Non-Coding RNA Search

Cow genome map


           Conread name:
           Pig2-108O01
        

               Conread position:
               183-524
               

               Cow position:
               chr5:59384355-59384696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               70, 9
               

               Conread position:
               188-523
               

               Cow position:
               chr5:30303216-30302889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 193
               

               Conread position:
               214-477
               

               Cow position:
               chr5:21338959-21339230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               159, 38
               

               Conread position:
               227-532
               

               Cow position:
               chr5:14550287-14550597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               59, 22
               

               Conread position:
               230-400
               

               Cow position:
               chr5:17253943-17254108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               230-533
               

               Cow position:
               chr5:16214970-16214668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               11, 23
               

               Conread position:
               234-521
               

               Cow position:
               chr5:55965614-55965899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               136, 16
               

               Conread position:
               235-489
               

               Cow position:
               chr5:49821722-49821455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               238-524
               

               Cow position:
               chr5:59627375-59627092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               8, 62
               

               Conread position:
               239-533
               

               Cow position:
               chr5:59395941-59395642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               145, 5
               

               Conread position:
               240-433
               

               Cow position:
               chr5:28660508-28660313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               138, 30
               

               Conread position:
               241-508
               

               Cow position:
               chr5:5016702-5016437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 222
               

               Conread position:
               241-533
               

               Cow position:
               chr5:56153880-56153598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               38, 8
               

               Conread position:
               243-484
               

               Cow position:
               chr5:40122329-40122578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               244-461
               

               Cow position:
               chr5:29599279-29599491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               167
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               244-488
               

               Cow position:
               chr5:47220768-47220516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               38, 61
               

               Conread position:
               247-376
               

               Cow position:
               chr5:54375091-54374960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               102
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               248-453
               

               Cow position:
               chr5:26149312-26149097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               13, 114
               

               Conread position:
               248-529
               

               Cow position:
               chr5:63832185-63831914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               52, 28
               

               Conread position:
               250-483
               

               Cow position:
               chr5:42704029-42703804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               223, 78
               

               Conread position:
               251-526
               

               Cow position:
               chr5:17566172-17566450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               22, 72
               

               Conread position:
               252-424
               

               Cow position:
               chr5:43982585-43982408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               252-472
               

               Cow position:
               chr5:25462355-25462133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               25, 126
               

               Conread position:
               253-446
               

               Cow position:
               chr5:17537412-17537605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               12, 47
               

               Conread position:
               253-454
               

               Cow position:
               chr5:67340144-67339945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               126, 20
               

               Conread position:
               253-471
               

               Cow position:
               chr5:51012268-51012044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               253-533
               

               Cow position:
               chr5:29060672-29060937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               204, 0
               

               Conread position:
               253-533
               

               Cow position:
               chr5:30845380-30845095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               211
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               27, 145
               

               Conread position:
               254-468
               

               Cow position:
               chr5:65140559-65140344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               124, 9
               

               Conread position:
               255-433
               

               Cow position:
               chr5:22898052-22898226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               14, 71
               

               Conread position:
               255-462
               

               Cow position:
               chr5:58401827-58401623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               255-514
               

               Cow position:
               chr5:11562466-11562721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               207, 18
               

               Conread position:
               255-523
               

               Cow position:
               chr5:12673216-12673480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               124, 50
               

               Conread position:
               256-533
               

               Cow position:
               chr5:16937766-16938038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 126
               

               Conread position:
               257-521
               

               Cow position:
               chr5:35513483-35513210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               48, 22
               

               Conread position:
               258-378
               

               Cow position:
               chr5:44751693-44751814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               94
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               258-476
               

               Cow position:
               chr5:31527130-31527356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               22, 67
               

               Conread position:
               258-498
               

               Cow position:
               chr5:33482979-33482739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               30, 58
               

               Conread position:
               258-507
               

               Cow position:
               chr5:50824840-50824601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               258-508
               

               Cow position:
               chr5:56549628-56549372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               7, 28
               

               Conread position:
               259-433
               

               Cow position:
               chr5:3626920-3627094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               48, 40
               

               Conread position:
               259-446
               

               Cow position:
               chr5:47960006-47960191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               118, 17
               

               Conread position:
               259-481
               

               Cow position:
               chr5:22957667-22957445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               25, 108
               

               Conread position:
               260-376
               

               Cow position:
               chr5:67600945-67600830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               92
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               260-476
               

               Cow position:
               chr5:46710840-46710622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               100, 20
               

               Conread position:
               261-461
               

               Cow position:
               chr5:34918602-34918401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               159
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               262-523
               

               Cow position:
               chr5:74643427-74643682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               262-532
               

               Cow position:
               chr5:21617714-21617446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 247
               

               Conread position:
               264-458
               

               Cow position:
               chr5:35235431-35235631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               264-493
               

               Cow position:
               chr5:37842024-37842256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               103, 35
               

               Conread position:
               264-533
               

               Cow position:
               chr5:25598086-25597820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               17, 49
               

               Conread position:
               265-499
               

               Cow position:
               chr5:26167674-26167439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               115, 42
               

               Conread position:
               266-422
               

               Cow position:
               chr5:56563999-56563848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               266-457
               

               Cow position:
               chr5:19968105-19968300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 57
               

               Conread position:
               266-468
               

               Cow position:
               chr5:12724138-12724344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               112, 33
               

               Conread position:
               266-477
               

               Cow position:
               chr5:5808353-5808135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               21, 10
               

               Conread position:
               266-485
               

               Cow position:
               chr5:15991390-15991608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               11, 124
               

               Conread position:
               266-488
               

               Cow position:
               chr5:36823122-36822915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               267-486
               

               Cow position:
               chr5:62011938-62011713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               27, 60
               

               Conread position:
               269-529
               

               Cow position:
               chr5:13717318-13717580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               16, 68
               

               Conread position:
               270-516
               

               Cow position:
               chr5:61049584-61049332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               270-533
               

               Cow position:
               chr5:3772096-3771832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               18, 133
               

               Conread position:
               270-533
               

               Cow position:
               chr5:61456098-61455830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               13, 192
               

               Conread position:
               271-433
               

               Cow position:
               chr5:1178204-1178037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               271-437
               

               Cow position:
               chr5:4728317-4728153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               271-451
               

               Cow position:
               chr5:6245416-6245598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               271-474
               

               Cow position:
               chr5:32935999-32935786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               27, 167
               

               Conread position:
               271-518
               

               Cow position:
               chr5:50723294-50723044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               106, 14
               

               Conread position:
               271-532
               

               Cow position:
               chr5:7057149-7057417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 28
               

               Conread position:
               271-533
               

               Cow position:
               chr5:33273947-33273675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 186
               

               Conread position:
               272-438
               

               Cow position:
               chr5:58487619-58487453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               99, 25
               

               Conread position:
               272-533
               

               Cow position:
               chr5:42845349-42845613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               106, 55
               

               Conread position:
               272-533
               

               Cow position:
               chr5:50101130-50101394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 13
               

               Conread position:
               272-533
               

               Cow position:
               chr5:61726204-61725949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               249, 27
               

               Conread position:
               273-430
               

               Cow position:
               chr5:75711890-75712052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               86, 122
               

               Conread position:
               273-455
               

               Cow position:
               chr5:15770206-15770394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               95, 26
               

               Conread position:
               273-499
               

               Cow position:
               chr5:19811766-19811549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               95, 14
               

               Conread position:
               273-520
               

               Cow position:
               chr5:64026763-64027023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               41, 26
               

               Conread position:
               273-520
               

               Cow position:
               chr5:65679727-65679974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               187
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               59, 26
               

               Conread position:
               273-522
               

               Cow position:
               chr5:51053402-51053658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               101, 25
               

               Conread position:
               273-523
               

               Cow position:
               chr5:873290-873031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               22, 63
               

               Conread position:
               273-524
               

               Cow position:
               chr5:26467875-26467618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               19, 49
               

               Conread position:
               273-533
               

               Cow position:
               chr5:17999248-17999509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               28, 85
               

               Conread position:
               274-407
               

               Cow position:
               chr5:32672587-32672726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               106
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               274-457
               

               Cow position:
               chr5:55943473-55943657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               97, 25
               

               Conread position:
               274-462
               

               Cow position:
               chr5:36143219-36143038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               140
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               274-476
               

               Cow position:
               chr5:24915279-24915487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               274-490
               

               Cow position:
               chr5:34288009-34288224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               104, 25
               

               Conread position:
               274-493
               

               Cow position:
               chr5:69765789-69766004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               97, 24
               

               Conread position:
               274-496
               

               Cow position:
               chr5:36038761-36038981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 11
               

               Conread position:
               274-504
               

               Cow position:
               chr5:66339321-66339090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               27, 88
               

               Conread position:
               274-508
               

               Cow position:
               chr5:64060695-64060453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               274-519
               

               Cow position:
               chr5:70951644-70951883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               19, 106
               

               Conread position:
               274-520
               

               Cow position:
               chr5:33834284-33834038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               96, 7
               

               Conread position:
               274-521
               

               Cow position:
               chr5:60514776-60515033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 168
               

               Conread position:
               274-527
               

               Cow position:
               chr5:5760062-5760325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               27, 158
               

               Conread position:
               274-528
               

               Cow position:
               chr5:22242529-22242784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               198
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               167, 25
               

               Conread position:
               274-531
               

               Cow position:
               chr5:45405291-45405027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               44, 23
               

               Conread position:
               274-533
               

               Cow position:
               chr5:12322568-12322823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               121, 11
               

               Conread position:
               275-407
               

               Cow position:
               chr5:57561871-57561736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               275-483
               

               Cow position:
               chr5:37933960-37933747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               103, 164
               

               Conread position:
               275-525
               

               Cow position:
               chr5:35826842-35826593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               60, 32
               

               Conread position:
               275-525
               

               Cow position:
               chr5:61914816-61914556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               103, 250
               

               Conread position:
               276-388
               

               Cow position:
               chr5:56428328-56428440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               93
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               28, 5
               

               Conread position:
               276-429
               

               Cow position:
               chr5:61593507-61593353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               102, 28
               

               Conread position:
               276-437
               

               Cow position:
               chr5:57585119-57584955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               128
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               75, 9
               

               Conread position:
               276-451
               

               Cow position:
               chr5:56643315-56643132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               276-456
               

               Cow position:
               chr5:63300321-63300138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               97, 23
               

               Conread position:
               276-458
               

               Cow position:
               chr5:29010492-29010314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               19, 49
               

               Conread position:
               276-461
               

               Cow position:
               chr5:60207947-60207763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               101, 21
               

               Conread position:
               276-471
               

               Cow position:
               chr5:54341008-54340810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               102, 21
               

               Conread position:
               276-477
               

               Cow position:
               chr5:6876721-6876929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               276-478
               

               Cow position:
               chr5:46755369-46755166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               102, 5
               

               Conread position:
               276-485
               

               Cow position:
               chr5:56434128-56433911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               276-493
               

               Cow position:
               chr5:51289357-51289568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               276-499
               

               Cow position:
               chr5:44446632-44446848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               276-505
               

               Cow position:
               chr5:52136807-52137044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               276-507
               

               Cow position:
               chr5:2240747-2240980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               102, 21
               

               Conread position:
               276-521
               

               Cow position:
               chr5:55177126-55176890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               11, 62
               

               Conread position:
               276-523
               

               Cow position:
               chr5:11426991-11427241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               24, 49
               

               Conread position:
               276-523
               

               Cow position:
               chr5:35246863-35247117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 9
               

               Conread position:
               276-527
               

               Cow position:
               chr5:29970955-29970694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               101, 21
               

               Conread position:
               276-531
               

               Cow position:
               chr5:15364113-15363866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               252, 25
               

               Conread position:
               276-531
               

               Cow position:
               chr5:36868982-36868721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               195
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               24, 36
               

               Conread position:
               276-531
               

               Cow position:
               chr5:52001379-52001636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               24, 49
               

               Conread position:
               276-531
               

               Cow position:
               chr5:63241222-63240961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               102, 23
               

               Conread position:
               276-533
               

               Cow position:
               chr5:35208506-35208247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               103, 29
               

               Conread position:
               276-533
               

               Cow position:
               chr5:57074094-57074351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               199
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               107, 23
               

               Conread position:
               277-433
               

               Cow position:
               chr5:54150077-54149929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               277-485
               

               Cow position:
               chr5:64843719-64843940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               277-503
               

               Cow position:
               chr5:72895929-72895698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               277-522
               

               Cow position:
               chr5:57062286-57062536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 28
               

               Conread position:
               277-531
               

               Cow position:
               chr5:12557043-12557304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               277-532
               

               Cow position:
               chr5:72902997-72903246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               114, 121
               

               Conread position:
               277-533
               

               Cow position:
               chr5:57372048-57371779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               278-458
               

               Cow position:
               chr5:52211446-52211629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               278-470
               

               Cow position:
               chr5:57086821-57087017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               90, 21
               

               Conread position:
               278-530
               

               Cow position:
               chr5:43391266-43391022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               165, 21
               

               Conread position:
               279-522
               

               Cow position:
               chr5:23527407-23527638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               21, 83
               

               Conread position:
               280-467
               

               Cow position:
               chr5:1678831-1678637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               20, 127
               

               Conread position:
               280-476
               

               Cow position:
               chr5:29829648-29829849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               98, 24
               

               Conread position:
               280-484
               

               Cow position:
               chr5:20127147-20126935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               101, 41
               

               Conread position:
               280-531
               

               Cow position:
               chr5:26548904-26549156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 19
               

               Conread position:
               281-399
               

               Cow position:
               chr5:55414202-55414322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               97, 18
               

               Conread position:
               281-443
               

               Cow position:
               chr5:59958410-59958247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               20, 105
               

               Conread position:
               281-446
               

               Cow position:
               chr5:24108817-24108990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               281-455
               

               Cow position:
               chr5:48819516-48819334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               5, 42
               

               Conread position:
               281-461
               

               Cow position:
               chr5:52849319-52849140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               281-469
               

               Cow position:
               chr5:12339884-12340072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               91, 18
               

               Conread position:
               281-474
               

               Cow position:
               chr5:3817448-3817645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               281-474
               

               Cow position:
               chr5:8736039-8736237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               80, 18
               

               Conread position:
               281-476
               

               Cow position:
               chr5:25366337-25366145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               90, 24
               

               Conread position:
               281-476
               

               Cow position:
               chr5:46715721-46715522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               79, 18
               

               Conread position:
               281-476
               

               Cow position:
               chr5:57139755-57139953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               139, 18
               

               Conread position:
               281-485
               

               Cow position:
               chr5:71579697-71579492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               19, 51
               

               Conread position:
               281-487
               

               Cow position:
               chr5:1693852-1694059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               281-487
               

               Cow position:
               chr5:25495112-25495329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               99, 43
               

               Conread position:
               281-497
               

               Cow position:
               chr5:74581025-74580808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               98, 36
               

               Conread position:
               281-499
               

               Cow position:
               chr5:7177392-7177168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               281-503
               

               Cow position:
               chr5:55942142-55942367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               174
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               98, 16
               

               Conread position:
               281-506
               

               Cow position:
               chr5:75227974-75228189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               125, 77
               

               Conread position:
               281-518
               

               Cow position:
               chr5:2827614-2827372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               91, 43
               

               Conread position:
               281-518
               

               Cow position:
               chr5:6520245-6520009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 103
               

               Conread position:
               281-518
               

               Cow position:
               chr5:22667310-22667072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               16, 214
               

               Conread position:
               281-518
               

               Cow position:
               chr5:41935420-41935653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               90, 19
               

               Conread position:
               281-519
               

               Cow position:
               chr5:58519178-58519419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               89, 23
               

               Conread position:
               281-520
               

               Cow position:
               chr5:1247501-1247264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               97, 18
               

               Conread position:
               281-520
               

               Cow position:
               chr5:65552483-65552712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               96, 20
               

               Conread position:
               281-520
               

               Cow position:
               chr5:65760295-65760533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               81, 124
               

               Conread position:
               281-520
               

               Cow position:
               chr5:69333742-69333495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               20, 236
               

               Conread position:
               281-524
               

               Cow position:
               chr5:56014960-56014723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               183
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               281-525
               

               Cow position:
               chr5:46681485-46681732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               92, 18
               

               Conread position:
               281-526
               

               Cow position:
               chr5:33560500-33560744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               177
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               281-526
               

               Cow position:
               chr5:47602047-47601802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 69
               

               Conread position:
               281-529
               

               Cow position:
               chr5:11667946-11668197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 18
               

               Conread position:
               281-531
               

               Cow position:
               chr5:6572970-6572729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               239, 66
               

               Conread position:
               281-531
               

               Cow position:
               chr5:24995982-24996237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               93, 67
               

               Conread position:
               281-531
               

               Cow position:
               chr5:38833352-38833107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               102, 18
               

               Conread position:
               281-531
               

               Cow position:
               chr5:45225584-45225826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               94, 25
               

               Conread position:
               281-532
               

               Cow position:
               chr5:49920163-49919908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               81, 18
               

               Conread position:
               281-533
               

               Cow position:
               chr5:4280682-4280431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 18
               

               Conread position:
               281-533
               

               Cow position:
               chr5:8023976-8024211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               240, 50
               

               Conread position:
               281-533
               

               Cow position:
               chr5:18289358-18289114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               23, 181
               

               Conread position:
               282-433
               

               Cow position:
               chr5:57231869-57231717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               282-452
               

               Cow position:
               chr5:32976000-32975822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               87, 17
               

               Conread position:
               282-464
               

               Cow position:
               chr5:55749799-55749986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               94, 17
               

               Conread position:
               282-469
               

               Cow position:
               chr5:56477443-56477252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               94, 23
               

               Conread position:
               282-476
               

               Cow position:
               chr5:48061869-48062077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               20, 130
               

               Conread position:
               282-477
               

               Cow position:
               chr5:60117666-60117467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               117, 32
               

               Conread position:
               282-488
               

               Cow position:
               chr5:13270777-13270989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               95, 141
               

               Conread position:
               282-488
               

               Cow position:
               chr5:16185622-16185406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               282-493
               

               Cow position:
               chr5:57526688-57526901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               19, 145
               

               Conread position:
               282-516
               

               Cow position:
               chr5:44163135-44163369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               89, 62
               

               Conread position:
               282-518
               

               Cow position:
               chr5:15364509-15364267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               89, 123
               

               Conread position:
               282-520
               

               Cow position:
               chr5:30562166-30561928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               182
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               105, 94
               

               Conread position:
               282-531
               

               Cow position:
               chr5:44028073-44028319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               96, 23
               

               Conread position:
               282-533
               

               Cow position:
               chr5:14903828-14904087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               193
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               89, 57
               

               Conread position:
               282-533
               

               Cow position:
               chr5:70678408-70678657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               96, 17
               

               Conread position:
               283-474
               

               Cow position:
               chr5:14168083-14167886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               80, 161
               

               Conread position:
               283-488
               

               Cow position:
               chr5:62341268-62341056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               19, 42
               

               Conread position:
               283-533
               

               Cow position:
               chr5:55956147-55955891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 106
               

               Conread position:
               284-498
               

               Cow position:
               chr5:14920690-14920912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               284-500
               

               Cow position:
               chr5:57687345-57687570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               87, 15
               

               Conread position:
               284-517
               

               Cow position:
               chr5:65343864-65343622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               42, 15
               

               Conread position:
               284-531
               

               Cow position:
               chr5:71845690-71845931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               235, 38
               

               Conread position:
               284-533
               

               Cow position:
               chr5:2309322-2309573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               285-413
               

               Cow position:
               chr5:20736644-20736774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               285-434
               

               Cow position:
               chr5:48104494-48104343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               92, 14
               

               Conread position:
               285-457
               

               Cow position:
               chr5:46479013-46479183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               94, 14
               

               Conread position:
               285-461
               

               Cow position:
               chr5:60100696-60100525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               285-461
               

               Cow position:
               chr5:60154001-60153830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               285-469
               

               Cow position:
               chr5:20345773-20345584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               79, 141
               

               Conread position:
               285-470
               

               Cow position:
               chr5:41226770-41226960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               86, 14
               

               Conread position:
               285-474
               

               Cow position:
               chr5:41522449-41522636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               111
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               285-475
               

               Cow position:
               chr5:19972765-19972963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               285-475
               

               Cow position:
               chr5:31648649-31648463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               106, 14
               

               Conread position:
               285-476
               

               Cow position:
               chr5:11303338-11303150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               25, 14
               

               Conread position:
               285-481
               

               Cow position:
               chr5:17987659-17987858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               76, 20
               

               Conread position:
               285-495
               

               Cow position:
               chr5:46063729-46063518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               93, 39
               

               Conread position:
               285-498
               

               Cow position:
               chr5:49407158-49407375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               93, 20
               

               Conread position:
               285-498
               

               Cow position:
               chr5:54751042-54750825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               86, 16
               

               Conread position:
               285-505
               

               Cow position:
               chr5:34533555-34533336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               193, 14
               

               Conread position:
               285-506
               

               Cow position:
               chr5:51246903-51247121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               97, 14
               

               Conread position:
               285-508
               

               Cow position:
               chr5:26497452-26497669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               15, 53
               

               Conread position:
               285-520
               

               Cow position:
               chr5:56860678-56860443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               181
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               76, 154
               

               Conread position:
               285-521
               

               Cow position:
               chr5:58694-58937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               15, 155
               

               Conread position:
               285-524
               

               Cow position:
               chr5:47757006-47756767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               85, 20
               

               Conread position:
               285-524
               

               Cow position:
               chr5:71015650-71015898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               93, 72
               

               Conread position:
               285-525
               

               Cow position:
               chr5:39036017-39035771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 124
               

               Conread position:
               285-533
               

               Cow position:
               chr5:30487462-30487225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               134, 98
               

               Conread position:
               285-533
               

               Cow position:
               chr5:34976606-34976859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               86, 17
               

               Conread position:
               285-533
               

               Cow position:
               chr5:54875459-54875716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               93, 14
               

               Conread position:
               286-415
               

               Cow position:
               chr5:44836768-44836643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               286-423
               

               Cow position:
               chr5:43408106-43408247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               111
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               286-430
               

               Cow position:
               chr5:14000872-14000731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               91, 13
               

               Conread position:
               286-439
               

               Cow position:
               chr5:18579122-18578968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               111, 13
               

               Conread position:
               286-480
               

               Cow position:
               chr5:15077401-15077599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               90, 13
               

               Conread position:
               286-483
               

               Cow position:
               chr5:36370507-36370312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               91, 13
               

               Conread position:
               286-492
               

               Cow position:
               chr5:24464973-24464768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               14, 62
               

               Conread position:
               286-519
               

               Cow position:
               chr5:6528899-6528680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               14, 39
               

               Conread position:
               286-520
               

               Cow position:
               chr5:52853200-52852967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               108, 13
               

               Conread position:
               286-521
               

               Cow position:
               chr5:44847793-44848029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               180
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               187, 96
               

               Conread position:
               286-529
               

               Cow position:
               chr5:35459062-35459308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               286-531
               

               Cow position:
               chr5:65753092-65752843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               66, 24
               

               Conread position:
               286-533
               

               Cow position:
               chr5:59626739-59626991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 15
               

               Conread position:
               286-533
               

               Cow position:
               chr5:66972664-66972411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               193
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               84, 55
               

               Conread position:
               287-378
               

               Cow position:
               chr5:54067768-54067859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               92
               

               Alignm identity:
               78
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               287-386
               

               Cow position:
               chr5:33256221-33256320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               100
               

               Alignm identity:
               84
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               287-386
               

               Cow position:
               chr5:36251449-36251350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               100
               

               Alignm identity:
               84
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               287-403
               

               Cow position:
               chr5:21374883-21375001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               96
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               287-408
               

               Cow position:
               chr5:44868170-44868292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               100
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               85, 111
               

               Conread position:
               287-410
               

               Cow position:
               chr5:40740093-40740223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               287-432
               

               Cow position:
               chr5:44868587-44868441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               90, 12
               

               Conread position:
               287-443
               

               Cow position:
               chr5:25450176-25450027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               287-454
               

               Cow position:
               chr5:4824386-4824210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               287-454
               

               Cow position:
               chr5:43611932-43611760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               83, 37
               

               Conread position:
               287-458
               

               Cow position:
               chr5:9559646-9559479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               287-461
               

               Cow position:
               chr5:71387432-71387256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               148, 77
               

               Conread position:
               287-468
               

               Cow position:
               chr5:55162862-55162674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               287-470
               

               Cow position:
               chr5:22186639-22186464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               287-470
               

               Cow position:
               chr5:57303006-57302811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               287-471
               

               Cow position:
               chr5:69427230-69427408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               107, 18
               

               Conread position:
               287-473
               

               Cow position:
               chr5:31234937-31234753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               163, 73
               

               Conread position:
               287-473
               

               Cow position:
               chr5:45436267-45436453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               92, 26
               

               Conread position:
               287-474
               

               Cow position:
               chr5:19294287-19294484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               77, 12
               

               Conread position:
               287-484
               

               Cow position:
               chr5:53842523-53842325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               44, 12
               

               Conread position:
               287-485
               

               Cow position:
               chr5:50578931-50579135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               287-488
               

               Cow position:
               chr5:6086109-6086315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               96, 12
               

               Conread position:
               287-488
               

               Cow position:
               chr5:22102785-22102588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               88, 12
               

               Conread position:
               287-491
               

               Cow position:
               chr5:2288035-2288218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               287-493
               

               Cow position:
               chr5:57497194-57497404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               90, 12
               

               Conread position:
               287-498
               

               Cow position:
               chr5:54312832-54312619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 21
               

               Conread position:
               287-503
               

               Cow position:
               chr5:42050777-42050566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               98, 52
               

               Conread position:
               287-507
               

               Cow position:
               chr5:12654676-12654902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               287-507
               

               Cow position:
               chr5:22795439-22795226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               287-509
               

               Cow position:
               chr5:43858185-43858412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               175
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               75, 165
               

               Conread position:
               287-509
               

               Cow position:
               chr5:55068932-55068713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               175
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               92, 12
               

               Conread position:
               287-515
               

               Cow position:
               chr5:43922938-43923151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               179
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               287-518
               

               Cow position:
               chr5:72006649-72006865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               287-519
               

               Cow position:
               chr5:57489723-57489948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               42, 53
               

               Conread position:
               287-520
               

               Cow position:
               chr5:28224675-28224448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               229, 79
               

               Conread position:
               287-521
               

               Cow position:
               chr5:26132863-26133103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               87, 15
               

               Conread position:
               287-521
               

               Cow position:
               chr5:56877703-56877476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               129, 81
               

               Conread position:
               287-522
               

               Cow position:
               chr5:25035021-25035260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               76, 172
               

               Conread position:
               287-524
               

               Cow position:
               chr5:5257054-5257294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               72, 228
               

               Conread position:
               287-527
               

               Cow position:
               chr5:42670640-42670880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               184, 63
               

               Conread position:
               287-527
               

               Cow position:
               chr5:46022825-46023074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               82, 48
               

               Conread position:
               287-529
               

               Cow position:
               chr5:35969773-35969521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 202
               

               Conread position:
               287-530
               

               Cow position:
               chr5:20128287-20128038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               287-531
               

               Cow position:
               chr5:53055325-53055576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               17, 231
               

               Conread position:
               287-531
               

               Cow position:
               chr5:60209912-60210159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               17, 224
               

               Conread position:
               287-531
               

               Cow position:
               chr5:64321994-64321740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               90, 246
               

               Conread position:
               287-533
               

               Cow position:
               chr5:9893892-9894140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 49
               

               Conread position:
               287-533
               

               Cow position:
               chr5:16025250-16025477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               287-533
               

               Cow position:
               chr5:18899188-18898960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               287-533
               

               Cow position:
               chr5:28035956-28035725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               228, 19
               

               Conread position:
               287-533
               

               Cow position:
               chr5:30805382-30805150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               107, 39
               

               Conread position:
               287-533
               

               Cow position:
               chr5:36855438-36855189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               32, 80
               

               Conread position:
               287-533
               

               Cow position:
               chr5:37255099-37255355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               13, 213
               

               Conread position:
               287-533
               

               Cow position:
               chr5:50872045-50871794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               75, 31
               

               Conread position:
               287-533
               

               Cow position:
               chr5:56071090-56070840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               184
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               92, 15
               

               Conread position:
               287-533
               

               Cow position:
               chr5:57934887-57935126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               210, 73
               

               Conread position:
               287-533
               

               Cow position:
               chr5:60016397-60016150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               92, 167
               

               Conread position:
               287-533
               

               Cow position:
               chr5:65967504-65967751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               93, 24
               

               Conread position:
               288-383
               

               Cow position:
               chr5:70353485-70353578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               96
               

               Alignm identity:
               83
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               288-422
               

               Cow position:
               chr5:63004479-63004349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               288-438
               

               Cow position:
               chr5:34639356-34639200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               122
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               288-443
               

               Cow position:
               chr5:64061245-64061092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               288-454
               

               Cow position:
               chr5:12478741-12478896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               288-455
               

               Cow position:
               chr5:59662825-59662997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               288-461
               

               Cow position:
               chr5:37253654-37253484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               141
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               288-463
               

               Cow position:
               chr5:41530704-41530887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               75, 120
               

               Conread position:
               288-468
               

               Cow position:
               chr5:40531300-40531490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               38, 180
               

               Conread position:
               288-474
               

               Cow position:
               chr5:1766066-1766257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               67, 11
               

               Conread position:
               288-484
               

               Cow position:
               chr5:38079606-38079399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               74, 38
               

               Conread position:
               288-491
               

               Cow position:
               chr5:21003531-21003339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               93, 33
               

               Conread position:
               288-496
               

               Cow position:
               chr5:41885146-41884940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               90, 119
               

               Conread position:
               288-497
               

               Cow position:
               chr5:71788925-71788712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               75, 32
               

               Conread position:
               288-499
               

               Cow position:
               chr5:23209192-23208974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               288-503
               

               Cow position:
               chr5:66257866-66257651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               87, 163
               

               Conread position:
               288-512
               

               Cow position:
               chr5:18295669-18295443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               90, 36
               

               Conread position:
               288-518
               

               Cow position:
               chr5:34914822-34915055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               288-520
               

               Cow position:
               chr5:35685165-35684934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               63, 33
               

               Conread position:
               288-521
               

               Cow position:
               chr5:64139794-64139555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               32, 13
               

               Conread position:
               288-524
               

               Cow position:
               chr5:40241965-40241739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               212, 11
               

               Conread position:
               288-525
               

               Cow position:
               chr5:39937348-39937106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               80, 23
               

               Conread position:
               288-525
               

               Cow position:
               chr5:46512537-46512779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               86, 11
               

               Conread position:
               288-526
               

               Cow position:
               chr5:65941018-65941260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 111
               

               Conread position:
               288-531
               

               Cow position:
               chr5:34562241-34561999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               181
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               186, 58
               

               Conread position:
               288-532
               

               Cow position:
               chr5:34914344-34914565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               288-533
               

               Cow position:
               chr5:21829095-21828849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               188
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               91, 11
               

               Conread position:
               288-533
               

               Cow position:
               chr5:26262453-26262692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               67, 73
               

               Conread position:
               288-533
               

               Cow position:
               chr5:36839179-36838941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               229, 62
               

               Conread position:
               288-533
               

               Cow position:
               chr5:57101294-57101542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 108
               

               Conread position:
               289-410
               

               Cow position:
               chr5:31481663-31481541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               100
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               89, 103
               

               Conread position:
               289-461
               

               Cow position:
               chr5:29895402-29895226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               289-470
               

               Cow position:
               chr5:54404630-54404808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               68, 48
               

               Conread position:
               289-479
               

               Cow position:
               chr5:7675928-7676118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               88, 10
               

               Conread position:
               289-500
               

               Cow position:
               chr5:45845460-45845675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               169
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               90, 10
               

               Conread position:
               289-515
               

               Cow position:
               chr5:7410178-7409953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               15, 125
               

               Conread position:
               289-520
               

               Cow position:
               chr5:35976725-35976509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               289-523
               

               Cow position:
               chr5:62172628-62172405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               180
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               289-525
               

               Cow position:
               chr5:3582785-3582549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               227, 10
               

               Conread position:
               289-525
               

               Cow position:
               chr5:22738327-22738095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               91, 10
               

               Conread position:
               289-528
               

               Cow position:
               chr5:69383482-69383243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 106
               

               Conread position:
               289-531
               

               Cow position:
               chr5:29681325-29681084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               102, 24
               

               Conread position:
               289-533
               

               Cow position:
               chr5:19752532-19752289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 165
               

               Conread position:
               289-533
               

               Cow position:
               chr5:45472505-45472263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               146, 27
               

               Conread position:
               289-533
               

               Cow position:
               chr5:67932235-67932483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               72, 206
               

               Conread position:
               290-397
               

               Cow position:
               chr5:45127031-45126926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               88
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               290-399
               

               Cow position:
               chr5:63940225-63940331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               95
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               88, 9
               

               Conread position:
               290-418
               

               Cow position:
               chr5:70146620-70146748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               99
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               74, 9
               

               Conread position:
               290-433
               

               Cow position:
               chr5:14419788-14419927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               290-446
               

               Cow position:
               chr5:12504564-12504720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               89, 67
               

               Conread position:
               290-460
               

               Cow position:
               chr5:63031478-63031317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               290-461
               

               Cow position:
               chr5:49207100-49207272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               89, 12
               

               Conread position:
               290-470
               

               Cow position:
               chr5:45854730-45854537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               88, 9
               

               Conread position:
               290-471
               

               Cow position:
               chr5:51800379-51800566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               84, 57
               

               Conread position:
               290-479
               

               Cow position:
               chr5:70189308-70189109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               290-483
               

               Cow position:
               chr5:16179293-16179478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               290-488
               

               Cow position:
               chr5:57744680-57744896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               70, 61
               

               Conread position:
               290-493
               

               Cow position:
               chr5:75760038-75760251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               105, 175
               

               Conread position:
               290-497
               

               Cow position:
               chr5:70271096-70270886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               77, 9
               

               Conread position:
               290-497
               

               Cow position:
               chr5:74039776-74039984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               87, 58
               

               Conread position:
               290-498
               

               Cow position:
               chr5:51298486-51298694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               163
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               92, 9
               

               Conread position:
               290-499
               

               Cow position:
               chr5:26147818-26147609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               170
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 17
               

               Conread position:
               290-516
               

               Cow position:
               chr5:64175901-64176126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               290-520
               

               Cow position:
               chr5:29828278-29828042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 124
               

               Conread position:
               290-520
               

               Cow position:
               chr5:55966643-55966884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               290-521
               

               Cow position:
               chr5:72045447-72045679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               178
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               92, 30
               

               Conread position:
               290-524
               

               Cow position:
               chr5:17086788-17087028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               52, 12
               

               Conread position:
               290-524
               

               Cow position:
               chr5:19278474-19278714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               78, 9
               

               Conread position:
               290-524
               

               Cow position:
               chr5:31052617-31052372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               76, 9
               

               Conread position:
               290-525
               

               Cow position:
               chr5:4267890-4267661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               290-525
               

               Cow position:
               chr5:7044477-7044714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               81, 9
               

               Conread position:
               290-529
               

               Cow position:
               chr5:44796506-44796745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 61
               

               Conread position:
               290-530
               

               Cow position:
               chr5:44993809-44994054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               17, 179
               

               Conread position:
               290-531
               

               Cow position:
               chr5:49341805-49342065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               290-532
               

               Cow position:
               chr5:20288028-20288279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               290-533
               

               Cow position:
               chr5:18574411-18574157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               75, 9
               

               Conread position:
               290-533
               

               Cow position:
               chr5:52164944-52165194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 9
               

               Conread position:
               291-378
               

               Cow position:
               chr5:36415857-36415770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               88
               

               Alignm identity:
               77
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               291-399
               

               Cow position:
               chr5:8149081-8149189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               94
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               87, 8
               

               Conread position:
               291-424
               

               Cow position:
               chr5:70545076-70545202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               291-434
               

               Cow position:
               chr5:29213375-29213243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               291-454
               

               Cow position:
               chr5:5030667-5030505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               81, 8
               

               Conread position:
               291-464
               

               Cow position:
               chr5:75116341-75116520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               69, 167
               

               Conread position:
               291-473
               

               Cow position:
               chr5:34787801-34787617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               291-474
               

               Cow position:
               chr5:35394211-35394391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               291-488
               

               Cow position:
               chr5:3677957-3677751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               73, 175
               

               Conread position:
               291-506
               

               Cow position:
               chr5:4120256-4120034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               45, 8
               

               Conread position:
               291-506
               

               Cow position:
               chr5:60212815-60212593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               100, 8
               

               Conread position:
               291-521
               

               Cow position:
               chr5:50713521-50713769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               291-521
               

               Cow position:
               chr5:73167785-73168016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               291-523
               

               Cow position:
               chr5:55783733-55783957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               291-529
               

               Cow position:
               chr5:53835949-53835700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               74, 8
               

               Conread position:
               291-531
               

               Cow position:
               chr5:30178274-30178520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               87, 8
               

               Conread position:
               291-533
               

               Cow position:
               chr5:11769500-11769253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               291-533
               

               Cow position:
               chr5:51065744-51065514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               84, 110
               

               Conread position:
               291-533
               

               Cow position:
               chr5:68537436-68537684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               83, 8
               

               Conread position:
               292-400
               

               Cow position:
               chr5:29860601-29860492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               90
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               292-430
               

               Cow position:
               chr5:74050051-74049910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               111
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               86, 7
               

               Conread position:
               292-459
               

               Cow position:
               chr5:12668764-12668927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               292-460
               

               Cow position:
               chr5:21721249-21721414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               87, 7
               

               Conread position:
               292-461
               

               Cow position:
               chr5:70572585-70572426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               153, 7
               

               Conread position:
               292-471
               

               Cow position:
               chr5:56327499-56327676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               143, 10
               

               Conread position:
               292-475
               

               Cow position:
               chr5:30221550-30221737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               86, 7
               

               Conread position:
               292-476
               

               Cow position:
               chr5:54127514-54127330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               80, 7
               

               Conread position:
               292-479
               

               Cow position:
               chr5:12562533-12562723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               143, 7
               

               Conread position:
               292-485
               

               Cow position:
               chr5:19079470-19079283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               292-492
               

               Cow position:
               chr5:52207772-52207567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               85, 12
               

               Conread position:
               292-494
               

               Cow position:
               chr5:35190333-35190132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               161
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               292-503
               

               Cow position:
               chr5:12300139-12299924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               16, 55
               

               Conread position:
               292-503
               

               Cow position:
               chr5:56524390-56524186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               209, 76
               

               Conread position:
               292-517
               

               Cow position:
               chr5:31216826-31217060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               86, 7
               

               Conread position:
               292-518
               

               Cow position:
               chr5:2468984-2469209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               168
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               7, 29
               

               Conread position:
               292-518
               

               Cow position:
               chr5:43604366-43604139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               79, 7
               

               Conread position:
               292-519
               

               Cow position:
               chr5:17828250-17828483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               78, 7
               

               Conread position:
               292-520
               

               Cow position:
               chr5:46540832-46541059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               164, 0
               

               Conread position:
               292-522
               

               Cow position:
               chr5:12902146-12901917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               180
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               86, 7
               

               Conread position:
               292-523
               

               Cow position:
               chr5:50942932-50943162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 86
               

               Conread position:
               292-525
               

               Cow position:
               chr5:29903315-29903532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               292-525
               

               Cow position:
               chr5:39815273-39815505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               77, 7
               

               Conread position:
               292-530
               

               Cow position:
               chr5:52108031-52108280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               191
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               70, 13
               

               Conread position:
               292-531
               

               Cow position:
               chr5:56059837-56060082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               45, 7
               

               Conread position:
               292-532
               

               Cow position:
               chr5:32394829-32394583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               62, 7
               

               Conread position:
               292-532
               

               Cow position:
               chr5:41165310-41165070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 82
               

               Conread position:
               292-533
               

               Cow position:
               chr5:5856087-5855843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 7
               

               Conread position:
               292-533
               

               Cow position:
               chr5:20994861-20995111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               79, 40
               

               Conread position:
               292-533
               

               Cow position:
               chr5:34625175-34624941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 7
               

               Conread position:
               292-533
               

               Cow position:
               chr5:50575995-50575768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               292-533
               

               Cow position:
               chr5:63627313-63627542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               93, 7
               

               Conread position:
               293-400
               

               Cow position:
               chr5:28324587-28324478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               91
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               293-410
               

               Cow position:
               chr5:74690026-74690148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               87, 6
               

               Conread position:
               293-424
               

               Cow position:
               chr5:61811442-61811309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               95, 6
               

               Conread position:
               293-451
               

               Cow position:
               chr5:25447113-25446950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               77, 6
               

               Conread position:
               293-451
               

               Cow position:
               chr5:55949452-55949614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               85, 6
               

               Conread position:
               293-462
               

               Cow position:
               chr5:63939831-63940007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               73, 155
               

               Conread position:
               293-466
               

               Cow position:
               chr5:742954-742780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               85, 11
               

               Conread position:
               293-469
               

               Cow position:
               chr5:30492565-30492746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               84, 6
               

               Conread position:
               293-469
               

               Cow position:
               chr5:41984567-41984406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               293-471
               

               Cow position:
               chr5:59335999-59335815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               78, 6
               

               Conread position:
               293-471
               

               Cow position:
               chr5:74887673-74887855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               88, 6
               

               Conread position:
               293-480
               

               Cow position:
               chr5:27084525-27084333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               85, 6
               

               Conread position:
               293-482
               

               Cow position:
               chr5:62996185-62995991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               77, 6
               

               Conread position:
               293-483
               

               Cow position:
               chr5:41009784-41009970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               293-484
               

               Cow position:
               chr5:26894485-26894687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               293-488
               

               Cow position:
               chr5:57399025-57399224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               75, 12
               

               Conread position:
               293-489
               

               Cow position:
               chr5:38647882-38647667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               75, 6
               

               Conread position:
               293-492
               

               Cow position:
               chr5:63172822-63173020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               124, 6
               

               Conread position:
               293-494
               

               Cow position:
               chr5:53145540-53145730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               293-503
               

               Cow position:
               chr5:17105071-17104865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               208, 6
               

               Conread position:
               293-512
               

               Cow position:
               chr5:60948359-60948137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 162
               

               Conread position:
               293-517
               

               Cow position:
               chr5:56613336-56613565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               293-520
               

               Cow position:
               chr5:43403135-43402901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               77, 6
               

               Conread position:
               293-521
               

               Cow position:
               chr5:31475910-31475677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               96, 14
               

               Conread position:
               293-521
               

               Cow position:
               chr5:56028319-56028544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               293-524
               

               Cow position:
               chr5:23529076-23529286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               293-524
               

               Cow position:
               chr5:30628926-30629167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               186
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               86, 114
               

               Conread position:
               293-527
               

               Cow position:
               chr5:43846151-43846385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               76, 48
               

               Conread position:
               293-528
               

               Cow position:
               chr5:20843172-20843407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               60, 6
               

               Conread position:
               293-531
               

               Cow position:
               chr5:45186889-45187133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               293-532
               

               Cow position:
               chr5:66582197-66581948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               87, 215
               

               Conread position:
               293-533
               

               Cow position:
               chr5:15471144-15470916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               220, 12
               

               Conread position:
               293-533
               

               Cow position:
               chr5:34347507-34347745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               84, 6
               

               Conread position:
               293-533
               

               Cow position:
               chr5:40237415-40237197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               218, 28
               

               Conread position:
               293-533
               

               Cow position:
               chr5:49685041-49685286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               34, 6
               

               Conread position:
               293-533
               

               Cow position:
               chr5:63192528-63192759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               226, 6
               

               Conread position:
               294-442
               

               Cow position:
               chr5:63079815-63079661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               294-454
               

               Cow position:
               chr5:57447439-57447604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               84, 5
               

               Conread position:
               294-457
               

               Cow position:
               chr5:70591767-70591613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               294-461
               

               Cow position:
               chr5:74065294-74065462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               83, 105
               

               Conread position:
               294-488
               

               Cow position:
               chr5:61580505-61580310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               74, 5
               

               Conread position:
               294-493
               

               Cow position:
               chr5:44810012-44810216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               77, 5
               

               Conread position:
               294-498
               

               Cow position:
               chr5:73253630-73253429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               81, 7
               

               Conread position:
               294-504
               

               Cow position:
               chr5:35145561-35145340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               73, 143
               

               Conread position:
               294-507
               

               Cow position:
               chr5:11229446-11229663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               70, 5
               

               Conread position:
               294-507
               

               Cow position:
               chr5:28302530-28302736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               182, 30
               

               Conread position:
               294-518
               

               Cow position:
               chr5:6438798-6439023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               7, 136
               

               Conread position:
               294-521
               

               Cow position:
               chr5:71768282-71768499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               294-523
               

               Cow position:
               chr5:56548792-56548565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               139, 93
               

               Conread position:
               294-524
               

               Cow position:
               chr5:69099944-69099712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               83, 5
               

               Conread position:
               294-527
               

               Cow position:
               chr5:7012624-7012858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               77, 11
               

               Conread position:
               294-529
               

               Cow position:
               chr5:30247300-30247533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               84, 5
               

               Conread position:
               294-531
               

               Cow position:
               chr5:30233135-30232891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               113, 10
               

               Conread position:
               294-533
               

               Cow position:
               chr5:35763469-35763258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               294-533
               

               Cow position:
               chr5:46672441-46672189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               10, 28
               

               Conread position:
               294-533
               

               Cow position:
               chr5:49474328-49474564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 85
               

               Conread position:
               295-485
               

               Cow position:
               chr5:21520225-21520407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               295-533
               

               Cow position:
               chr5:39875330-39875105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               220, 65
               

               Conread position:
               295-533
               

               Cow position:
               chr5:55756188-55756441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               83, 109
               

               Conread position:
               297-533
               

               Cow position:
               chr5:20779176-20779413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 176
               

               Conread position:
               298-419
               

               Cow position:
               chr5:54712846-54712973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               102
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               299-437
               

               Cow position:
               chr5:35320346-35320480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               78, 22
               

               Conread position:
               299-443
               

               Cow position:
               chr5:19626797-19626651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               299-454
               

               Cow position:
               chr5:718370-718212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               73, 102
               

               Conread position:
               299-464
               

               Cow position:
               chr5:63763886-63763716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               72, 152
               

               Conread position:
               299-471
               

               Cow position:
               chr5:5017592-5017421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               63, 25
               

               Conread position:
               299-479
               

               Cow position:
               chr5:71445613-71445427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               299-488
               

               Cow position:
               chr5:44734506-44734697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               156
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               299-494
               

               Cow position:
               chr5:60523948-60523757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               158
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               299-503
               

               Cow position:
               chr5:32338740-32338953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               51, 12
               

               Conread position:
               299-511
               

               Cow position:
               chr5:44722292-44722508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               76, 136
               
UCSC Genome Browser
               Conread position:
               299-515
               

               Cow position:
               chr5:48919019-48918811 (view  custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               78, 0
               
UCSC Genome Browser
               
               
               
Conread position: 299-516

               
               
               
Cow position: chr5:53935333-53935547 (view  custom track)

               
               
               
Alignm length: 219

               
               
               
Alignm identity: 155

               
               
               
Alignm E-value: 9e-30

               
               
               
Alignm gaps (pig, cow): 85, 70
UCSC Genome Browser
               
               
               
Conread position: 299-519

               
               
               
Cow position: chr5:30276908-30276687 (view  custom track)

               
               
               
Alignm length: 222

               
               
               
Alignm identity: 171

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 29, 0

               
               
               Conread position:299-519
               
               
               Cow position:chr5:70749965-70750188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 128

               
               
               Conread position:299-521
               
               
               Cow position:chr5:18062089-18062324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:299-521
               
               
               Cow position:chr5:56467891-56467688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:299-523
               
               
               Cow position:chr5:40109705-40109486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:299-525
               
               
               Cow position:chr5:69338035-69337811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):80, 45

               
               
               Conread position:299-529
               
               
               Cow position:chr5:12760899-12761131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):79, 96

               
               
               Conread position:299-531
               
               
               Cow position:chr5:11539831-11540062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:299-531
               
               
               Cow position:chr5:35228923-35229153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 24

               
               
               Conread position:299-532
               
               
               Cow position:chr5:65776156-65776399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 48

               
               
               Conread position:299-533
               
               
               Cow position:chr5:14314737-14314508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):202, 66

               
               
               Conread position:299-533
               
               
               Cow position:chr5:16893557-16893789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):226, 75

               
               
               Conread position:299-533
               
               
               Cow position:chr5:30253961-30253724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 59

               
               
               Conread position:299-533
               
               
               Cow position:chr5:39447304-39447554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:300-471
               
               
               Cow position:chr5:7139621-7139788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:300-485
               
               
               Cow position:chr5:4347473-4347673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:300-533
               
               
               Cow position:chr5:12434755-12434523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):209, 63

               
               
               Conread position:300-533
               
               
               Cow position:chr5:32975338-32975569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 140

               
               
               Conread position:300-533
               
               
               Cow position:chr5:61784505-61784744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:300-533
               
               
               Cow position:chr5:63234602-63234842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 183

               
               
               Conread position:300-533
               
               
               Cow position:chr5:66466533-66466301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:301-523
               
               
               Cow position:chr5:50600265-50600041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):78, 203

               
               
               Conread position:301-533
               
               
               Cow position:chr5:66551673-66551916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:302-453
               
               
               Cow position:chr5:26790113-26790261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:302-465
               
               
               Cow position:chr5:52029622-52029458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 134

               
               
               Conread position:302-497
               
               
               Cow position:chr5:47743839-47743647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:302-520
               
               
               Cow position:chr5:47696242-47696445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:302-526
               
               
               Cow position:chr5:55232605-55232822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):100, 24

               
               
               Conread position:302-533
               
               
               Cow position:chr5:57156082-57156331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 114

               
               
               Conread position:303-473
               
               
               Cow position:chr5:69682130-69682306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:303-532
               
               
               Cow position:chr5:34050325-34050100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):198, 74

               
               
               Conread position:303-533
               
               
               Cow position:chr5:53947116-53946880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:304-495
               
               
               Cow position:chr5:51233808-51233998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:304-533
               
               
               Cow position:chr5:61007280-61007049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:305-462
               
               
               Cow position:chr5:4981660-4981504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:305-476
               
               
               Cow position:chr5:6707266-6707434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 55

               
               
               Conread position:305-476
               
               
               Cow position:chr5:42753111-42752943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):149, 60

               
               
               Conread position:305-484
               
               
               Cow position:chr5:62572746-62572564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:305-485
               
               
               Cow position:chr5:19561231-19561419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:305-488
               
               
               Cow position:chr5:16668908-16668725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:154
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:305-498
               
               
               Cow position:chr5:66659729-66659527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:305-518
               
               
               Cow position:chr5:17062864-17063087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 211

               
               
               Conread position:305-520
               
               
               Cow position:chr5:17554820-17555036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):70, 105

               
               
               Conread position:306-460
               
               
               Cow position:chr5:56754146-56753989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:306-468
               
               
               Cow position:chr5:65745554-65745717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:306-469
               
               
               Cow position:chr5:22386853-22387012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:306-480
               
               
               Cow position:chr5:50087982-50087806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:306-486
               
               
               Cow position:chr5:53980538-53980724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:306-488
               
               
               Cow position:chr5:54753035-54753224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:306-520
               
               
               Cow position:chr5:22643033-22643230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:306-527
               
               
               Cow position:chr5:38717509-38717299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:306-533
               
               
               Cow position:chr5:45397779-45397555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:306-533
               
               
               Cow position:chr5:49501604-49501841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:307-468
               
               
               Cow position:chr5:23855464-23855621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:307-485
               
               
               Cow position:chr5:53795234-53795056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):128, 67

               
               
               Conread position:307-504
               
               
               Cow position:chr5:12351599-12351795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:308-484
               
               
               Cow position:chr5:30035281-30035099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:308-485
               
               
               Cow position:chr5:20812761-20812577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 110

               
               
               Conread position:308-504
               
               
               Cow position:chr5:72006285-72006479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):188, 16

               
               
               Conread position:308-524
               
               
               Cow position:chr5:26097502-26097286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 184

               
               
               Conread position:308-531
               
               
               Cow position:chr5:60741457-60741229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 205

               
               
               Conread position:308-532
               
               
               Cow position:chr5:37646287-37646057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):137, 50

               
               
               Conread position:309-533
               
               
               Cow position:chr5:16939381-16939608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):69, 195

               
               
               Conread position:310-533
               
               
               Cow position:chr5:24349300-24349091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:311-498
               
               
               Cow position:chr5:38169101-38168912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:311-499
               
               
               Cow position:chr5:44196721-44196912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:312-495
               
               
               Cow position:chr5:38040360-38040543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:312-529
               
               
               Cow position:chr5:29352924-29353136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:170
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:313-499
               
               
               Cow position:chr5:15721881-15722057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:313-524
               
               
               Cow position:chr5:45419934-45420146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:313-530
               
               
               Cow position:chr5:44053839-44054064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:313-533
               
               
               Cow position:chr5:41713495-41713280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):113, 44

               
               
               Conread position:313-533
               
               
               Cow position:chr5:64523657-64523879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 207

               
               
               Conread position:314-485
               
               
               Cow position:chr5:51125812-51125978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:314-506
               
               
               Cow position:chr5:46704094-46704290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:314-531
               
               
               Cow position:chr5:57419590-57419808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 205

               
               
               Conread position:316-520
               
               
               Cow position:chr5:66366713-66366506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 60

               
               
               Conread position:318-520
               
               
               Cow position:chr5:57686539-57686741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:319-521
               
               
               Cow position:chr5:12247540-12247742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:319-533
               
               
               Cow position:chr5:37646351-37646562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:321-486
               
               
               Cow position:chr5:41983923-41983754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):61, 148

               
               
               Conread position:321-533
               
               
               Cow position:chr5:54350172-54350379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):200, 43

               
               
               Conread position:321-533
               
               
               Cow position:chr5:55795771-55795982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 201

               
               
               Conread position:323-481
               
               
               Cow position:chr5:60126893-60126723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:324-482
               
               
               Cow position:chr5:20667581-20667740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:324-488
               
               
               Cow position:chr5:20882417-20882596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:324-525
               
               
               Cow position:chr5:4709958-4710160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:324-533
               
               
               Cow position:chr5:69461531-69461313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:326-527
               
               
               Cow position:chr5:69731683-69731494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 36

               
               
               Conread position:326-533
               
               
               Cow position:chr5:56334326-56334525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:328-461
               
               
               Cow position:chr5:52192241-52192374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:328-503
               
               
               Cow position:chr5:44726146-44726322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:328-533
               
               
               Cow position:chr5:6286257-6286448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:330-483
               
               
               Cow position:chr5:26990570-26990423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:330-507
               
               
               Cow position:chr5:65050029-65050202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):156, 36

               
               
               Conread position:331-473
               
               
               Cow position:chr5:9352699-9352553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:331-490
               
               
               Cow position:chr5:695052-694890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:331-515
               
               
               Cow position:chr5:72564938-72564765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:332-473
               
               
               Cow position:chr5:36722308-36722450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 119

               
               
               Conread position:332-532
               
               
               Cow position:chr5:76366116-76366311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:332-533
               
               
               Cow position:chr5:71495010-71494803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:333-507
               
               
               Cow position:chr5:17604949-17605125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:333-533
               
               
               Cow position:chr5:17602018-17602218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):48, 134

               
               
               Conread position:334-520
               
               
               Cow position:chr5:7193599-7193415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:336-533
               
               
               Cow position:chr5:60183984-60183784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:337-519
               
               
               Cow position:chr5:6683194-6683366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:338-481
               
               
               Cow position:chr5:29979782-29979925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):132, 21

               
               
               Conread position:341-520
               
               
               Cow position:chr5:51935364-51935186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:341-528
               
               
               Cow position:chr5:13537309-13537125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:344-533
               
               
               Cow position:chr5:34528721-34528537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:349-532
               
               
               Cow position:chr5:53710522-53710707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:350-484
               
               
               Cow position:chr5:30236040-30235912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:350-533
               
               
               Cow position:chr5:50821949-50821765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 52

               
               
               Conread position:351-524
               
               
               Cow position:chr5:67118587-67118412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:353-499
               
               
               Cow position:chr5:5847685-5847828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:353-525
               
               
               Cow position:chr5:31434444-31434277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):147, 30

               
               
               Conread position:354-491
               
               
               Cow position:chr5:51490439-51490577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:354-498
               
               
               Cow position:chr5:62378940-62378801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:354-533
               
               
               Cow position:chr5:56287344-56287519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):147, 18

               
               
               Conread position:355-509
               
               
               Cow position:chr5:56361953-56361803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:355-519
               
               
               Cow position:chr5:56518057-56518224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 151

               
               
               Conread position:356-522
               
               
               Cow position:chr5:9369110-9369276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):5, 156

               
               
               Conread position:359-524
               
               
               Cow position:chr5:21039826-21039986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:359-533
               
               
               Cow position:chr5:62142834-62142658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:359-533
               
               
               Cow position:chr5:64758612-64758787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):168, 23

               
               
               Conread position:360-488
               
               
               Cow position:chr5:45037407-45037278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:360-496
               
               
               Cow position:chr5:42623024-42623158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:360-497
               
               
               Cow position:chr5:54436909-54436775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:360-507
               
               
               Cow position:chr5:24136870-24136724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:360-518
               
               
               Cow position:chr5:40242200-40242044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:360-519
               
               
               Cow position:chr5:33155969-33155812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):152, 18

               
               
               Conread position:360-519
               
               
               Cow position:chr5:43929580-43929738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:360-519
               
               
               Cow position:chr5:55129499-55129340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:360-522
               
               
               Cow position:chr5:46509708-46509871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:360-522
               
               
               Cow position:chr5:51490091-51490250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):24, 119

               
               
               Conread position:360-524
               
               
               Cow position:chr5:24946398-24946232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 30

               
               
               Conread position:360-524
               
               
               Cow position:chr5:56338865-56339029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:360-529
               
               
               Cow position:chr5:41294238-41294069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):6, 119

               
               
               Conread position:360-533
               
               
               Cow position:chr5:458642-458475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:360-533
               
               
               Cow position:chr5:9089872-9090038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:360-533
               
               
               Cow position:chr5:23168670-23168846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:360-533
               
               
               Cow position:chr5:44752151-44752333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:360-533
               
               
               Cow position:chr5:54060434-54060260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:360-533
               
               
               Cow position:chr5:55019449-55019276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 158

               
               
               Conread position:360-533
               
               
               Cow position:chr5:56212062-56211884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:360-533
               
               
               Cow position:chr5:58446964-58446790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:360-533
               
               
               Cow position:chr5:58856258-58856088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:360-533
               
               
               Cow position:chr5:61875693-61875526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:361-507
               
               
               Cow position:chr5:44874349-44874202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:361-517
               
               
               Cow position:chr5:54086693-54086540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:361-518
               
               
               Cow position:chr5:9170429-9170583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:361-520
               
               
               Cow position:chr5:9233833-9233993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:361-524
               
               
               Cow position:chr5:67212513-67212353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:361-526
               
               
               Cow position:chr5:24069542-24069380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 28

               
               
               Conread position:361-533
               
               
               Cow position:chr5:16205998-16206172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:361-533
               
               
               Cow position:chr5:30949760-30949933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:361-533
               
               
               Cow position:chr5:57230182-57230356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:361-533
               
               
               Cow position:chr5:58555294-58555118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:362-533
               
               
               Cow position:chr5:23678549-23678718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):159, 51

               
               
               Conread position:362-533
               
               
               Cow position:chr5:54311490-54311319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:362-533
               
               
               Cow position:chr5:60715214-60715379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:363-496
               
               
               Cow position:chr5:55850035-55849905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:363-503
               
               
               Cow position:chr5:12738405-12738542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 99

               
               
               Conread position:363-518
               
               
               Cow position:chr5:56428163-56428313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:363-519
               
               
               Cow position:chr5:64591940-64592098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:363-523
               
               
               Cow position:chr5:54767756-54767914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:363-524
               
               
               Cow position:chr5:57150820-57150657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:363-525
               
               
               Cow position:chr5:4221132-4220971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):16, 121

               
               
               Conread position:363-525
               
               
               Cow position:chr5:35982584-35982747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:363-533
               
               
               Cow position:chr5:4031833-4032008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:363-533
               
               
               Cow position:chr5:34301071-34300900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 99

               
               
               Conread position:363-533
               
               
               Cow position:chr5:43992477-43992306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:363-533
               
               
               Cow position:chr5:63987292-63987465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:364-533
               
               
               Cow position:chr5:6045448-6045275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:364-533
               
               
               Cow position:chr5:56317441-56317281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:364-533
               
               
               Cow position:chr5:63150018-63150185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:365-503
               
               
               Cow position:chr5:35647494-35647355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:365-509
               
               
               Cow position:chr5:26723599-26723455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):8, 61

               
               
               Conread position:365-525
               
               
               Cow position:chr5:37808512-37808672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:365-529
               
               
               Cow position:chr5:63426852-63427019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 37

               
               
               Conread position:365-532
               
               
               Cow position:chr5:45273351-45273517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:365-533
               
               
               Cow position:chr5:27306454-27306287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):153, 17

               
               
               Conread position:365-533
               
               
               Cow position:chr5:41545742-41545912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 95

               
               
               Conread position:365-533
               
               
               Cow position:chr5:57575924-57575752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:366-496
               
               
               Cow position:chr5:54375352-54375482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:366-519
               
               
               Cow position:chr5:31640575-31640422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:366-524
               
               
               Cow position:chr5:39258656-39258500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):10, 83

               
               
               Conread position:366-533
               
               
               Cow position:chr5:67244068-67243902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:367-476
               
               
               Cow position:chr5:1946979-1946871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:367-526
               
               
               Cow position:chr5:49440721-49440881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:368-512
               
               
               Cow position:chr5:1396747-1396604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:369-521
               
               
               Cow position:chr5:69636371-69636219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:369-533
               
               
               Cow position:chr5:46322656-46322815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:370-531
               
               
               Cow position:chr5:56517249-56517090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 8

               
               
               Conread position:371-500
               
               
               Cow position:chr5:65932798-65932927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:372-532
               
               
               Cow position:chr5:52000362-52000207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:372-533
               
               
               Cow position:chr5:43844519-43844682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:373-520
               
               
               Cow position:chr5:14629663-14629814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 5

               
               
               Conread position:378-518
               
               
               Cow position:chr5:7723803-7723663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):119, 137

               
               
               Conread position:378-518
               
               
               Cow position:chr5:45126790-45126649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:378-530
               
               
               Cow position:chr5:29771666-29771515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:383-531
               
               
               Cow position:chr5:60189126-60188976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 142

               
               
               Conread position:383-533
               
               
               Cow position:chr5:1461222-1461072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):144, 128

               
               
               Conread position:386-525
               
               
               Cow position:chr5:57737229-57737090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:386-533
               
               
               Cow position:chr5:19813090-19813238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:386-533
               
               
               Cow position:chr5:45574235-45574381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:394-529
               
               
               Cow position:chr5:67540079-67540213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:394-533
               
               
               Cow position:chr5:65588821-65588685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):121, 83

               
               
               Conread position:395-529
               
               
               Cow position:chr5:58793486-58793622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:397-533
               
               
               Cow position:chr5:32696704-32696839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:397-533
               
               
               Cow position:chr5:62415842-62415980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:398-526
               
               
               Cow position:chr5:52644962-52645092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):122, 0
Show alignments to all cow chromosomes.
Conread position:	183-524
Cow position:	chr5:59384355-59384696 (view UCSC Genome Browser custom track)
Alignm length:	353
Alignm identity:	238
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	70, 9
Conread position:	188-523
Cow position:	chr5:30303216-30302889 (view UCSC Genome Browser custom track)
Alignm length:	339
Alignm identity:	240
Alignm E-value:	0
Alignm gaps (pig, cow):	37, 193
Conread position:	214-477
Cow position:	chr5:21338959-21339230 (view UCSC Genome Browser custom track)
Alignm length:	277
Alignm identity:	190
Alignm E-value:	3e-28
Alignm gaps (pig, cow):	159, 38
Conread position:	227-532
Cow position:	chr5:14550287-14550597 (view UCSC Genome Browser custom track)
Alignm length:	315
Alignm identity:	218
Alignm E-value:	8e-39
Alignm gaps (pig, cow):	59, 22
Conread position:	230-400
Cow position:	chr5:17253943-17254108 (view UCSC Genome Browser custom track)
Alignm length:	171
Alignm identity:	124
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	34, 0
Conread position:	230-533
Cow position:	chr5:16214970-16214668 (view UCSC Genome Browser custom track)
Alignm length:	307
Alignm identity:	210
Alignm E-value:	2e-38
Alignm gaps (pig, cow):	11, 23
Conread position:	234-521
Cow position:	chr5:55965614-55965899 (view UCSC Genome Browser custom track)
Alignm length:	294
Alignm identity:	204
Alignm E-value:	5e-34
Alignm gaps (pig, cow):	136, 16
Conread position:	235-489
Cow position:	chr5:49821722-49821455 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	203
Alignm E-value:	0
Alignm gaps (pig, cow):	27, 0
Conread position:	238-524
Cow position:	chr5:59627375-59627092 (view UCSC Genome Browser custom track)
Alignm length:	290
Alignm identity:	200
Alignm E-value:	6e-36
Alignm gaps (pig, cow):	8, 62
Conread position:	239-533
Cow position:	chr5:59395941-59395642 (view UCSC Genome Browser custom track)
Alignm length:	307
Alignm identity:	201
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	145, 5
Conread position:	240-433
Cow position:	chr5:28660508-28660313 (view UCSC Genome Browser custom track)
Alignm length:	199
Alignm identity:	147
Alignm E-value:	3e-30
Alignm gaps (pig, cow):	138, 30
Conread position:	241-508
Cow position:	chr5:5016702-5016437 (view UCSC Genome Browser custom track)
Alignm length:	270
Alignm identity:	198
Alignm E-value:	0
Alignm gaps (pig, cow):	68, 222
Conread position:	241-533
Cow position:	chr5:56153880-56153598 (view UCSC Genome Browser custom track)
Alignm length:	298
Alignm identity:	207
Alignm E-value:	4e-33
Alignm gaps (pig, cow):	38, 8
Conread position:	243-484
Cow position:	chr5:40122329-40122578 (view UCSC Genome Browser custom track)
Alignm length:	250
Alignm identity:	177
Alignm E-value:	5e-34
Alignm gaps (pig, cow):	19, 0
Conread position:	244-461
Cow position:	chr5:29599279-29599491 (view UCSC Genome Browser custom track)
Alignm length:	218
Alignm identity:	167
Alignm E-value:	3.00004e-41
Alignm gaps (pig, cow):	19, 0
Conread position:	244-488
Cow position:	chr5:47220768-47220516 (view UCSC Genome Browser custom track)
Alignm length:	254
Alignm identity:	174
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	38, 61
Conread position:	247-376
Cow position:	chr5:54375091-54374960 (view UCSC Genome Browser custom track)
Alignm length:	132
Alignm identity:	102
Alignm E-value:	4e-23
Alignm gaps (pig, cow):	36, 0
Conread position:	248-453
Cow position:	chr5:26149312-26149097 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	161
Alignm E-value:	3e-31
Alignm gaps (pig, cow):	13, 114
Conread position:	248-529
Cow position:	chr5:63832185-63831914 (view UCSC Genome Browser custom track)
Alignm length:	284
Alignm identity:	192
Alignm E-value:	8e-28
Alignm gaps (pig, cow):	52, 28
Conread position:	250-483
Cow position:	chr5:42704029-42703804 (view UCSC Genome Browser custom track)
Alignm length:	235
Alignm identity:	161
Alignm E-value:	6e-25
Alignm gaps (pig, cow):	223, 78