42
               

               
Conread position:
               
172-537
               

               
Cow position:
               
chr5:40889560-40889205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 34
               

               
Conread position:
               
173-547
               

               
Cow position:
               
chr5:75437185-75436785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 343
               

               
Conread position:
               
174-554
               

               
Cow position:
               
chr5:74858293-74858684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
176-542
               

               
Cow position:
               
chr5:42665760-42665399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
128, 30
               

               
Conread position:
               
179-546
               

               
Cow position:
               
chr5:65601193-65601558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 23
               

               
Conread position:
               
179-557
               

               
Cow position:
               
chr5:72903506-72903124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 82
               

               
Conread position:
               
180-551
               

               
Cow position:
               
chr5:14153873-14154253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
180-553
               

               
Cow position:
               
chr5:4507230-4506857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 27
               

               
Conread position:
               
181-499
               

               
Cow position:
               
chr5:71504849-71505185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
181-554
               

               
Cow position:
               
chr5:42063935-42064314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 26
               

               
Conread position:
               
182-548
               

               
Cow position:
               
chr5:63992431-63992069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
68, 31
               

               
Conread position:
               
183-553
               

               
Cow position:
               
chr5:64139297-64139668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 24
               

               
Conread position:
               
187-425
               

               
Cow position:
               
chr5:9859985-9859738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
187-552
               

               
Cow position:
               
chr5:34049847-34050225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 19
               

               
Conread position:
               
189-418
               

               
Cow position:
               
chr5:37366630-37366870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
193-551
               

               
Cow position:
               
chr5:26595359-26594993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
126, 14
               

               
Conread position:
               
193-560
               

               
Cow position:
               
chr5:62870291-62869927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
126, 14
               

               
Conread position:
               
194-458
               

               
Cow position:
               
chr5:61656351-61656614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
129, 12
               

               
Conread position:
               
195-483
               

               
Cow position:
               
chr5:50975633-50975942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
106, 18
               

               
Conread position:
               
195-553
               

               
Cow position:
               
chr5:31640170-31640533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 32
               

               
Conread position:
               
196-554
               

               
Cow position:
               
chr5:36854954-36855315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
204-554
               

               
Cow position:
               
chr5:30844863-30845219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
205-388
               

               
Cow position:
               
chr5:25935703-25935892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 36
               

               
Conread position:
               
208-554
               

               
Cow position:
               
chr5:46323058-46322694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
15, 148
               

               
Conread position:
               
209-554
               

               
Cow position:
               
chr5:16025705-16025359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
210-556
               

               
Cow position:
               
chr5:38832875-38833232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
211-553
               

               
Cow position:
               
chr5:5201678-5202009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
82, 25
               

               
Conread position:
               
212-396
               

               
Cow position:
               
chr5:6032998-6033187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
99, 12
               

               
Conread position:
               
212-406
               

               
Cow position:
               
chr5:66296998-66297195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
107, 12
               

               
Conread position:
               
212-425
               

               
Cow position:
               
chr5:32963869-32963655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
107, 12
               

               
Conread position:
               
212-425
               

               
Cow position:
               
chr5:73252856-73253068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
212-541
               

               
Cow position:
               
chr5:49685525-49685175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 298
               

               
Conread position:
               
212-548
               

               
Cow position:
               
chr5:57626567-57626891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
212-551
               

               
Cow position:
               
chr5:67243684-67244024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
212-554
               

               
Cow position:
               
chr5:11668420-11668076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
212-554
               

               
Cow position:
               
chr5:59326068-59325733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
212-557
               

               
Cow position:
               
chr5:32975795-32975448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
213-421
               

               
Cow position:
               
chr5:48178915-48178705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 11
               

               
Conread position:
               
213-521
               

               
Cow position:
               
chr5:58229462-58229772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
10, 239
               

               
Conread position:
               
213-548
               

               
Cow position:
               
chr5:30253504-30253844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
213-551
               

               
Cow position:
               
chr5:4617138-4617472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 11
               

               
Conread position:
               
213-553
               

               
Cow position:
               
chr5:31918412-31918750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
13, 119
               

               
Conread position:
               
214-503
               

               
Cow position:
               
chr5:48144029-48143725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
215-554
               

               
Cow position:
               
chr5:29353366-29353016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
216-392
               

               
Cow position:
               
chr5:39419021-39418840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
216-399
               

               
Cow position:
               
chr5:2851078-2851268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
216-407
               

               
Cow position:
               
chr5:24642958-24642768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
105, 9
               

               
Conread position:
               
216-487
               

               
Cow position:
               
chr5:37714141-37713850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
216-537
               

               
Cow position:
               
chr5:55967121-55966788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 283
               

               
Conread position:
               
216-547
               

               
Cow position:
               
chr5:37814385-37814728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 126
               

               
Conread position:
               
216-547
               

               
Cow position:
               
chr5:40928211-40927883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
216-554
               

               
Cow position:
               
chr5:28229919-28230273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 132
               

               
Conread position:
               
216-554
               

               
Cow position:
               
chr5:34300689-34301025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
216-554
               

               
Cow position:
               
chr5:37646790-37646435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
216-554
               

               
Cow position:
               
chr5:42744559-42744889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
216-554
               

               
Cow position:
               
chr5:55989503-55989849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 239
               

               
Conread position:
               
216-557
               

               
Cow position:
               
chr5:54350599-54350249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 111
               

               
Conread position:
               
217-396
               

               
Cow position:
               
chr5:32087956-32087767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
102, 7
               

               
Conread position:
               
217-423
               

               
Cow position:
               
chr5:63388557-63388768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 164
               

               
Conread position:
               
217-425
               

               
Cow position:
               
chr5:51076880-51076672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
217-427
               

               
Cow position:
               
chr5:4347948-4347750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
217-540
               

               
Cow position:
               
chr5:741186-740845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
12, 291
               

               
Conread position:
               
217-546
               

               
Cow position:
               
chr5:61600175-61600508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 222
               

               
Conread position:
               
217-548
               

               
Cow position:
               
chr5:41164853-41165191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
217-551
               

               
Cow position:
               
chr5:25919849-25919527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
165, 7
               

               
Conread position:
               
217-553
               

               
Cow position:
               
chr5:28302977-28302635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 142
               

               
Conread position:
               
217-554
               

               
Cow position:
               
chr5:43738185-43737854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 25
               

               
Conread position:
               
217-557
               

               
Cow position:
               
chr5:1247040-1247375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 145
               

               
Conread position:
               
218-557
               

               
Cow position:
               
chr5:65588476-65588811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 30
               

               
Conread position:
               
219-547
               

               
Cow position:
               
chr5:11427474-11427131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
220-537
               

               
Cow position:
               
chr5:23826953-23826620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
220-549
               

               
Cow position:
               
chr5:72895459-72895790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
195, 142
               

               
Conread position:
               
221-553
               

               
Cow position:
               
chr5:11229906-11229565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 285
               

               
Conread position:
               
221-557
               

               
Cow position:
               
chr5:47547948-47547614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
98, 15
               

               
Conread position:
               
222-485
               

               
Cow position:
               
chr5:30639081-30638821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
142, 29
               

               
Conread position:
               
222-496
               

               
Cow position:
               
chr5:12709655-12709941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 27
               

               
Conread position:
               
222-501
               

               
Cow position:
               
chr5:28324114-28324422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
83, 301
               

               
Conread position:
               
222-503
               

               
Cow position:
               
chr5:32956321-32956036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
60, 26
               

               
Conread position:
               
222-505
               

               
Cow position:
               
chr5:56433570-56433871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
78, 29
               

               
Conread position:
               
222-506
               

               
Cow position:
               
chr5:58144837-58144542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 280
               

               
Conread position:
               
222-533
               

               
Cow position:
               
chr5:16938239-16937934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 81
               

               
Conread position:
               
222-540
               

               
Cow position:
               
chr5:40388097-40387785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
201, 86
               

               
Conread position:
               
222-548
               

               
Cow position:
               
chr5:24996455-24996120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
222-552
               

               
Cow position:
               
chr5:51999988-52000325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 27
               

               
Conread position:
               
222-553
               

               
Cow position:
               
chr5:20127823-20128160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 58
               

               
Conread position:
               
222-553
               

               
Cow position:
               
chr5:40109270-40109600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
73, 90
               

               
Conread position:
               
222-553
               

               
Cow position:
               
chr5:41636642-41636975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
222-553
               

               
Cow position:
               
chr5:64137020-64137364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 280
               

               
Conread position:
               
222-554
               

               
Cow position:
               
chr5:6683579-6683258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 73
               

               
Conread position:
               
222-554
               

               
Cow position:
               
chr5:20779611-20779289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 26
               

               
Conread position:
               
222-554
               

               
Cow position:
               
chr5:25035458-25035149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
222-554
               

               
Cow position:
               
chr5:43992094-43992433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 58
               

               
Conread position:
               
222-554
               

               
Cow position:
               
chr5:59438936-59439282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
97, 187
               

               
Conread position:
               
222-557
               

               
Cow position:
               
chr5:6839310-6838967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
97, 188
               

               
Conread position:
               
222-557
               

               
Cow position:
               
chr5:17063325-17062969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 84
               

               
Conread position:
               
223-390
               

               
Cow position:
               
chr5:57156558-57156716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
135, 85
               

               
Conread position:
               
223-486
               

               
Cow position:
               
chr5:9972947-9972693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
218, 139
               

               
Conread position:
               
223-500
               

               
Cow position:
               
chr5:54064549-54064833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 219
               

               
Conread position:
               
223-525
               

               
Cow position:
               
chr5:13536927-13537219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
223-534
               

               
Cow position:
               
chr5:27353466-27353148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 80
               

               
Conread position:
               
223-537
               

               
Cow position:
               
chr5:36868515-36868829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 107
               

               
Conread position:
               
223-548
               

               
Cow position:
               
chr5:22243015-22242662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
96, 39
               

               
Conread position:
               
223-553
               

               
Cow position:
               
chr5:3771616-3771954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 100
               

               
Conread position:
               
223-553
               

               
Cow position:
               
chr5:57074565-57074223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 194
               

               
Conread position:
               
223-554
               

               
Cow position:
               
chr5:22839703-22839365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
27, 144
               

               
Conread position:
               
224-398
               

               
Cow position:
               
chr5:54530753-54530932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
95, 154
               

               
Conread position:
               
224-525
               

               
Cow position:
               
chr5:28926414-28926100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 35
               

               
Conread position:
               
224-540
               

               
Cow position:
               
chr5:56070624-56070954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
95, 30
               

               
Conread position:
               
224-547
               

               
Cow position:
               
chr5:32697042-32696721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 76
               

               
Conread position:
               
224-548
               

               
Cow position:
               
chr5:27172190-27171890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
79, 90
               

               
Conread position:
               
224-553
               

               
Cow position:
               
chr5:32339204-32338857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
224-554
               

               
Cow position:
               
chr5:54086311-54086647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
225-421
               

               
Cow position:
               
chr5:70582126-70581924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
225-540
               

               
Cow position:
               
chr5:73079984-73080300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 56
               

               
Conread position:
               
225-554
               

               
Cow position:
               
chr5:19278920-19278597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
225-554
               

               
Cow position:
               
chr5:71454824-71454503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
22, 159
               

               
Conread position:
               
226-390
               

               
Cow position:
               
chr5:61455527-61455700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
226-472
               

               
Cow position:
               
chr5:56135196-56134935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
93, 159
               

               
Conread position:
               
226-485
               

               
Cow position:
               
chr5:51490981-51490722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 52
               

               
Conread position:
               
226-496
               

               
Cow position:
               
chr5:1766572-1766297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
24, 153
               

               
Conread position:
               
226-530
               

               
Cow position:
               
chr5:56820487-56820179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 55
               

               
Conread position:
               
226-548
               

               
Cow position:
               
chr5:8821239-8820910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 159
               

               
Conread position:
               
226-549
               

               
Cow position:
               
chr5:15426301-15426642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
93, 28
               

               
Conread position:
               
226-553
               

               
Cow position:
               
chr5:35684707-35685043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
92, 159
               

               
Conread position:
               
227-398
               

               
Cow position:
               
chr5:26541070-26541241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
96, 24
               

               
Conread position:
               
227-496
               

               
Cow position:
               
chr5:18090501-18090790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
134, 281
               

               
Conread position:
               
228-554
               

               
Cow position:
               
chr5:5257522-5257179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 136
               

               
Conread position:
               
228-554
               

               
Cow position:
               
chr5:27306093-27306413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 182
               

               
Conread position:
               
228-556
               

               
Cow position:
               
chr5:25495563-25495247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
167, 69
               

               
Conread position:
               
229-554
               

               
Cow position:
               
chr5:27411614-27411292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
230-402
               

               
Cow position:
               
chr5:66281016-66280838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
231-547
               

               
Cow position:
               
chr5:56028752-56028439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
231-554
               

               
Cow position:
               
chr5:35969320-35969641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 156
               

               
Conread position:
               
234-554
               

               
Cow position:
               
chr5:15722273-15721965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
234-554
               

               
Cow position:
               
chr5:48757725-48758049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 60
               

               
Conread position:
               
234-557
               

               
Cow position:
               
chr5:40152256-40152597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
235-554
               

               
Cow position:
               
chr5:62142452-62142785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 160
               

               
Conread position:
               
236-492
               

               
Cow position:
               
chr5:60126156-60126423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
79, 117
               

               
Conread position:
               
238-491
               

               
Cow position:
               
chr5:35235924-35235660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 147
               

               
Conread position:
               
239-486
               

               
Cow position:
               
chr5:7140319-7140063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 80
               

               
Conread position:
               
239-496
               

               
Cow position:
               
chr5:49362205-49361940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
239-540
               

               
Cow position:
               
chr5:33537676-33537963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
80, 128
               

               
Conread position:
               
239-554
               

               
Cow position:
               
chr5:64176335-64176017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 193
               

               
Conread position:
               
240-396
               

               
Cow position:
               
chr5:5848400-5848243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
240-517
               

               
Cow position:
               
chr5:28456625-28456333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 262
               

               
Conread position:
               
240-517
               

               
Cow position:
               
chr5:28459927-28459634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 263
               

               
Conread position:
               
240-546
               

               
Cow position:
               
chr5:71158477-71158180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
79, 194
               

               
Conread position:
               
240-547
               

               
Cow position:
               
chr5:45803847-45804162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
79, 65
               

               
Conread position:
               
240-556
               

               
Cow position:
               
chr5:26262887-26262568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
241-486
               

               
Cow position:
               
chr5:57271478-57271237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
5, 189
               

               
Conread position:
               
241-553
               

               
Cow position:
               
chr5:48154685-48154357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
81, 67
               

               
Conread position:
               
243-485
               

               
Cow position:
               
chr5:43395348-43395107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
243-548
               

               
Cow position:
               
chr5:40039981-40039663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 266
               

               
Conread position:
               
243-554
               

               
Cow position:
               
chr5:18898773-18899082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 134
               

               
Conread position:
               
243-554
               

               
Cow position:
               
chr5:57736904-57737208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 141
               

               
Conread position:
               
243-554
               

               
Cow position:
               
chr5:71494606-71494930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 172
               

               
Conread position:
               
244-425
               

               
Cow position:
               
chr5:6575797-6575615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
75, 162
               

               
Conread position:
               
244-479
               

               
Cow position:
               
chr5:45036812-45037050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 131
               

               
Conread position:
               
244-539
               

               
Cow position:
               
chr5:29212739-29213032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
86, 68
               

               
Conread position:
               
245-551
               

               
Cow position:
               
chr5:458273-458594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 213
               

               
Conread position:
               
245-554
               

               
Cow position:
               
chr5:4280255-4280557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 119
               

               
Conread position:
               
245-554
               

               
Cow position:
               
chr5:64758972-64758658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 53
               

               
Conread position:
               
246-547
               

               
Cow position:
               
chr5:7044918-7044603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
246-548
               

               
Cow position:
               
chr5:41713109-41713402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
246-553
               

               
Cow position:
               
chr5:44049495-44049806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
116, 251
               

               
Conread position:
               
246-553
               

               
Cow position:
               
chr5:51053855-51053541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 147
               

               
Conread position:
               
247-442
               

               
Cow position:
               
chr5:72845979-72845787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
118, 61
               

               
Conread position:
               
248-500
               

               
Cow position:
               
chr5:8994771-8994508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 124
               

               
Conread position:
               
249-394
               

               
Cow position:
               
chr5:24837150-24837001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
249-418
               

               
Cow position:
               
chr5:50870334-50870515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
249-521
               

               
Cow position:
               
chr5:35449049-35449312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 140
               

               
Conread position:
               
250-551
               

               
Cow position:
               
chr5:26370495-26370789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
250-552
               

               
Cow position:
               
chr5:23169022-23168719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 64
               

               
Conread position:
               
253-553
               

               
Cow position:
               
chr5:45409125-45409431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
23, 129
               

               
Conread position:
               
253-557
               

               
Cow position:
               
chr5:56518410-56518110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 182
               

               
Conread position:
               
254-496
               

               
Cow position:
               
chr5:1027891-1027642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 44
               

               
Conread position:
               
255-516
               

               
Cow position:
               
chr5:75230485-75230738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 144
               

               
Conread position:
               
255-553
               

               
Cow position:
               
chr5:57575567-57575881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 253
               

               
Conread position:
               
255-554
               

               
Cow position:
               
chr5:50943352-50943048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
64, 179
               

               
Conread position:
               
256-548
               

               
Cow position:
               
chr5:69731320-69731603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
150, 73
               

               
Conread position:
               
258-553
               

               
Cow position:
               
chr5:34561813-34562125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
61, 245
               

               
Conread position:
               
259-507
               

               
Cow position:
               
chr5:1678204-1678454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
7, 68
               

               
Conread position:
               
259-553
               

               
Cow position:
               
chr5:8163018-8162710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
57, 244
               

               
Conread position:
               
260-425
               

               
Cow position:
               
chr5:74019964-74019795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
260-554
               

               
Cow position:
               
chr5:22643411-22643123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 123
               

               
Conread position:
               
265-548
               

               
Cow position:
               
chr5:4220792-4221081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 201
               

               
Conread position:
               
265-548
               

               
Cow position:
               
chr5:7755741-7755466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
194, 43
               

               
Conread position:
               
265-553
               

               
Cow position:
               
chr5:4322222-4322520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
54, 81
               

               
Conread position:
               
265-553
               

               
Cow position:
               
chr5:57591502-57591796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 112
               

               
Conread position:
               
265-553
               

               
Cow position:
               
chr5:69461146-69461443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
50, 229
               

               
Conread position:
               
265-554
               

               
Cow position:
               
chr5:48010035-48009750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
54, 187
               

               
Conread position:
               
267-481
               

               
Cow position:
               
chr5:17644842-17644616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
269-517
               

               
Cow position:
               
chr5:6670382-6670121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
50, 135
               

               
Conread position:
               
270-553
               

               
Cow position:
               
chr5:5855696-5855966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 77
               

               
Conread position:
               
270-554
               

               
Cow position:
               
chr5:37808848-37808554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 49
               

               
Conread position:
               
270-556
               

               
Cow position:
               
chr5:34624785-34625071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
60, 98
               

               
Conread position:
               
271-417
               

               
Cow position:
               
chr5:57576031-57576184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
271-554
               

               
Cow position:
               
chr5:55928760-55929053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 107
               

               
Conread position:
               
272-446
               

               
Cow position:
               
chr5:39242371-39242194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
272-452
               

               
Cow position:
               
chr5:66281230-66281415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
37, 140
               

               
Conread position:
               
276-417
               

               
Cow position:
               
chr5:45026095-45025950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
43, 130
               

               
Conread position:
               
277-510
               

               
Cow position:
               
chr5:28957793-28957549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 158
               

               
Conread position:
               
277-550
               

               
Cow position:
               
chr5:6286603-6286328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
279-535
               

               
Cow position:
               
chr5:3639656-3639404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 48
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr5:67645308-67645050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
148, 42
               

               
Conread position:
               
281-553
               

               
Cow position:
               
chr5:59115208-59115490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
44, 224
               

               
Conread position:
               
285-553
               

               
Cow position:
               
chr5:41010165-41009896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
33, 116
               

               
Conread position:
               
285-553
               

               
Cow position:
               
chr5:56014566-56014839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
34, 111
               

               
Conread position:
               
285-553
               

               
Cow position:
               
chr5:64697612-64697890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 118
               

               
Conread position:
               
287-548
               

               
Cow position:
               
chr5:30629324-30629053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
26, 207
               

               
Conread position:
               
293-548
               

               
Cow position:
               
chr5:46426011-46425752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 118
               

               
Conread position:
               
293-554
               

               
Cow position:
               
chr5:1396465-1396709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
294-467
               

               
Cow position:
               
chr5:41486896-41486713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
294-504
               

               
Cow position:
               
chr5:23866315-23866112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
157, 16
               

               
Conread position:
               
294-545
               

               
Cow position:
               
chr5:69520736-69520991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
294-553
               

               
Cow position:
               
chr5:44028456-44028199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
89, 118
               

               
Conread position:
               
294-554
               

               
Cow position:
               
chr5:35247265-35247001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 97
               

               
Conread position:
               
296-474
               

               
Cow position:
               
chr5:44849880-44849700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
297-491
               

               
Cow position:
               
chr5:51801121-51800923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chr5:11540200-11539955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 155
               

               
Conread position:
               
297-557
               

               
Cow position:
               
chr5:57768129-57767873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
298-485
               

               
Cow position:
               
chr5:71579023-71579218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
298-544
               

               
Cow position:
               
chr5:12673610-12673379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
128, 19
               

               
Conread position:
               
298-549
               

               
Cow position:
               
chr5:44726477-44726230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
121, 131
               

               
Conread position:
               
298-553
               

               
Cow position:
               
chr5:59631335-59631582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
299-546
               

               
Cow position:
               
chr5:56317149-56317390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
128, 11
               

               
Conread position:
               
299-548
               

               
Cow position:
               
chr5:46512912-46512666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
128, 11
               

               
Conread position:
               
299-554
               

               
Cow position:
               
chr5:30950065-30949806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 11
               

               
Conread position:
               
299-554
               

               
Cow position:
               
chr5:55955760-55956015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
299-557
               

               
Cow position:
               
chr5:52667881-52668149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
65, 23
               

               
Conread position:
               
301-554
               

               
Cow position:
               
chr5:56680098-56680365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
21, 197
               

               
Conread position:
               
301-562
               

               
Cow position:
               
chr5:35229281-35229017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
303-554
               

               
Cow position:
               
chr5:35459445-35459184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
304-553
               

               
Cow position:
               
chr5:19523751-19524008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
304-554
               

               
Cow position:
               
chr5:29844134-29844389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
123, 190
               

               
Conread position:
               
305-553
               

               
Cow position:
               
chr5:44447011-44446757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
307-546
               

               
Cow position:
               
chr5:57101918-57101679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 132
               

               
Conread position:
               
308-453
               

               
Cow position:
               
chr5:19294627-19294480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
118, 34
               

               
Conread position:
               
308-517
               

               
Cow position:
               
chr5:12566869-12566669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 72
               

               
Conread position:
               
308-547
               

               
Cow position:
               
chr5:45574475-45574722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
308-550
               

               
Cow position:
               
chr5:48405319-48405072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
308-554
               

               
Cow position:
               
chr5:29097218-29097477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 194
               

               
Conread position:
               
308-557
               

               
Cow position:
               
chr5:59384833-59384578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
309-547
               

               
Cow position:
               
chr5:41452803-41452570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 27
               

               
Conread position:
               
309-548
               

               
Cow position:
               
chr5:42050411-42050655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
97, 166
               

               
Conread position:
               
309-554
               

               
Cow position:
               
chr5:67540343-67540092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
105, 186
               

               
Conread position:
               
312-553
               

               
Cow position:
               
chr5:58490580-58490837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 90
               

               
Conread position:
               
312-553
               

               
Cow position:
               
chr5:59717611-59717844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
198, 73
               

               
Conread position:
               
312-557
               

               
Cow position:
               
chr5:32673199-32672955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
312-558
               

               
Cow position:
               
chr5:33560870-33560621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
313-554
               

               
Cow position:
               
chr5:62638771-62639013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
123, 109
               

               
Conread position:
               
315-557
               

               
Cow position:
               
chr5:63427140-63426893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
315-558
               

               
Cow position:
               
chr5:45273635-45273388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
52, 179
               

               
Conread position:
               
316-551
               

               
Cow position:
               
chr5:7552552-7552310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
70, 180
               

               
Conread position:
               
316-554
               

               
Cow position:
               
chr5:14473550-14473295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 7
               

               
Conread position:
               
316-554
               

               
Cow position:
               
chr5:54768043-54767800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 160
               

               
Conread position:
               
317-482
               

               
Cow position:
               
chr5:38647227-38647394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
110, 12
               

               
Conread position:
               
317-496
               

               
Cow position:
               
chr5:50972398-50972581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 94
               

               
Conread position:
               
317-504
               

               
Cow position:
               
chr5:3668769-3668957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
44, 96
               

               
Conread position:
               
317-508
               

               
Cow position:
               
chr5:29980114-29979919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 5
               

               
Conread position:
               
317-522
               

               
Cow position:
               
chr5:21920239-21920457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 184
               

               
Conread position:
               
317-527
               

               
Cow position:
               
chr5:991334-991546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
109, 172
               

               
Conread position:
               
317-542
               

               
Cow position:
               
chr5:14629945-14629713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
102, 177
               

               
Conread position:
               
317-548
               

               
Cow position:
               
chr5:12761248-12761015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
317-549
               

               
Cow position:
               
chr5:36255392-36255153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
317-553
               

               
Cow position:
               
chr5:44028874-44028645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
208, 51
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr5:16214555-16214796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 32
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr5:23529405-23529173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
110, 25
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr5:39874991-39875233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
46, 177
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr5:47696571-47696341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
111, 9
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr5:51935054-51935298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
43, 180
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr5:54060145-54060385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
45, 10
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr5:64027140-64026910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr5:65883908-65883663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
47, 181
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr5:65967860-65967622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
127, 89
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr5:66972295-66972538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
48, 178
               

               
Conread position:
               
317-556
               

               
Cow position:
               
chr5:73168130-73167900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
318-539
               

               
Cow position:
               
chr5:33552539-33552329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
318-554
               

               
Cow position:
               
chr5:64140399-64140647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
41, 185
               

               
Conread position:
               
318-558
               

               
Cow position:
               
chr5:66581832-66582077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
44, 141
               

               
Conread position:
               
319-480
               

               
Cow position:
               
chr5:47721408-47721581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
319-547
               

               
Cow position:
               
chr5:72951709-72951946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
27, 179
               

               
Conread position:
               
320-488
               

               
Cow position:
               
chr5:41227113-41226942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
320-538
               

               
Cow position:
               
chr5:6891146-6890927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
104, 7
               

               
Conread position:
               
321-553
               

               
Cow position:
               
chr5:49474670-49474437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
322-552
               

               
Cow position:
               
chr5:18289002-18289229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
42, 164
               

               
Conread position:
               
322-556
               

               
Cow position:
               
chr5:60747403-60747170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
105, 21
               

               
Conread position:
               
323-497
               

               
Cow position:
               
chr5:64181701-64181523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 112
               

               
Conread position:
               
323-553
               

               
Cow position:
               
chr5:19335913-19335673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
41, 176
               

               
Conread position:
               
323-554
               

               
Cow position:
               
chr5:28035621-28035852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
102, 28
               

               
Conread position:
               
327-557
               

               
Cow position:
               
chr5:53710815-53710577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
37, 5
               

               
Conread position:
               
327-557
               

               
Cow position:
               
chr5:57419915-57419682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
26, 166
               

               
Conread position:
               
330-553
               

               
Cow position:
               
chr5:16179644-16179403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
330-554
               

               
Cow position:
               
chr5:7057525-7057293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
37, 168
               

               
Conread position:
               
330-554
               

               
Cow position:
               
chr5:49440991-49440762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
96, 72
               

               
Conread position:
               
330-557
               

               
Cow position:
               
chr5:49919805-49920036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
334-496
               

               
Cow position:
               
chr5:60448100-60448270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
335-553
               

               
Cow position:
               
chr5:43402790-43403013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
335-557
               

               
Cow position:
               
chr5:12901801-12902029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
29, 154
               

               
Conread position:
               
336-554
               

               
Cow position:
               
chr5:13717684-13717461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
28, 146
               

               
Conread position:
               
336-557
               

               
Cow position:
               
chr5:57561404-57561635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 150
               

               
Conread position:
               
337-531
               

               
Cow position:
               
chr5:7697893-7698086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 110
               

               
Conread position:
               
337-537
               

               
Cow position:
               
chr5:64168354-64168147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 162
               

               
Conread position:
               
337-548
               

               
Cow position:
               
chr5:42670968-42670761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
111, 46
               

               
Conread position:
               
337-548
               

               
Cow position:
               
chr5:60016055-60016268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
88, 154
               

               
Conread position:
               
337-554
               

               
Cow position:
               
chr5:58446691-58446916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
76, 158
               

               
Conread position:
               
338-549
               

               
Cow position:
               
chr5:53946782-53947001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
12, 161
               

               
Conread position:
               
339-547
               

               
Cow position:
               
chr5:60183691-60183907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
88, 163
               

               
Conread position:
               
339-550
               

               
Cow position:
               
chr5:23678814-23678597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
25, 158
               

               
Conread position:
               
340-554
               

               
Cow position:
               
chr5:35125945-35126164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 9
               

               
Conread position:
               
342-549
               

               
Cow position:
               
chr5:43371305-43371091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
22, 132
               

               
Conread position:
               
342-552
               

               
Cow position:
               
chr5:56635793-56636002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
344-553
               

               
Cow position:
               
chr5:62378686-62378888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
345-556
               

               
Cow position:
               
chr5:12557396-12557176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
346-541
               

               
Cow position:
               
chr5:35785079-35784894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
349-554
               

               
Cow position:
               
chr5:41293980-41294189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
15, 125
               

               
Conread position:
               
349-557
               

               
Cow position:
               
chr5:36650449-36650665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
350-554
               

               
Cow position:
               
chr5:55019194-55019401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 142
               

               
Conread position:
               
352-480
               

               
Cow position:
               
chr5:29860250-29860388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
352-537
               

               
Cow position:
               
chr5:57527014-57526832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
352-548
               

               
Cow position:
               
chr5:23357238-23357432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 138
               

               
Conread position:
               
352-548
               

               
Cow position:
               
chr5:30232802-30233011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
33, 151
               

               
Conread position:
               
359-546
               

               
Cow position:
               
chr5:34192812-34193007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
68, 33
               

               
Conread position:
               
360-557
               

               
Cow position:
               
chr5:12556239-12556430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
363-554
               

               
Cow position:
               
chr5:1087282-1087090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
363-554
               

               
Cow position:
               
chr5:63234915-63234720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 126
               

               
Conread position:
               
364-552
               

               
Cow position:
               
chr5:47323380-47323569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
63, 78
               

               
Conread position:
               
365-549
               

               
Cow position:
               
chr5:59873175-59872976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 134
               

               
Conread position:
               
365-554
               

               
Cow position:
               
chr5:50575701-50575892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
61, 127
               

               
Conread position:
               
366-557
               

               
Cow position:
               
chr5:33833961-33834152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
60, 125
               

               
Conread position:
               
366-557
               

               
Cow position:
               
chr5:61914487-61914676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
366-557
               

               
Cow position:
               
chr5:71015963-71015773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
60, 54
               

               
Conread position:
               
368-540
               

               
Cow position:
               
chr5:46129742-46129572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
130, 24
               

               
Conread position:
               
368-554
               

               
Cow position:
               
chr5:46023138-46022954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
136, 24
               

               
Conread position:
               
370-540
               

               
Cow position:
               
chr5:19752226-19752397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
44, 125
               

               
Conread position:
               
371-549
               

               
Cow position:
               
chr5:20995175-20994982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
377-557
               

               
Cow position:
               
chr5:6444226-6444043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
381-554
               

               
Cow position:
               
chr5:11769200-11769378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
23, 63
               

               
Conread position:
               
385-546
               

               
Cow position:
               
chr5:59627038-59626870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 113
               

               
Conread position:
               
385-548
               

               
Cow position:
               
chr5:1461023-1461192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 110
               

               
Conread position:
               
385-552
               

               
Cow position:
               
chr5:43604079-43604246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
385-554
               

               
Cow position:
               
chr5:30805104-30805273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 107
               

               
Conread position:
               
385-558
               

               
Cow position:
               
chr5:20843464-20843281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 114
               

               
Conread position:
               
386-537
               

               
Cow position:
               
chr5:30247587-30247430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
390-554
               

               
Cow position:
               
chr5:63627584-63627426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 103
               

               
Conread position:
               
392-554
               

               
Cow position:
               
chr5:45420191-45420028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
393-554
               

               
Cow position:
               
chr5:55796017-55795857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
396-554
               

               
Cow position:
               
chr5:57156367-57156203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
402-554
               

               
Cow position:
               
chr5:58555093-58555246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
403-552
               

               
Cow position:
               
chr5:23527673-23527524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
404-553
               

               
Cow position:
               
chr5:4267633-4267778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
406-554
               

               
Cow position:
               
chr5:50101421-50101265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
417-557
               

               
Cow position:
               
chr5:48867493-48867352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
427-554
               

               
Cow position:
               
chr5:45574382-45574256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
427-554
               

               
Cow position:
               
chr5:49501842-49501715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
14, 63
               

               
Conread position:
               
427-554
               

               
Cow position:
               
chr5:57101543-57101414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 66
               

               
Conread position:
               
427-556
               

               
Cow position:
               
chr5:55350930-55350799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
427-557
               

               
Cow position:
               
chr5:61007048-61007177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
430-558
               

               
Cow position:
               
chr5:52137922-52138050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
431-548
               

               
Cow position:
               
chr5:52108280-52108165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
436-557
               

               
Cow position:
               
chr5:43844670-43844551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
437-554
               

               
Cow position:
               
chr5:9369278-9369162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
437-554
               

               
Cow position:
               
chr5:57230344-57230229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
438-557
               

               
Cow position:
               
chr5:11562728-11562610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
440-554
               

               
Cow position:
               
chr5:44163371-44163259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
441-554
               

               
Cow position:
               
chr5:57736696-57736590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
444-554
               

               
Cow position:
               
chr5:59627101-59627209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
445-554
               

               
Cow position:
               
chr5:60948135-60948241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
447-553
               

               
Cow position:
               
chr5:57062525-57062421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
447-554
               

               
Cow position:
               
chr5:3743326-3743431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
447-554
               

               
Cow position:
               
chr5:33273699-33273802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
450-554
               

               
Cow position:
               
chr5:26723455-26723556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               
Show alignments to all cow chromosomes.