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Cow genome map

           
Conread name:
           
Pig2-108O01
        

               
Conread position:
               
214-476
               

               
Cow position:
               
chr6:45979858-45980133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
241-469
               

               
Cow position:
               
chr6:68272893-68272663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
121, 35
               

               
Conread position:
               
245-533
               

               
Cow position:
               
chr6:62370898-62371177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
247-492
               

               
Cow position:
               
chr6:40833733-40833973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
47, 60
               

               
Conread position:
               
247-519
               

               
Cow position:
               
chr6:21470145-21470418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
25, 54
               

               
Conread position:
               
247-533
               

               
Cow position:
               
chr6:5330703-5330408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
248-476
               

               
Cow position:
               
chr6:62987424-62987642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
249-376
               

               
Cow position:
               
chr6:12711508-12711635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
10, 40
               

               
Conread position:
               
249-461
               

               
Cow position:
               
chr6:14383958-14383744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
126, 9
               

               
Conread position:
               
249-524
               

               
Cow position:
               
chr6:29775900-29775628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
249-530
               

               
Cow position:
               
chr6:57571761-57571479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
249-532
               

               
Cow position:
               
chr6:62929786-62929492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
251-518
               

               
Cow position:
               
chr6:3952796-3952530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
127, 7
               

               
Conread position:
               
251-531
               

               
Cow position:
               
chr6:48282279-48281990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
251-531
               

               
Cow position:
               
chr6:53145400-53145682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
127, 46
               

               
Conread position:
               
252-488
               

               
Cow position:
               
chr6:21350750-21350991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
112, 181
               

               
Conread position:
               
252-531
               

               
Cow position:
               
chr6:8562997-8562720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
42, 71
               

               
Conread position:
               
253-461
               

               
Cow position:
               
chr6:34423182-34423390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
126, 44
               

               
Conread position:
               
253-518
               

               
Cow position:
               
chr6:21004960-21004686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
253-520
               

               
Cow position:
               
chr6:37693029-37692761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
128, 73
               

               
Conread position:
               
253-522
               

               
Cow position:
               
chr6:59104880-59104605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 23
               

               
Conread position:
               
253-531
               

               
Cow position:
               
chr6:62683657-62683367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
253-533
               

               
Cow position:
               
chr6:2624040-2623780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
253-533
               

               
Cow position:
               
chr6:21293220-21293500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
253-533
               

               
Cow position:
               
chr6:25614811-25615098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
122, 34
               

               
Conread position:
               
254-498
               

               
Cow position:
               
chr6:48010246-48010491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
254-509
               

               
Cow position:
               
chr6:10176016-10176281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
255-411
               

               
Cow position:
               
chr6:51842030-51842187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
255-488
               

               
Cow position:
               
chr6:24491306-24491070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
258-530
               

               
Cow position:
               
chr6:1475614-1475345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:19293071-19292797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 21
               

               
Conread position:
               
261-522
               

               
Cow position:
               
chr6:7539847-7539582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
33, 172
               

               
Conread position:
               
262-533
               

               
Cow position:
               
chr6:64432205-64431933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 96
               

               
Conread position:
               
263-390
               

               
Cow position:
               
chr6:31695513-31695385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
263-476
               

               
Cow position:
               
chr6:7628238-7628021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
263-516
               

               
Cow position:
               
chr6:23353826-23353565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
96, 221
               

               
Conread position:
               
263-530
               

               
Cow position:
               
chr6:9219529-9219272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
181, 13
               

               
Conread position:
               
263-531
               

               
Cow position:
               
chr6:60784143-60783868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
263-533
               

               
Cow position:
               
chr6:47884775-47885024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
264-467
               

               
Cow position:
               
chr6:410950-411153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
5, 36
               

               
Conread position:
               
264-497
               

               
Cow position:
               
chr6:12761549-12761312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
115, 68
               

               
Conread position:
               
266-438
               

               
Cow position:
               
chr6:66302343-66302514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
266-525
               

               
Cow position:
               
chr6:30024144-30023890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
266-526
               

               
Cow position:
               
chr6:55405182-55404909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
266-529
               

               
Cow position:
               
chr6:38771536-38771287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
266-533
               

               
Cow position:
               
chr6:63066103-63065822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
98, 39
               

               
Conread position:
               
267-523
               

               
Cow position:
               
chr6:50810407-50810665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
267-531
               

               
Cow position:
               
chr6:55475503-55475253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
255, 93
               

               
Conread position:
               
268-456
               

               
Cow position:
               
chr6:7291576-7291389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
268-519
               

               
Cow position:
               
chr6:62670140-62669876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
268-533
               

               
Cow position:
               
chr6:60273745-60274015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
269-451
               

               
Cow position:
               
chr6:29851633-29851447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
270-378
               

               
Cow position:
               
chr6:7130599-7130706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
270-399
               

               
Cow position:
               
chr6:38615389-38615257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
99, 9
               

               
Conread position:
               
270-517
               

               
Cow position:
               
chr6:50090906-50090655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
271-460
               

               
Cow position:
               
chr6:31928901-31928705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
271-470
               

               
Cow position:
               
chr6:6996635-6996839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 159
               

               
Conread position:
               
271-471
               

               
Cow position:
               
chr6:21052182-21052391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
271-518
               

               
Cow position:
               
chr6:27888605-27888363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
271-529
               

               
Cow position:
               
chr6:67187940-67187683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
272-386
               

               
Cow position:
               
chr6:35993872-35993755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
272-474
               

               
Cow position:
               
chr6:58697370-58697576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
272-475
               

               
Cow position:
               
chr6:6850590-6850376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
272-490
               

               
Cow position:
               
chr6:53346229-53346014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
272-522
               

               
Cow position:
               
chr6:26043995-26043750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
126, 9
               

               
Conread position:
               
272-533
               

               
Cow position:
               
chr6:32287892-32287635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
129, 106
               

               
Conread position:
               
272-533
               

               
Cow position:
               
chr6:38640494-38640228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
273-455
               

               
Cow position:
               
chr6:28559802-28559612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
273-477
               

               
Cow position:
               
chr6:44543886-44544096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
273-485
               

               
Cow position:
               
chr6:15974267-15974475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
87, 13
               

               
Conread position:
               
273-533
               

               
Cow position:
               
chr6:24536266-24536538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 245
               

               
Conread position:
               
273-533
               

               
Cow position:
               
chr6:47575149-47574903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
274-419
               

               
Cow position:
               
chr6:67810730-67810874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
274-461
               

               
Cow position:
               
chr6:50577773-50577589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
107, 25
               

               
Conread position:
               
274-474
               

               
Cow position:
               
chr6:47151077-47150875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
274-477
               

               
Cow position:
               
chr6:44541064-44540860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
274-497
               

               
Cow position:
               
chr6:62707464-62707694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 7
               

               
Conread position:
               
274-518
               

               
Cow position:
               
chr6:16380806-16380556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
274-519
               

               
Cow position:
               
chr6:53932583-53932838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
14, 184
               

               
Conread position:
               
274-532
               

               
Cow position:
               
chr6:35728108-35727840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
274-533
               

               
Cow position:
               
chr6:1704051-1703802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
111, 7
               

               
Conread position:
               
274-533
               

               
Cow position:
               
chr6:45596286-45596537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
23, 89
               

               
Conread position:
               
274-533
               

               
Cow position:
               
chr6:68685800-68685551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
275-396
               

               
Cow position:
               
chr6:35097232-35097351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
275-490
               

               
Cow position:
               
chr6:41657523-41657307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
275-494
               

               
Cow position:
               
chr6:34076423-34076199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 125
               

               
Conread position:
               
276-397
               

               
Cow position:
               
chr6:19681975-19681853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
276-399
               

               
Cow position:
               
chr6:28620359-28620235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 111
               

               
Conread position:
               
276-430
               

               
Cow position:
               
chr6:62849177-62849025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 22
               

               
Conread position:
               
276-441
               

               
Cow position:
               
chr6:54828064-54828234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
102, 23
               

               
Conread position:
               
276-452
               

               
Cow position:
               
chr6:54840243-54840430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
276-454
               

               
Cow position:
               
chr6:53732241-53732057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
97, 29
               

               
Conread position:
               
276-458
               

               
Cow position:
               
chr6:44123579-44123401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
276-467
               

               
Cow position:
               
chr6:18152646-18152454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
276-469
               

               
Cow position:
               
chr6:23024842-23025040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
102, 23
               

               
Conread position:
               
276-476
               

               
Cow position:
               
chr6:18776503-18776304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
102, 48
               

               
Conread position:
               
276-482
               

               
Cow position:
               
chr6:24776395-24776186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
102, 43
               

               
Conread position:
               
276-494
               

               
Cow position:
               
chr6:6063038-6063258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
276-498
               

               
Cow position:
               
chr6:33510042-33509821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
102, 25
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chr6:42728904-42728670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
276-506
               

               
Cow position:
               
chr6:16091152-16090927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
276-524
               

               
Cow position:
               
chr6:8688594-8688842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
118, 29
               

               
Conread position:
               
276-525
               

               
Cow position:
               
chr6:93940-94191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 235
               

               
Conread position:
               
276-527
               

               
Cow position:
               
chr6:65264294-65264540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr6:55548275-55548533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
18, 73
               

               
Conread position:
               
276-530
               

               
Cow position:
               
chr6:3596049-3595789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
102, 9
               

               
Conread position:
               
276-530
               

               
Cow position:
               
chr6:40050330-40050071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
276-532
               

               
Cow position:
               
chr6:52478154-52478413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
276-533
               

               
Cow position:
               
chr6:32122152-32121903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
249, 120
               

               
Conread position:
               
276-533
               

               
Cow position:
               
chr6:47959063-47958810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
277-470
               

               
Cow position:
               
chr6:26408248-26408445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
99, 20
               

               
Conread position:
               
277-472
               

               
Cow position:
               
chr6:19936313-19936512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
277-499
               

               
Cow position:
               
chr6:67643435-67643660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 10
               

               
Conread position:
               
277-524
               

               
Cow position:
               
chr6:26155402-26155154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
277-529
               

               
Cow position:
               
chr6:12669353-12669102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
96, 22
               

               
Conread position:
               
277-531
               

               
Cow position:
               
chr6:693892-694151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
105, 19
               

               
Conread position:
               
277-532
               

               
Cow position:
               
chr6:13687558-13687817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
277-532
               

               
Cow position:
               
chr6:61631355-61631609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
101, 9
               

               
Conread position:
               
277-533
               

               
Cow position:
               
chr6:48469261-48468997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
103, 22
               

               
Conread position:
               
277-533
               

               
Cow position:
               
chr6:55417276-55417529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
25, 98
               

               
Conread position:
               
278-471
               

               
Cow position:
               
chr6:1173691-1173898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
278-520
               

               
Cow position:
               
chr6:63251662-63251913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 142
               

               
Conread position:
               
280-476
               

               
Cow position:
               
chr6:44566678-44566478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
127, 19
               

               
Conread position:
               
280-493
               

               
Cow position:
               
chr6:59015327-59015537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
280-529
               

               
Cow position:
               
chr6:67451121-67451371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
99, 17
               

               
Conread position:
               
280-530
               

               
Cow position:
               
chr6:51581002-51581254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
97, 125
               

               
Conread position:
               
280-533
               

               
Cow position:
               
chr6:60143947-60144202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 21
               

               
Conread position:
               
281-378
               

               
Cow position:
               
chr6:59257442-59257345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-378
               

               
Cow position:
               
chr6:61544130-61544229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
281-389
               

               
Cow position:
               
chr6:34515161-34515054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
281-433
               

               
Cow position:
               
chr6:43770651-43770802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
281-457
               

               
Cow position:
               
chr6:35341936-35342107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
281-462
               

               
Cow position:
               
chr6:31846992-31847173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-469
               

               
Cow position:
               
chr6:18440225-18440417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
281-471
               

               
Cow position:
               
chr6:28561917-28562110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
281-471
               

               
Cow position:
               
chr6:30983767-30983578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
16, 70
               

               
Conread position:
               
281-472
               

               
Cow position:
               
chr6:36570718-36570517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
281-472
               

               
Cow position:
               
chr6:63020593-63020400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
103, 18
               

               
Conread position:
               
281-475
               

               
Cow position:
               
chr6:48449067-48448879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
281-476
               

               
Cow position:
               
chr6:15172808-15172619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
167, 70
               

               
Conread position:
               
281-476
               

               
Cow position:
               
chr6:62805896-62805696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
281-481
               

               
Cow position:
               
chr6:63168511-63168715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
110, 183
               

               
Conread position:
               
281-488
               

               
Cow position:
               
chr6:45920969-45921172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
281-488
               

               
Cow position:
               
chr6:53711656-53711444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
281-490
               

               
Cow position:
               
chr6:45535571-45535767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
281-490
               

               
Cow position:
               
chr6:55044388-55044602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
281-494
               

               
Cow position:
               
chr6:43906428-43906648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 196
               

               
Conread position:
               
281-497
               

               
Cow position:
               
chr6:21183970-21184190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
20, 146
               

               
Conread position:
               
281-503
               

               
Cow position:
               
chr6:13040704-13040467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
281-503
               

               
Cow position:
               
chr6:61269571-61269338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
17, 123
               

               
Conread position:
               
281-509
               

               
Cow position:
               
chr6:19045880-19045643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
281-515
               

               
Cow position:
               
chr6:9008374-9008597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
281-519
               

               
Cow position:
               
chr6:24110537-24110293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
19, 189
               

               
Conread position:
               
281-521
               

               
Cow position:
               
chr6:14949240-14949472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 24
               

               
Conread position:
               
281-521
               

               
Cow position:
               
chr6:34251047-34251287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
281-522
               

               
Cow position:
               
chr6:43134690-43134931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
71, 24
               

               
Conread position:
               
281-524
               

               
Cow position:
               
chr6:35181001-35181249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
19, 228
               

               
Conread position:
               
281-524
               

               
Cow position:
               
chr6:58370999-58370764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
281-527
               

               
Cow position:
               
chr6:16287814-16288055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
5, 51
               

               
Conread position:
               
281-527
               

               
Cow position:
               
chr6:22850001-22850253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
281-529
               

               
Cow position:
               
chr6:4469019-4468769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
19, 229
               

               
Conread position:
               
281-530
               

               
Cow position:
               
chr6:67451413-67451647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
241, 18
               

               
Conread position:
               
281-531
               

               
Cow position:
               
chr6:6201686-6201426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 142
               

               
Conread position:
               
281-531
               

               
Cow position:
               
chr6:48097353-48097603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
95, 16
               

               
Conread position:
               
281-531
               

               
Cow position:
               
chr6:54365079-54365331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
109, 17
               

               
Conread position:
               
281-532
               

               
Cow position:
               
chr6:17313989-17313732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
96, 18
               

               
Conread position:
               
281-532
               

               
Cow position:
               
chr6:27851456-27851710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
281-532
               

               
Cow position:
               
chr6:28083779-28084018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
239, 79
               

               
Conread position:
               
281-532
               

               
Cow position:
               
chr6:36203073-36202819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
97, 181
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr6:17414199-17414452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr6:35436239-35435990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
239, 83
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr6:42035020-42034768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
96, 6
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr6:44623841-44623605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr6:46558306-46558051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
245, 0
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr6:47246034-47245779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr6:47540589-47540852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr6:53546281-53546032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr6:60468482-60468235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
124, 18
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr6:62056862-62056609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
240, 18
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr6:66590324-66590079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 118
               

               
Conread position:
               
282-378
               

               
Cow position:
               
chr6:16762377-16762474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
282-383
               

               
Cow position:
               
chr6:67044470-67044571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 77
               

               
Conread position:
               
282-438
               

               
Cow position:
               
chr6:16016287-16016125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
282-451
               

               
Cow position:
               
chr6:21175585-21175416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
282-479
               

               
Cow position:
               
chr6:16411865-16411662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
18, 197
               

               
Conread position:
               
282-492
               

               
Cow position:
               
chr6:41226597-41226792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
282-519
               

               
Cow position:
               
chr6:35171864-35171616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
282-521
               

               
Cow position:
               
chr6:61169013-61168764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
282-527
               

               
Cow position:
               
chr6:26728294-26728529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
242, 17
               

               
Conread position:
               
282-529
               

               
Cow position:
               
chr6:53460319-53460568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 94
               

               
Conread position:
               
282-531
               

               
Cow position:
               
chr6:3351279-3351026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
282-531
               

               
Cow position:
               
chr6:23696244-23695999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
97, 17
               

               
Conread position:
               
283-467
               

               
Cow position:
               
chr6:5600612-5600798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
16, 75
               

               
Conread position:
               
283-532
               

               
Cow position:
               
chr6:39358093-39358348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
283-533
               

               
Cow position:
               
chr6:18903786-18904055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
17, 219
               

               
Conread position:
               
284-376
               

               
Cow position:
               
chr6:58210858-58210950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-397
               

               
Cow position:
               
chr6:23235434-23235319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
284-527
               

               
Cow position:
               
chr6:4383722-4383483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
285-377
               

               
Cow position:
               
chr6:2617946-2618037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
285-388
               

               
Cow position:
               
chr6:26929194-26929298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
285-433
               

               
Cow position:
               
chr6:23381417-23381572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
285-471
               

               
Cow position:
               
chr6:49686069-49685877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
8, 178
               

               
Conread position:
               
285-480
               

               
Cow position:
               
chr6:53811833-53811632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
285-487
               

               
Cow position:
               
chr6:47173789-47173985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
285-496
               

               
Cow position:
               
chr6:3937034-3936818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
285-497
               

               
Cow position:
               
chr6:22876679-22876898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
285-508
               

               
Cow position:
               
chr6:66259986-66259751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
285-514
               

               
Cow position:
               
chr6:66947571-66947802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 192
               

               
Conread position:
               
285-519
               

               
Cow position:
               
chr6:120484-120258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
285-523
               

               
Cow position:
               
chr6:14913986-14914227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
93, 56
               

               
Conread position:
               
285-524
               

               
Cow position:
               
chr6:17816741-17816990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 234
               

               
Conread position:
               
285-525
               

               
Cow position:
               
chr6:12928387-12928149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
90, 14
               

               
Conread position:
               
285-532
               

               
Cow position:
               
chr6:32453636-32453383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
285-532
               

               
Cow position:
               
chr6:66570672-66570438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
285-533
               

               
Cow position:
               
chr6:1103496-1103739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
285-533
               

               
Cow position:
               
chr6:11247017-11246761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
17, 118
               

               
Conread position:
               
285-533
               

               
Cow position:
               
chr6:21736647-21736890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
285-533
               

               
Cow position:
               
chr6:40032428-40032187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
15, 53
               

               
Conread position:
               
285-533
               

               
Cow position:
               
chr6:42567744-42567488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
285-533
               

               
Cow position:
               
chr6:44078762-44078515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
94, 14
               

               
Conread position:
               
286-422
               

               
Cow position:
               
chr6:54141068-54140934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
286-432
               

               
Cow position:
               
chr6:66058462-66058610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
286-444
               

               
Cow position:
               
chr6:12099444-12099601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
286-445
               

               
Cow position:
               
chr6:59101071-59101237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
286-509
               

               
Cow position:
               
chr6:53939191-53938985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
286-524
               

               
Cow position:
               
chr6:29485330-29485088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
286-526
               

               
Cow position:
               
chr6:17412319-17412554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
286-532
               

               
Cow position:
               
chr6:13565333-13565083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
286-532
               

               
Cow position:
               
chr6:37827700-37827955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
92, 123
               

               
Conread position:
               
286-533
               

               
Cow position:
               
chr6:143131-143374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 93
               

               
Conread position:
               
286-533
               

               
Cow position:
               
chr6:5095293-5095549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
286-533
               

               
Cow position:
               
chr6:28148510-28148250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
286-533
               

               
Cow position:
               
chr6:31564105-31564341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
233, 55
               

               
Conread position:
               
286-533
               

               
Cow position:
               
chr6:57404889-57405126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
286-533
               

               
Cow position:
               
chr6:59602969-59603213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 15
               

               
Conread position:
               
287-377
               

               
Cow position:
               
chr6:37603910-37603820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
287-425
               

               
Cow position:
               
chr6:59759415-59759275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
287-454
               

               
Cow position:
               
chr6:34463345-34463512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
287-455
               

               
Cow position:
               
chr6:8326044-8325871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
287-460
               

               
Cow position:
               
chr6:55061116-55060931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
287-461
               

               
Cow position:
               
chr6:43540017-43540181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
287-462
               

               
Cow position:
               
chr6:4323567-4323397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
287-470
               

               
Cow position:
               
chr6:60347379-60347568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
91, 119
               

               
Conread position:
               
287-471
               

               
Cow position:
               
chr6:14263644-14263832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
287-475
               

               
Cow position:
               
chr6:59297290-59297107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
93, 12
               

               
Conread position:
               
287-479
               

               
Cow position:
               
chr6:45159810-45160007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
287-481
               

               
Cow position:
               
chr6:35743226-35743027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
83, 37
               

               
Conread position:
               
287-484
               

               
Cow position:
               
chr6:62724805-62724601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
287-495
               

               
Cow position:
               
chr6:30825531-30825731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
287-496
               

               
Cow position:
               
chr6:46282746-46282970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
287-497
               

               
Cow position:
               
chr6:5601946-5601735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 145
               

               
Conread position:
               
287-507
               

               
Cow position:
               
chr6:15587347-15587572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
287-509
               

               
Cow position:
               
chr6:18447268-18447496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
13, 173
               

               
Conread position:
               
287-515
               

               
Cow position:
               
chr6:67574635-67574402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
83, 12
               

               
Conread position:
               
287-520
               

               
Cow position:
               
chr6:22985616-22985845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
107, 96
               

               
Conread position:
               
287-520
               

               
Cow position:
               
chr6:36196448-36196225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
90, 37
               

               
Conread position:
               
287-520
               

               
Cow position:
               
chr6:54127575-54127803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
287-524
               

               
Cow position:
               
chr6:15305817-15305576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
89, 170
               

               
Conread position:
               
287-526
               

               
Cow position:
               
chr6:55282047-55282290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
74, 12
               

               
Conread position:
               
287-526
               

               
Cow position:
               
chr6:62079165-62078927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
14, 38
               

               
Conread position:
               
287-529
               

               
Cow position:
               
chr6:67728623-67728375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
287-530
               

               
Cow position:
               
chr6:2078571-2078815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
287-530
               

               
Cow position:
               
chr6:21399509-21399758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
287-531
               

               
Cow position:
               
chr6:56716054-56715817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
155, 67
               

               
Conread position:
               
287-532
               

               
Cow position:
               
chr6:43345193-43345446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
287-532
               

               
Cow position:
               
chr6:54831723-54831478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 12
               

               
Conread position:
               
287-533
               

               
Cow position:
               
chr6:7119384-7119622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
287-533
               

               
Cow position:
               
chr6:7189884-7190121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
287-533
               

               
Cow position:
               
chr6:12338236-12337987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
77, 127
               

               
Conread position:
               
287-533
               

               
Cow position:
               
chr6:15300595-15300828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
287-533
               

               
Cow position:
               
chr6:15937605-15937854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
13, 229
               

               
Conread position:
               
287-533
               

               
Cow position:
               
chr6:23401749-23401992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 162
               

               
Conread position:
               
287-533
               

               
Cow position:
               
chr6:35318888-35319137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
287-533
               

               
Cow position:
               
chr6:47305591-47305336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
22, 148
               

               
Conread position:
               
288-435
               

               
Cow position:
               
chr6:30688267-30688417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
288-440
               

               
Cow position:
               
chr6:63233761-63233605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
114, 11
               

               
Conread position:
               
288-451
               

               
Cow position:
               
chr6:16627973-16627813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
288-474
               

               
Cow position:
               
chr6:32006211-32006399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
288-474
               

               
Cow position:
               
chr6:40262029-40262214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
130, 30
               

               
Conread position:
               
288-491
               

               
Cow position:
               
chr6:24514290-24514507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
288-491
               

               
Cow position:
               
chr6:49607654-49607431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
288-500
               

               
Cow position:
               
chr6:53024566-53024774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
288-504
               

               
Cow position:
               
chr6:36643242-36643467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
85, 44
               

               
Conread position:
               
288-523
               

               
Cow position:
               
chr6:19446498-19446260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
71, 124
               

               
Conread position:
               
288-524
               

               
Cow position:
               
chr6:6965150-6965390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
89, 36
               

               
Conread position:
               
288-524
               

               
Cow position:
               
chr6:60057393-60057651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
288-529
               

               
Cow position:
               
chr6:10399663-10399902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
108, 91
               

               
Conread position:
               
288-530
               

               
Cow position:
               
chr6:47783113-47782859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 231
               

               
Conread position:
               
288-531
               

               
Cow position:
               
chr6:13653590-13653349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
288-531
               

               
Cow position:
               
chr6:16765153-16765397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
97, 211
               

               
Conread position:
               
288-532
               

               
Cow position:
               
chr6:10613074-10612853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
288-532
               

               
Cow position:
               
chr6:13367527-13367282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
106, 110
               

               
Conread position:
               
288-533
               

               
Cow position:
               
chr6:611788-611547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 101
               

               
Conread position:
               
288-533
               

               
Cow position:
               
chr6:37463250-37463016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
234, 71
               

               
Conread position:
               
288-533
               

               
Cow position:
               
chr6:45064791-45065018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
288-533
               

               
Cow position:
               
chr6:48803395-48803638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
59, 140
               

               
Conread position:
               
288-533
               

               
Cow position:
               
chr6:54490502-54490737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
225, 11
               

               
Conread position:
               
289-383
               

               
Cow position:
               
chr6:59994270-59994176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
289-469
               

               
Cow position:
               
chr6:55646706-55646891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 10
               

               
Conread position:
               
289-470
               

               
Cow position:
               
chr6:29210720-29210555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
289-481
               

               
Cow position:
               
chr6:39433244-39433055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
90, 57
               

               
Conread position:
               
289-490
               

               
Cow position:
               
chr6:66979114-66978909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
289-493
               

               
Cow position:
               
chr6:50883436-50883641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
87, 10
               

               
Conread position:
               
289-495
               

               
Cow position:
               
chr6:24468156-24468361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
117, 10
               

               
Conread position:
               
289-497
               

               
Cow position:
               
chr6:34569659-34569440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
289-499
               

               
Cow position:
               
chr6:23938294-23938091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
289-500
               

               
Cow position:
               
chr6:66057998-66057802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
289-518
               

               
Cow position:
               
chr6:26450543-26450326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
289-521
               

               
Cow position:
               
chr6:21535283-21535046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 12
               

               
Conread position:
               
289-528
               

               
Cow position:
               
chr6:17997073-17997320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
72, 186
               

               
Conread position:
               
289-529
               

               
Cow position:
               
chr6:41655811-41656042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
233, 74
               

               
Conread position:
               
289-531
               

               
Cow position:
               
chr6:8966332-8966099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
289-533
               

               
Cow position:
               
chr6:8094043-8094293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
289-533
               

               
Cow position:
               
chr6:31535329-31535574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
233, 89
               

               
Conread position:
               
289-533
               

               
Cow position:
               
chr6:36470334-36470568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
219, 43
               

               
Conread position:
               
289-533
               

               
Cow position:
               
chr6:49421552-49421792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 42
               

               
Conread position:
               
289-533
               

               
Cow position:
               
chr6:59438218-59438451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
182, 15
               

               
Conread position:
               
290-396
               

               
Cow position:
               
chr6:31713719-31713612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 9
               

               
Conread position:
               
290-413
               

               
Cow position:
               
chr6:60674074-60673951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
290-438
               

               
Cow position:
               
chr6:50444872-50445026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
290-457
               

               
Cow position:
               
chr6:4756047-4755887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
119, 65
               

               
Conread position:
               
290-460
               

               
Cow position:
               
chr6:5820017-5820177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
290-461
               

               
Cow position:
               
chr6:37994447-37994277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
155, 72
               

               
Conread position:
               
290-471
               

               
Cow position:
               
chr6:12631736-12631560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
290-474
               

               
Cow position:
               
chr6:50682057-50682244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
290-475
               

               
Cow position:
               
chr6:36939117-36938921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
290-476
               

               
Cow position:
               
chr6:57467841-57467650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
89, 9
               

               
Conread position:
               
290-480
               

               
Cow position:
               
chr6:6547271-6547459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
186, 58
               

               
Conread position:
               
290-503
               

               
Cow position:
               
chr6:2547504-2547281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
290-517
               

               
Cow position:
               
chr6:43787665-43787896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
100, 226
               

               
Conread position:
               
290-521
               

               
Cow position:
               
chr6:32268643-32268875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
10, 121
               

               
Conread position:
               
290-523
               

               
Cow position:
               
chr6:32126294-32126062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 9
               

               
Conread position:
               
290-524
               

               
Cow position:
               
chr6:6060332-6060565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
290-524
               

               
Cow position:
               
chr6:21467023-21467257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
290-527
               

               
Cow position:
               
chr6:42483657-42483420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
290-528
               

               
Cow position:
               
chr6:60265926-60266179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
290-530
               

               
Cow position:
               
chr6:66434196-66433951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
290-533
               

               
Cow position:
               
chr6:19264258-19264499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
90, 31
               

               
Conread position:
               
290-533
               

               
Cow position:
               
chr6:35989995-35990237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
290-533
               

               
Cow position:
               
chr6:37149425-37149186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
290-533
               

               
Cow position:
               
chr6:56850260-56850010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
291-400
               

               
Cow position:
               
chr6:23173290-23173181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
291-400
               

               
Cow position:
               
chr6:35103045-35103154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
86, 8
               

               
Conread position:
               
291-458
               

               
Cow position:
               
chr6:48278653-48278817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
291-467
               

               
Cow position:
               
chr6:43607001-43607191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
79, 8
               

               
Conread position:
               
291-471
               

               
Cow position:
               
chr6:54294508-54294337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
291-487
               

               
Cow position:
               
chr6:25772978-25773173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 8
               

               
Conread position:
               
291-495
               

               
Cow position:
               
chr6:18117807-18118014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
21, 173
               

               
Conread position:
               
291-497
               

               
Cow position:
               
chr6:51933781-51933587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
291-499
               

               
Cow position:
               
chr6:40879032-40878808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 48
               

               
Conread position:
               
291-503
               

               
Cow position:
               
chr6:1866972-1866758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
291-503
               

               
Cow position:
               
chr6:60850941-60850726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
291-518
               

               
Cow position:
               
chr6:51529949-51530178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
291-519
               

               
Cow position:
               
chr6:28155932-28156149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
223, 8
               

               
Conread position:
               
291-519
               

               
Cow position:
               
chr6:66839434-66839209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
79, 8
               

               
Conread position:
               
291-524
               

               
Cow position:
               
chr6:47356067-47355829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
58, 8
               

               
Conread position:
               
291-524
               

               
Cow position:
               
chr6:68046925-68047141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
158, 13
               

               
Conread position:
               
291-527
               

               
Cow position:
               
chr6:16700495-16700263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
219, 8
               

               
Conread position:
               
291-529
               

               
Cow position:
               
chr6:38441421-38441178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
70, 8
               

               
Conread position:
               
291-531
               

               
Cow position:
               
chr6:21061649-21061881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
70, 84
               

               
Conread position:
               
291-532
               

               
Cow position:
               
chr6:65871273-65871034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
229, 83
               

               
Conread position:
               
291-533
               

               
Cow position:
               
chr6:15243081-15242830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
291-533
               

               
Cow position:
               
chr6:16102949-16103198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
13, 174
               

               
Conread position:
               
291-533
               

               
Cow position:
               
chr6:21475966-21475721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
88, 8
               

               
Conread position:
               
291-533
               

               
Cow position:
               
chr6:47520296-47520047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
80, 115
               

               
Conread position:
               
291-533
               

               
Cow position:
               
chr6:57545988-57546226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 8
               

               
Conread position:
               
292-441
               

               
Cow position:
               
chr6:57935336-57935484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
292-445
               

               
Cow position:
               
chr6:47672912-47673062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 7
               

               
Conread position:
               
292-467
               

               
Cow position:
               
chr6:16137527-16137707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
72, 7
               

               
Conread position:
               
292-471
               

               
Cow position:
               
chr6:33302636-33302453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 7
               

               
Conread position:
               
292-485
               

               
Cow position:
               
chr6:36225350-36225153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
85, 7
               

               
Conread position:
               
292-488
               

               
Cow position:
               
chr6:20076037-20075835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
85, 7
               

               
Conread position:
               
292-498
               

               
Cow position:
               
chr6:8369664-8369456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
292-505
               

               
Cow position:
               
chr6:28972793-28973012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
101, 12
               

               
Conread position:
               
292-518
               

               
Cow position:
               
chr6:19225152-19225362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
292-524
               

               
Cow position:
               
chr6:6229926-6229707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
292-524
               

               
Cow position:
               
chr6:58304652-58304420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
292-524
               

               
Cow position:
               
chr6:63426902-63426672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
292-528
               

               
Cow position:
               
chr6:50467378-50467135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
292-531
               

               
Cow position:
               
chr6:19259117-19259344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
292-531
               

               
Cow position:
               
chr6:55296852-55297095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
292-532
               

               
Cow position:
               
chr6:12965094-12964849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
78, 7
               

               
Conread position:
               
292-533
               

               
Cow position:
               
chr6:15243502-15243251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 20
               

               
Conread position:
               
292-533
               

               
Cow position:
               
chr6:15446952-15447205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
292-533
               

               
Cow position:
               
chr6:17557615-17557379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
292-533
               

               
Cow position:
               
chr6:35726330-35726094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
104, 7
               

               
Conread position:
               
292-533
               

               
Cow position:
               
chr6:41014734-41014980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
292-533
               

               
Cow position:
               
chr6:50984458-50984222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
292-533
               

               
Cow position:
               
chr6:60819756-60819513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
293-410
               

               
Cow position:
               
chr6:48661136-48661253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
38, 6
               

               
Conread position:
               
293-438
               

               
Cow position:
               
chr6:47989666-47989517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
293-469
               

               
Cow position:
               
chr6:55919692-55919874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
85, 113
               

               
Conread position:
               
293-471
               

               
Cow position:
               
chr6:17404802-17404619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 6
               

               
Conread position:
               
293-474
               

               
Cow position:
               
chr6:60186412-60186607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
21, 6
               

               
Conread position:
               
293-480
               

               
Cow position:
               
chr6:35984895-35985087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
80, 12
               

               
Conread position:
               
293-485
               

               
Cow position:
               
chr6:13742226-13742033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 6
               

               
Conread position:
               
293-485
               

               
Cow position:
               
chr6:19563239-19563439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
85, 113
               

               
Conread position:
               
293-491
               

               
Cow position:
               
chr6:15058613-15058415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
293-498
               

               
Cow position:
               
chr6:18954853-18955043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
85, 6
               

               
Conread position:
               
293-507
               

               
Cow position:
               
chr6:17068416-17068625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
293-508
               

               
Cow position:
               
chr6:18080277-18080493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 6
               

               
Conread position:
               
293-521
               

               
Cow position:
               
chr6:1941595-1941823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 6
               

               
Conread position:
               
293-522
               

               
Cow position:
               
chr6:46859932-46860158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
84, 8
               

               
Conread position:
               
293-522
               

               
Cow position:
               
chr6:53841264-53841498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
70, 6
               

               
Conread position:
               
293-525
               

               
Cow position:
               
chr6:37395162-37395396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
293-526
               

               
Cow position:
               
chr6:9736406-9736653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
54, 6
               

               
Conread position:
               
293-526
               

               
Cow position:
               
chr6:50504695-50504459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 6
               

               
Conread position:
               
293-529
               

               
Cow position:
               
chr6:54846035-54846278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 223
               

               
Conread position:
               
293-529
               

               
Cow position:
               
chr6:57320359-57320585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 6
               

               
Conread position:
               
293-531
               

               
Cow position:
               
chr6:20157575-20157330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
293-533
               

               
Cow position:
               
chr6:1429874-1429639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
293-533
               

               
Cow position:
               
chr6:62437656-62437411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
85, 6
               

               
Conread position:
               
294-433
               

               
Cow position:
               
chr6:21346914-21347054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
294-458
               

               
Cow position:
               
chr6:54406567-54406727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
85, 5
               

               
Conread position:
               
294-471
               

               
Cow position:
               
chr6:57300008-57299817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
69, 5
               

               
Conread position:
               
294-479
               

               
Cow position:
               
chr6:26054661-26054854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
294-479
               

               
Cow position:
               
chr6:54821072-54820882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
82, 5
               

               
Conread position:
               
294-484
               

               
Cow position:
               
chr6:8186949-8187144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
84, 5
               

               
Conread position:
               
294-492
               

               
Cow position:
               
chr6:36537125-36537323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
89, 5
               

               
Conread position:
               
294-498
               

               
Cow position:
               
chr6:34475320-34475529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 5
               

               
Conread position:
               
294-498
               

               
Cow position:
               
chr6:39415063-39414851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
73, 17
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr6:50771123-50771337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
85, 5
               

               
Conread position:
               
294-519
               

               
Cow position:
               
chr6:56986409-56986637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
74, 174
               

               
Conread position:
               
294-519
               

               
Cow position:
               
chr6:57079664-57079434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
68, 10
               

               
Conread position:
               
294-524
               

               
Cow position:
               
chr6:58725605-58725376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
84, 5
               

               
Conread position:
               
294-526
               

               
Cow position:
               
chr6:32866982-32867217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
84, 54
               

               
Conread position:
               
294-528
               

               
Cow position:
               
chr6:10039966-10039724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
294-531
               

               
Cow position:
               
chr6:38610212-38609968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
81, 5
               

               
Conread position:
               
294-532
               

               
Cow position:
               
chr6:18608572-18608818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
79, 5
               

               
Conread position:
               
294-533
               

               
Cow position:
               
chr6:5609204-5609449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
71, 5
               

               
Conread position:
               
294-533
               

               
Cow position:
               
chr6:7128165-7128409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
77, 107
               

               
Conread position:
               
294-533
               

               
Cow position:
               
chr6:36645612-36645380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
225, 5
               

               
Conread position:
               
295-517
               

               
Cow position:
               
chr6:63047814-63047605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
296-533
               

               
Cow position:
               
chr6:39093982-39093745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
188, 72
               

               
Conread position:
               
297-420
               

               
Cow position:
               
chr6:36846382-36846506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 105
               

               
Conread position:
               
297-520
               

               
Cow position:
               
chr6:49398393-49398609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
298-529
               

               
Cow position:
               
chr6:21231747-21231526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
299-439
               

               
Cow position:
               
chr6:11262975-11262837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
299-454
               

               
Cow position:
               
chr6:38033092-38032933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
299-455
               

               
Cow position:
               
chr6:5445902-5445742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 149
               

               
Conread position:
               
299-458
               

               
Cow position:
               
chr6:59265479-59265629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
299-473
               

               
Cow position:
               
chr6:4699939-4699764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
299-479
               

               
Cow position:
               
chr6:34721877-34722054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 114
               

               
Conread position:
               
299-490
               

               
Cow position:
               
chr6:58173576-58173384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
162, 77
               

               
Conread position:
               
299-492
               

               
Cow position:
               
chr6:21083307-21083503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
299-509
               

               
Cow position:
               
chr6:33150060-33150271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
299-509
               

               
Cow position:
               
chr6:61883939-61884146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
117, 85
               

               
Conread position:
               
299-515
               

               
Cow position:
               
chr6:12623743-12623530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
66, 76
               

               
Conread position:
               
299-516
               

               
Cow position:
               
chr6:44194322-44194535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
299-518
               

               
Cow position:
               
chr6:65903392-65903612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
56, 116
               

               
Conread position:
               
299-519
               

               
Cow position:
               
chr6:46466052-46465832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
299-521
               

               
Cow position:
               
chr6:19402079-19401853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
92, 99
               

               
Conread position:
               
299-522
               

               
Cow position:
               
chr6:34195928-34196143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
122, 62
               

               
Conread position:
               
299-523
               

               
Cow position:
               
chr6:6264886-6264659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
299-523
               

               
Cow position:
               
chr6:24031597-24031386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
299-523
               

               
Cow position:
               
chr6:24781317-24781548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
70, 129
               

               
Conread position:
               
299-524
               

               
Cow position:
               
chr6:8499361-8499153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
299-524
               

               
Cow position:
               
chr6:9302489-9302711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
85, 77
               

               
Conread position:
               
299-524
               

               
Cow position:
               
chr6:67069581-67069809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
299-526
               

               
Cow position:
               
chr6:61110016-61109789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
222, 77
               

               
Conread position:
               
299-527
               

               
Cow position:
               
chr6:10225416-10225644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
73, 167
               

               
Conread position:
               
299-529
               

               
Cow position:
               
chr6:29240166-29239942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
299-532
               

               
Cow position:
               
chr6:10105749-10105983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
299-532
               

               
Cow position:
               
chr6:19996849-19996614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
299-532
               

               
Cow position:
               
chr6:23532880-23532653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
220, 38
               

               
Conread position:
               
299-533
               

               
Cow position:
               
chr6:2899350-2899575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
174, 61
               

               
Conread position:
               
299-533
               

               
Cow position:
               
chr6:38207251-38207493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 32
               

               
Conread position:
               
299-533
               

               
Cow position:
               
chr6:57089438-57089194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
79, 208
               

               
Conread position:
               
299-533
               

               
Cow position:
               
chr6:66131553-66131305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
64, 181
               

               
Conread position:
               
300-399
               

               
Cow position:
               
chr6:49097692-49097594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
300-456
               

               
Cow position:
               
chr6:8726910-8726751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
300-524
               

               
Cow position:
               
chr6:17794522-17794757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
41, 225
               

               
Conread position:
               
300-524
               

               
Cow position:
               
chr6:45690386-45690603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
301-498
               

               
Cow position:
               
chr6:38853424-38853627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
301-499
               

               
Cow position:
               
chr6:42118924-42118733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
301-533
               

               
Cow position:
               
chr6:60118374-60118147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
302-460
               

               
Cow position:
               
chr6:63182516-63182358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
83, 74
               

               
Conread position:
               
303-517
               

               
Cow position:
               
chr6:9832427-9832219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
303-529
               

               
Cow position:
               
chr6:44867316-44867538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
67, 41
               

               
Conread position:
               
303-533
               

               
Cow position:
               
chr6:48379381-48379619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
304-470
               

               
Cow position:
               
chr6:23942445-23942601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
153, 52
               

               
Conread position:
               
304-485
               

               
Cow position:
               
chr6:46206520-46206342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
304-515
               

               
Cow position:
               
chr6:22525554-22525345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
108, 17
               

               
Conread position:
               
304-525
               

               
Cow position:
               
chr6:24004749-24004542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
304-533
               

               
Cow position:
               
chr6:60740239-60740014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
305-522
               

               
Cow position:
               
chr6:41375998-41375780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 153
               

               
Conread position:
               
305-533
               

               
Cow position:
               
chr6:27219394-27219176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
72, 148
               

               
Conread position:
               
305-533
               

               
Cow position:
               
chr6:46292127-46292349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
107, 59
               

               
Conread position:
               
306-453
               

               
Cow position:
               
chr6:2758009-2757861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
306-454
               

               
Cow position:
               
chr6:23594162-23594020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
306-470
               

               
Cow position:
               
chr6:34380589-34380755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
306-471
               

               
Cow position:
               
chr6:61644629-61644800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
306-476
               

               
Cow position:
               
chr6:42136884-42137063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
306-476
               

               
Cow position:
               
chr6:48793007-48792831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
71, 100
               

               
Conread position:
               
306-484
               

               
Cow position:
               
chr6:47022786-47022606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
306-488
               

               
Cow position:
               
chr6:14471592-14471405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 172
               

               
Conread position:
               
306-503
               

               
Cow position:
               
chr6:54133038-54132842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
74, 44
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr6:10189989-10189779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
306-533
               

               
Cow position:
               
chr6:41733862-41733623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
306-533
               

               
Cow position:
               
chr6:60517065-60516823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
62, 158
               

               
Conread position:
               
307-431
               

               
Cow position:
               
chr6:68602468-68602342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
307-454
               

               
Cow position:
               
chr6:40682442-40682590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr6:24339515-24339307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
307-518
               

               
Cow position:
               
chr6:5113821-5114037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
87, 136
               

               
Conread position:
               
307-530
               

               
Cow position:
               
chr6:68816396-68816167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
59, 12
               

               
Conread position:
               
307-533
               

               
Cow position:
               
chr6:2585167-2584939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
72, 94
               

               
Conread position:
               
308-433
               

               
Cow position:
               
chr6:78909-79034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
308-471
               

               
Cow position:
               
chr6:24905847-24905686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
308-513
               

               
Cow position:
               
chr6:37466302-37466107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
133, 66
               

               
Conread position:
               
308-516
               

               
Cow position:
               
chr6:65534943-65535157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
308-530
               

               
Cow position:
               
chr6:12091761-12091993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
308-531
               

               
Cow position:
               
chr6:61681303-61681074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
310-518
               

               
Cow position:
               
chr6:1870974-1871186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
310-524
               

               
Cow position:
               
chr6:31078644-31078870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 94
               

               
Conread position:
               
310-533
               

               
Cow position:
               
chr6:57287448-57287664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
311-503
               

               
Cow position:
               
chr6:34119141-34119326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
311-524
               

               
Cow position:
               
chr6:63720414-63720206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
311-533
               

               
Cow position:
               
chr6:61523982-61524209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
312-514
               

               
Cow position:
               
chr6:28483238-28483031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
313-519
               

               
Cow position:
               
chr6:33450757-33450959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
64, 79
               

               
Conread position:
               
313-531
               

               
Cow position:
               
chr6:9718697-9718913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
313-533
               

               
Cow position:
               
chr6:4691745-4691981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
58, 113
               

               
Conread position:
               
313-533
               

               
Cow position:
               
chr6:19696029-19695808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
65, 156
               

               
Conread position:
               
313-533
               

               
Cow position:
               
chr6:46173038-46173264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
53, 89
               

               
Conread position:
               
314-531
               

               
Cow position:
               
chr6:35842879-35842658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
57, 91
               

               
Conread position:
               
315-488
               

               
Cow position:
               
chr6:30895773-30895951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
60, 6
               

               
Conread position:
               
316-443
               

               
Cow position:
               
chr6:53235436-53235566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
316-531
               

               
Cow position:
               
chr6:445545-445321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
319-492
               

               
Cow position:
               
chr6:36920761-36920936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
64, 83
               

               
Conread position:
               
319-533
               

               
Cow position:
               
chr6:8125543-8125322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
319-533
               

               
Cow position:
               
chr6:38641708-38641492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 132
               

               
Conread position:
               
323-447
               

               
Cow position:
               
chr6:48520848-48520973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
323-484
               

               
Cow position:
               
chr6:21311326-21311480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
324-485
               

               
Cow position:
               
chr6:107218-107380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
324-509
               

               
Cow position:
               
chr6:40774125-40774311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
324-533
               

               
Cow position:
               
chr6:26915537-26915328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
54, 130
               

               
Conread position:
               
324-533
               

               
Cow position:
               
chr6:58459926-58459718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
326-533
               

               
Cow position:
               
chr6:7801188-7801396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 151
               

               
Conread position:
               
327-520
               

               
Cow position:
               
chr6:69153618-69153423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
34, 151
               

               
Conread position:
               
327-521
               

               
Cow position:
               
chr6:10488074-10488261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
329-533
               

               
Cow position:
               
chr6:21590907-21590703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
330-529
               

               
Cow position:
               
chr6:36189903-36189699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
48, 140
               

               
Conread position:
               
330-531
               

               
Cow position:
               
chr6:21514403-21514611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
331-458
               

               
Cow position:
               
chr6:38645939-38645812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
331-467
               

               
Cow position:
               
chr6:55450136-55449996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
331-473
               

               
Cow position:
               
chr6:67963853-67963999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
331-521
               

               
Cow position:
               
chr6:16352161-16352348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
163, 34
               

               
Conread position:
               
331-527
               

               
Cow position:
               
chr6:6067502-6067698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
75, 192
               

               
Conread position:
               
332-530
               

               
Cow position:
               
chr6:8637478-8637278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
141, 42
               

               
Conread position:
               
332-533
               

               
Cow position:
               
chr6:65259291-65259489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
12, 48
               

               
Conread position:
               
332-533
               

               
Cow position:
               
chr6:67282092-67281891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
197, 170
               

               
Conread position:
               
335-533
               

               
Cow position:
               
chr6:20097764-20097961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
337-527
               

               
Cow position:
               
chr6:40713313-40713502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
337-533
               

               
Cow position:
               
chr6:55502969-55502763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
338-479
               

               
Cow position:
               
chr6:58076591-58076444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
340-528
               

               
Cow position:
               
chr6:528098-528283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
182, 16
               

               
Conread position:
               
343-476
               

               
Cow position:
               
chr6:32986438-32986572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
343-532
               

               
Cow position:
               
chr6:68652162-68652354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
347-516
               

               
Cow position:
               
chr6:16707193-16707029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
347-533
               

               
Cow position:
               
chr6:48112382-48112195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
32, 119
               

               
Conread position:
               
348-526
               

               
Cow position:
               
chr6:21111134-21110953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 13
               

               
Conread position:
               
349-533
               

               
Cow position:
               
chr6:51086247-51086068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
351-476
               

               
Cow position:
               
chr6:67305246-67305123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
351-533
               

               
Cow position:
               
chr6:10487764-10487585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
353-533
               

               
Cow position:
               
chr6:36284416-36284240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
148, 17
               

               
Conread position:
               
354-499
               

               
Cow position:
               
chr6:43651929-43651783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
354-533
               

               
Cow position:
               
chr6:20196126-20196300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 108
               

               
Conread position:
               
354-533
               

               
Cow position:
               
chr6:36652599-36652417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
356-532
               

               
Cow position:
               
chr6:582099-582273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
356-533
               

               
Cow position:
               
chr6:51969248-51969074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
359-533
               

               
Cow position:
               
chr6:18144368-18144189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
114, 173
               

               
Conread position:
               
359-533
               

               
Cow position:
               
chr6:59069449-59069628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
360-466
               

               
Cow position:
               
chr6:416295-416189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
360-470
               

               
Cow position:
               
chr6:47676182-47676072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
103, 88
               

               
Conread position:
               
360-474
               

               
Cow position:
               
chr6:14896864-14896978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
360-483
               

               
Cow position:
               
chr6:34512874-34512750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
20, 65
               

               
Conread position:
               
360-498
               

               
Cow position:
               
chr6:51463466-51463601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
360-519
               

               
Cow position:
               
chr6:54867687-54867528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
360-521
               

               
Cow position:
               
chr6:60451598-60451437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 142
               

               
Conread position:
               
360-525
               

               
Cow position:
               
chr6:23465863-23466027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 87
               

               
Conread position:
               
360-526
               

               
Cow position:
               
chr6:51675078-51674916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
23, 42
               

               
Conread position:
               
360-527
               

               
Cow position:
               
chr6:30974206-30974049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
360-529
               

               
Cow position:
               
chr6:61142391-61142562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
360-531
               

               
Cow position:
               
chr6:1002093-1002263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
360-533
               

               
Cow position:
               
chr6:10224361-10224199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
360-533
               

               
Cow position:
               
chr6:19131602-19131427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
360-533
               

               
Cow position:
               
chr6:47799463-47799290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
360-533
               

               
Cow position:
               
chr6:55535582-55535751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
361-508
               

               
Cow position:
               
chr6:21066716-21066862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
361-519
               

               
Cow position:
               
chr6:67456887-67456729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
361-529
               

               
Cow position:
               
chr6:54990832-54991003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
361-533
               

               
Cow position:
               
chr6:9750889-9751056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
157, 11
               

               
Conread position:
               
361-533
               

               
Cow position:
               
chr6:37199369-37199532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
161, 47
               

               
Conread position:
               
361-533
               

               
Cow position:
               
chr6:46331087-46330923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
362-509
               

               
Cow position:
               
chr6:67214917-67214770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
362-533
               

               
Cow position:
               
chr6:37783568-37783399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
363-488
               

               
Cow position:
               
chr6:28900495-28900368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
363-520
               

               
Cow position:
               
chr6:6401119-6400964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
16, 33
               

               
Conread position:
               
363-521
               

               
Cow position:
               
chr6:5302254-5302410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
363-523
               

               
Cow position:
               
chr6:32809448-32809278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
363-524
               

               
Cow position:
               
chr6:41937102-41937266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
363-529
               

               
Cow position:
               
chr6:21869484-21869649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
164, 11
               

               
Conread position:
               
363-531
               

               
Cow position:
               
chr6:28178788-28178948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
363-531
               

               
Cow position:
               
chr6:59301621-59301788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
120, 159
               

               
Conread position:
               
363-533
               

               
Cow position:
               
chr6:6343596-6343426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
363-533
               

               
Cow position:
               
chr6:14958173-14958347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
363-533
               

               
Cow position:
               
chr6:21235210-21235040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
101, 148
               

               
Conread position:
               
365-505
               

               
Cow position:
               
chr6:52044779-52044914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
365-533
               

               
Cow position:
               
chr6:18048855-18049027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
365-533
               

               
Cow position:
               
chr6:47339191-47339360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
365-533
               

               
Cow position:
               
chr6:49002576-49002734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
366-518
               

               
Cow position:
               
chr6:35103164-35103316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
115, 121
               

               
Conread position:
               
366-531
               

               
Cow position:
               
chr6:53090172-53090007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
156, 28
               

               
Conread position:
               
367-519
               

               
Cow position:
               
chr6:67805852-67806004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
368-499
               

               
Cow position:
               
chr6:60516786-60516656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
368-527
               

               
Cow position:
               
chr6:60667571-60667417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
368-530
               

               
Cow position:
               
chr6:58597344-58597508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
369-525
               

               
Cow position:
               
chr6:54573419-54573264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
371-499
               

               
Cow position:
               
chr6:58590431-58590304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
372-532
               

               
Cow position:
               
chr6:8787879-8788040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
373-527
               

               
Cow position:
               
chr6:12845535-12845384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
19, 5
               

               
Conread position:
               
374-531
               

               
Cow position:
               
chr6:57164581-57164428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
374-533
               

               
Cow position:
               
chr6:51294441-51294281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
378-507
               

               
Cow position:
               
chr6:66375181-66375310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
378-525
               

               
Cow position:
               
chr6:38218819-38218673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
6, 84
               

               
Conread position:
               
378-529
               

               
Cow position:
               
chr6:19681373-19681526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
378-530
               

               
Cow position:
               
chr6:28976888-28977039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
123, 131
               

               
Conread position:
               
378-533
               

               
Cow position:
               
chr6:19013215-19013066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
381-527
               

               
Cow position:
               
chr6:11137383-11137234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
51, 88
               

               
Conread position:
               
383-524
               

               
Cow position:
               
chr6:32853334-32853193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
136, 74
               

               
Conread position:
               
383-531
               

               
Cow position:
               
chr6:47640286-47640433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
384-517
               

               
Cow position:
               
chr6:57328248-57328380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
386-533
               

               
Cow position:
               
chr6:4864403-4864550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
386-533
               

               
Cow position:
               
chr6:66874493-66874348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
134, 16
               

               
Conread position:
               
387-533
               

               
Cow position:
               
chr6:36012045-36011904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
394-532
               

               
Cow position:
               
chr6:51387885-51387747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
395-524
               

               
Cow position:
               
chr6:28318531-28318406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
405-532
               

               
Cow position:
               
chr6:12542805-12542934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
111, 0
               
Show alignments to all cow chromosomes.