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Cow genome map

           
Conread name:
           
Pig2-110D05
        

               
Conread position:
               
16-260
               

               
Cow position:
               
chr28:5805960-5805708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
5, 123
               

               
Conread position:
               
21-324
               

               
Cow position:
               
chr28:17680907-17680599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
30-249
               

               
Cow position:
               
chr28:16159595-16159819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
52-361
               

               
Cow position:
               
chr28:34843322-34843623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
81, 52
               

               
Conread position:
               
54-568
               

               
Cow position:
               
chr28:21845199-21844695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 29
               

               
Conread position:
               
57-552
               

               
Cow position:
               
chr28:10615701-10616197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
62-553
               

               
Cow position:
               
chr28:18791279-18790764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 170
               

               
Conread position:
               
66-456
               

               
Cow position:
               
chr28:21046349-21046719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
67, 124
               

               
Conread position:
               
70-465
               

               
Cow position:
               
chr28:5200064-5199668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
32, 216
               

               
Conread position:
               
70-493
               

               
Cow position:
               
chr28:24966622-24966203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 44
               

               
Conread position:
               
70-575
               

               
Cow position:
               
chr28:14508147-14508636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 101
               

               
Conread position:
               
71-339
               

               
Cow position:
               
chr28:17948883-17949151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
71-509
               

               
Cow position:
               
chr28:33284888-33285315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 67
               

               
Conread position:
               
71-574
               

               
Cow position:
               
chr28:5931579-5931086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 62
               

               
Conread position:
               
74-271
               

               
Cow position:
               
chr28:21744946-21744745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
76-310
               

               
Cow position:
               
chr28:24996388-24996622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
77-296
               

               
Cow position:
               
chr28:10480575-10480806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
78-250
               

               
Cow position:
               
chr28:9070114-9069939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 103
               

               
Conread position:
               
78-473
               

               
Cow position:
               
chr28:4159193-4158790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
25, 236
               

               
Conread position:
               
78-477
               

               
Cow position:
               
chr28:26265060-26264630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
78-532
               

               
Cow position:
               
chr28:33036257-33036694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
107, 55
               

               
Conread position:
               
79-244
               

               
Cow position:
               
chr28:22170055-22170221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 157
               

               
Conread position:
               
79-296
               

               
Cow position:
               
chr28:4022903-4022678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
79-297
               

               
Cow position:
               
chr28:19038790-19039015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
79-449
               

               
Cow position:
               
chr28:5273201-5273581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 6
               

               
Conread position:
               
79-532
               

               
Cow position:
               
chr28:5144286-5144751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 232
               

               
Conread position:
               
80-296
               

               
Cow position:
               
chr28:5552480-5552709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
18, 220
               

               
Conread position:
               
80-300
               

               
Cow position:
               
chr28:14242921-14242694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
80-552
               

               
Cow position:
               
chr28:16214660-16215137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
80-558
               

               
Cow position:
               
chr28:662327-661869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 98
               

               
Conread position:
               
80-572
               

               
Cow position:
               
chr28:5818064-5817579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
81-281
               

               
Cow position:
               
chr28:118837-118629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
81-294
               

               
Cow position:
               
chr28:13269941-13269738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
52, 22
               

               
Conread position:
               
81-295
               

               
Cow position:
               
chr28:117535-117757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
81-324
               

               
Cow position:
               
chr28:11307293-11307541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
97, 52
               

               
Conread position:
               
81-474
               

               
Cow position:
               
chr28:11798550-11798971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
21, 136
               

               
Conread position:
               
81-532
               

               
Cow position:
               
chr28:10606413-10606848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
53, 68
               

               
Conread position:
               
81-553
               

               
Cow position:
               
chr28:7684441-7684924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 186
               

               
Conread position:
               
81-553
               

               
Cow position:
               
chr28:16085543-16085077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
82-257
               

               
Cow position:
               
chr28:16252184-16252362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 150
               

               
Conread position:
               
82-261
               

               
Cow position:
               
chr28:8283475-8283664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
23, 87
               

               
Conread position:
               
82-265
               

               
Cow position:
               
chr28:3759219-3759026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
82-324
               

               
Cow position:
               
chr28:13356139-13356390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 7
               

               
Conread position:
               
82-336
               

               
Cow position:
               
chr28:11059715-11059467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 109
               

               
Conread position:
               
82-411
               

               
Cow position:
               
chr28:3484810-3484474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
50, 222
               

               
Conread position:
               
82-411
               

               
Cow position:
               
chr28:6358186-6358513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 213
               

               
Conread position:
               
82-530
               

               
Cow position:
               
chr28:8347963-8347508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 255
               

               
Conread position:
               
82-547
               

               
Cow position:
               
chr28:4307670-4308139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
82-550
               

               
Cow position:
               
chr28:30293358-30293834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
30, 205
               

               
Conread position:
               
82-553
               

               
Cow position:
               
chr28:34877748-34878220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
51, 134
               

               
Conread position:
               
82-570
               

               
Cow position:
               
chr28:5204404-5203939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 7
               

               
Conread position:
               
83-263
               

               
Cow position:
               
chr28:1930686-1930858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
83-297
               

               
Cow position:
               
chr28:8396545-8396339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
83-333
               

               
Cow position:
               
chr28:17012083-17012327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
237, 24
               

               
Conread position:
               
83-338
               

               
Cow position:
               
chr28:11987386-11987136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
190, 43
               

               
Conread position:
               
83-338
               

               
Cow position:
               
chr28:12055624-12055374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
190, 43
               

               
Conread position:
               
83-342
               

               
Cow position:
               
chr28:777899-777634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
83-370
               

               
Cow position:
               
chr28:33322674-33322396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
106, 29
               

               
Conread position:
               
83-554
               

               
Cow position:
               
chr28:20125006-20124537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 86
               

               
Conread position:
               
84-335
               

               
Cow position:
               
chr28:7437253-7437495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
84-445
               

               
Cow position:
               
chr28:23447610-23447963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
84-553
               

               
Cow position:
               
chr28:21103597-21104094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 138
               

               
Conread position:
               
85-263
               

               
Cow position:
               
chr28:2593890-2593719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 47
               

               
Conread position:
               
85-284
               

               
Cow position:
               
chr28:27445352-27445556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
85-497
               

               
Cow position:
               
chr28:4881030-4881439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 21
               

               
Conread position:
               
85-515
               

               
Cow position:
               
chr28:1838217-1837779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
48, 176
               

               
Conread position:
               
86-575
               

               
Cow position:
               
chr28:3769463-3769923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
301, 44
               

               
Conread position:
               
87-249
               

               
Cow position:
               
chr28:12691363-12691209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
87-328
               

               
Cow position:
               
chr28:17740041-17739799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
87-408
               

               
Cow position:
               
chr28:25129103-25128783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 172
               

               
Conread position:
               
87-484
               

               
Cow position:
               
chr28:11828740-11829118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 93
               

               
Conread position:
               
87-554
               

               
Cow position:
               
chr28:616590-616155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 88
               

               
Conread position:
               
87-574
               

               
Cow position:
               
chr28:30607978-30608448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 46
               

               
Conread position:
               
88-233
               

               
Cow position:
               
chr28:5428537-5428686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
88-515
               

               
Cow position:
               
chr28:22371456-22371890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
88-551
               

               
Cow position:
               
chr28:26719545-26719115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
89-247
               

               
Cow position:
               
chr28:26574614-26574464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
89-250
               

               
Cow position:
               
chr28:6301301-6301132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
89-256
               

               
Cow position:
               
chr28:26304283-26304108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
89-261
               

               
Cow position:
               
chr28:16200524-16200703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
89-279
               

               
Cow position:
               
chr28:2892473-2892274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
89-279
               

               
Cow position:
               
chr28:3678576-3678384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
89-297
               

               
Cow position:
               
chr28:4163363-4163575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 184
               

               
Conread position:
               
89-305
               

               
Cow position:
               
chr28:19395079-19394871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
89-316
               

               
Cow position:
               
chr28:13048064-13048298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
89-332
               

               
Cow position:
               
chr28:21008454-21008696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
89-337
               

               
Cow position:
               
chr28:6283273-6283523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
89-370
               

               
Cow position:
               
chr28:5630316-5630028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
44, 145
               

               
Conread position:
               
89-370
               

               
Cow position:
               
chr28:20759478-20759759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
89-408
               

               
Cow position:
               
chr28:23296535-23296224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
89-440
               

               
Cow position:
               
chr28:3449526-3449164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
45, 244
               

               
Conread position:
               
89-474
               

               
Cow position:
               
chr28:11866451-11866835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 241
               

               
Conread position:
               
89-487
               

               
Cow position:
               
chr28:12400458-12400028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
89-493
               

               
Cow position:
               
chr28:23724253-23724645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
89-503
               

               
Cow position:
               
chr28:27313513-27313948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
89-530
               

               
Cow position:
               
chr28:4884036-4884494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 218
               

               
Conread position:
               
89-553
               

               
Cow position:
               
chr28:7697762-7698228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 184
               

               
Conread position:
               
89-567
               

               
Cow position:
               
chr28:22332744-22332288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
89-567
               

               
Cow position:
               
chr28:23531079-23530602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 24
               

               
Conread position:
               
89-574
               

               
Cow position:
               
chr28:24672488-24672003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
23, 221
               

               
Conread position:
               
89-574
               

               
Cow position:
               
chr28:27218546-27218052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 166
               

               
Conread position:
               
90-240
               

               
Cow position:
               
chr28:3727191-3727048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
90-245
               

               
Cow position:
               
chr28:3311006-3311168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
90-264
               

               
Cow position:
               
chr28:25518540-25518728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 41
               

               
Conread position:
               
90-285
               

               
Cow position:
               
chr28:5674088-5673891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 86
               

               
Conread position:
               
90-293
               

               
Cow position:
               
chr28:4877214-4877423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
90-297
               

               
Cow position:
               
chr28:26784040-26784237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 78
               

               
Conread position:
               
90-298
               

               
Cow position:
               
chr28:2821478-2821256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
90-313
               

               
Cow position:
               
chr28:7131875-7132099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 176
               

               
Conread position:
               
90-313
               

               
Cow position:
               
chr28:15362794-15362567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
90-321
               

               
Cow position:
               
chr28:11743612-11743839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
41, 54
               

               
Conread position:
               
90-431
               

               
Cow position:
               
chr28:5193540-5193193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
11, 42
               

               
Conread position:
               
90-513
               

               
Cow position:
               
chr28:5436872-5437301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
90-515
               

               
Cow position:
               
chr28:12598551-12598134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
90-553
               

               
Cow position:
               
chr28:11527045-11527503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
90-554
               

               
Cow position:
               
chr28:11584993-11585456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
90-572
               

               
Cow position:
               
chr28:4071174-4070702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 41
               

               
Conread position:
               
90-576
               

               
Cow position:
               
chr28:16204115-16204599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
91-247
               

               
Cow position:
               
chr28:12448434-12448283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
91-263
               

               
Cow position:
               
chr28:24651390-24651568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
91-285
               

               
Cow position:
               
chr28:7644960-7644756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
21, 141
               

               
Conread position:
               
91-294
               

               
Cow position:
               
chr28:9109425-9109223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
91-323
               

               
Cow position:
               
chr28:19217028-19216800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
8, 75
               

               
Conread position:
               
91-336
               

               
Cow position:
               
chr28:10959014-10958766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
42, 230
               

               
Conread position:
               
91-473
               

               
Cow position:
               
chr28:4643555-4643931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 213
               

               
Conread position:
               
91-497
               

               
Cow position:
               
chr28:4809985-4809600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
295, 38
               

               
Conread position:
               
91-553
               

               
Cow position:
               
chr28:16918960-16919411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
91-553
               

               
Cow position:
               
chr28:34636894-34636431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 87
               

               
Conread position:
               
91-554
               

               
Cow position:
               
chr28:6059255-6059721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
92-236
               

               
Cow position:
               
chr28:16459322-16459186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
92-237
               

               
Cow position:
               
chr28:5294788-5294937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
92-261
               

               
Cow position:
               
chr28:26960699-26960869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
42, 105
               

               
Conread position:
               
92-271
               

               
Cow position:
               
chr28:17943938-17943760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
92-332
               

               
Cow position:
               
chr28:12991347-12991105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
92-552
               

               
Cow position:
               
chr28:34134072-34133618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
42, 60
               

               
Conread position:
               
93-244
               

               
Cow position:
               
chr28:22278412-22278575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
93-274
               

               
Cow position:
               
chr28:8936358-8936177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
93-280
               

               
Cow position:
               
chr28:17620147-17620339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
93-325
               

               
Cow position:
               
chr28:3725996-3726236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
93-431
               

               
Cow position:
               
chr28:22813462-22813141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
93-459
               

               
Cow position:
               
chr28:24082483-24082116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 244
               

               
Conread position:
               
93-532
               

               
Cow position:
               
chr28:9100141-9099706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 30
               

               
Conread position:
               
93-551
               

               
Cow position:
               
chr28:3078483-3078923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
93-553
               

               
Cow position:
               
chr28:3143672-3144137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 87
               

               
Conread position:
               
93-553
               

               
Cow position:
               
chr28:3741078-3740605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
243, 31
               

               
Conread position:
               
93-553
               

               
Cow position:
               
chr28:9426140-9426589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
93-569
               

               
Cow position:
               
chr28:25727581-25727119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
94-239
               

               
Cow position:
               
chr28:18740284-18740430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 103
               

               
Conread position:
               
94-281
               

               
Cow position:
               
chr28:2077713-2077520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
94-285
               

               
Cow position:
               
chr28:11827900-11827704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
40, 176
               

               
Conread position:
               
94-289
               

               
Cow position:
               
chr28:32014997-32014796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
94-294
               

               
Cow position:
               
chr28:20046754-20046560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 77
               

               
Conread position:
               
94-297
               

               
Cow position:
               
chr28:5441688-5441893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
94-326
               

               
Cow position:
               
chr28:11398582-11398822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
94-331
               

               
Cow position:
               
chr28:10298051-10297826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
94-332
               

               
Cow position:
               
chr28:4823813-4823573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
38, 49
               

               
Conread position:
               
94-347
               

               
Cow position:
               
chr28:8827376-8827119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 180
               

               
Conread position:
               
94-451
               

               
Cow position:
               
chr28:10057375-10057738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
64, 39
               

               
Conread position:
               
94-454
               

               
Cow position:
               
chr28:10495088-10495426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
89, 29
               

               
Conread position:
               
94-523
               

               
Cow position:
               
chr28:12046697-12047119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
39, 222
               

               
Conread position:
               
94-547
               

               
Cow position:
               
chr28:11422607-11423045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
94-553
               

               
Cow position:
               
chr28:20963334-20963779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 76
               

               
Conread position:
               
94-554
               

               
Cow position:
               
chr28:5827142-5826700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
94-556
               

               
Cow position:
               
chr28:22133120-22132676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
94-569
               

               
Cow position:
               
chr28:8787751-8787288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 147
               

               
Conread position:
               
94-570
               

               
Cow position:
               
chr28:25700660-25701121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 9
               

               
Conread position:
               
95-249
               

               
Cow position:
               
chr28:4588523-4588370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
95-258
               

               
Cow position:
               
chr28:32372447-32372288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
95-297
               

               
Cow position:
               
chr28:5609707-5609912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
95-297
               

               
Cow position:
               
chr28:6563683-6563894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
95-305
               

               
Cow position:
               
chr28:17737938-17738161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
6, 120
               

               
Conread position:
               
95-414
               

               
Cow position:
               
chr28:26372932-26372629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
95-449
               

               
Cow position:
               
chr28:7008770-7009118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 206
               

               
Conread position:
               
95-505
               

               
Cow position:
               
chr28:5224914-5224511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 17
               

               
Conread position:
               
95-532
               

               
Cow position:
               
chr28:11884321-11884751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 17
               

               
Conread position:
               
95-543
               

               
Cow position:
               
chr28:25825673-25826108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
40, 70
               

               
Conread position:
               
95-553
               

               
Cow position:
               
chr28:16369879-16370321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
96-330
               

               
Cow position:
               
chr28:24707112-24706869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
6, 34
               

               
Conread position:
               
96-457
               

               
Cow position:
               
chr28:30746529-30746880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
97-553
               

               
Cow position:
               
chr28:13474508-13474059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 219
               

               
Conread position:
               
98-250
               

               
Cow position:
               
chr28:3494569-3494406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
98-259
               

               
Cow position:
               
chr28:4866370-4866532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
98-287
               

               
Cow position:
               
chr28:7964470-7964663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
98-288
               

               
Cow position:
               
chr28:4182209-4182014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
98-296
               

               
Cow position:
               
chr28:3137761-3137548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
98-297
               

               
Cow position:
               
chr28:17727904-17728095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
98-307
               

               
Cow position:
               
chr28:8515982-8516191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
98-317
               

               
Cow position:
               
chr28:8259840-8259612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 223
               

               
Conread position:
               
98-334
               

               
Cow position:
               
chr28:4013291-4013051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
98-477
               

               
Cow position:
               
chr28:20409599-20409219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
98-491
               

               
Cow position:
               
chr28:19564027-19564410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
98-513
               

               
Cow position:
               
chr28:5074313-5074714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
36, 92
               

               
Conread position:
               
98-514
               

               
Cow position:
               
chr28:29416517-29416927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 89
               

               
Conread position:
               
98-547
               

               
Cow position:
               
chr28:22346230-22345778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
98-553
               

               
Cow position:
               
chr28:25057164-25056724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
98-569
               

               
Cow position:
               
chr28:22500298-22500744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
98-573
               

               
Cow position:
               
chr28:23410126-23410589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
99-297
               

               
Cow position:
               
chr28:5236080-5235885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
99-433
               

               
Cow position:
               
chr28:11346282-11346613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 229
               

               
Conread position:
               
99-445
               

               
Cow position:
               
chr28:22571478-22571805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 14
               

               
Conread position:
               
99-456
               

               
Cow position:
               
chr28:13527405-13527052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
84, 185
               

               
Conread position:
               
100-294
               

               
Cow position:
               
chr28:7014660-7014460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
100-413
               

               
Cow position:
               
chr28:11814873-11815188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 226
               

               
Conread position:
               
100-417
               

               
Cow position:
               
chr28:3011061-3011382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 160
               

               
Conread position:
               
100-424
               

               
Cow position:
               
chr28:31223351-31223680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
33, 203
               

               
Conread position:
               
100-495
               

               
Cow position:
               
chr28:26982530-26982938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 206
               

               
Conread position:
               
100-532
               

               
Cow position:
               
chr28:31649269-31648845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
86, 27
               

               
Conread position:
               
100-546
               

               
Cow position:
               
chr28:26220457-26220021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
92, 17
               

               
Conread position:
               
103-569
               

               
Cow position:
               
chr28:15601477-15601002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
29, 168
               

               
Conread position:
               
104-552
               

               
Cow position:
               
chr28:7267747-7268182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 160
               

               
Conread position:
               
105-289
               

               
Cow position:
               
chr28:5188228-5188417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
105-296
               

               
Cow position:
               
chr28:20968375-20968575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
105-325
               

               
Cow position:
               
chr28:4937038-4937266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
105-484
               

               
Cow position:
               
chr28:6091557-6091184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
106-249
               

               
Cow position:
               
chr28:21263354-21263209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
106-250
               

               
Cow position:
               
chr28:24238284-24238426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
106-256
               

               
Cow position:
               
chr28:26867954-26868107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
106-260
               

               
Cow position:
               
chr28:16767409-16767555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 67
               

               
Conread position:
               
106-263
               

               
Cow position:
               
chr28:22362443-22362291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
106-264
               

               
Cow position:
               
chr28:16856906-16857071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
106-273
               

               
Cow position:
               
chr28:4379500-4379664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
106-279
               

               
Cow position:
               
chr28:4027269-4027440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 65
               

               
Conread position:
               
106-283
               

               
Cow position:
               
chr28:20281948-20281776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
106-285
               

               
Cow position:
               
chr28:10890542-10890719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
106-285
               

               
Cow position:
               
chr28:26530668-26530850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 7
               

               
Conread position:
               
106-291
               

               
Cow position:
               
chr28:26820076-26820268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 134
               

               
Conread position:
               
106-297
               

               
Cow position:
               
chr28:19994746-19994942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 165
               

               
Conread position:
               
106-297
               

               
Cow position:
               
chr28:30902321-30902130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
106-313
               

               
Cow position:
               
chr28:29850622-29850827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
32, 74
               

               
Conread position:
               
106-339
               

               
Cow position:
               
chr28:6975434-6975205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
106-341
               

               
Cow position:
               
chr28:4186103-4185867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 205
               

               
Conread position:
               
106-375
               

               
Cow position:
               
chr28:7618960-7619215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
106-443
               

               
Cow position:
               
chr28:19262384-19262727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 201
               

               
Conread position:
               
106-450
               

               
Cow position:
               
chr28:10863600-10863927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 25
               

               
Conread position:
               
106-473
               

               
Cow position:
               
chr28:29988908-29989281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
106-477
               

               
Cow position:
               
chr28:8291613-8291263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
106-502
               

               
Cow position:
               
chr28:10845302-10844920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
106-514
               

               
Cow position:
               
chr28:751428-751014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 132
               

               
Conread position:
               
106-517
               

               
Cow position:
               
chr28:25973742-25973316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
27, 190
               

               
Conread position:
               
106-531
               

               
Cow position:
               
chr28:10053132-10053566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 25
               

               
Conread position:
               
106-543
               

               
Cow position:
               
chr28:9285177-9285615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 146
               

               
Conread position:
               
106-545
               

               
Cow position:
               
chr28:9636257-9636696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
27, 156
               

               
Conread position:
               
106-546
               

               
Cow position:
               
chr28:12951616-12951191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 161
               

               
Conread position:
               
106-552
               

               
Cow position:
               
chr28:3023716-3024158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
106-552
               

               
Cow position:
               
chr28:21502582-21502149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
106-553
               

               
Cow position:
               
chr28:3492587-3493031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 27
               

               
Conread position:
               
106-553
               

               
Cow position:
               
chr28:5236395-5236847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 236
               

               
Conread position:
               
106-553
               

               
Cow position:
               
chr28:11426348-11426792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
106-553
               

               
Cow position:
               
chr28:23616605-23616155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 107
               

               
Conread position:
               
106-554
               

               
Cow position:
               
chr28:21868657-21868204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 214
               

               
Conread position:
               
106-554
               

               
Cow position:
               
chr28:28765703-28766158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 25
               

               
Conread position:
               
106-567
               

               
Cow position:
               
chr28:3746397-3745940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
106-569
               

               
Cow position:
               
chr28:23007542-23007990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 65
               

               
Conread position:
               
106-575
               

               
Cow position:
               
chr28:23793120-23793569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
106-577
               

               
Cow position:
               
chr28:4016723-4016265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
308, 29
               

               
Conread position:
               
107-297
               

               
Cow position:
               
chr28:18797509-18797324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
107-532
               

               
Cow position:
               
chr28:33163277-33163696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
107-553
               

               
Cow position:
               
chr28:1099478-1099889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
107-553
               

               
Cow position:
               
chr28:9740657-9740224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
26, 58
               

               
Conread position:
               
110-327
               

               
Cow position:
               
chr28:7350846-7350628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
110-416
               

               
Cow position:
               
chr28:32366075-32366345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
110-431
               

               
Cow position:
               
chr28:12672265-12672587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
23, 198
               

               
Conread position:
               
110-553
               

               
Cow position:
               
chr28:5684896-5684457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
23, 97
               

               
Conread position:
               
110-555
               

               
Cow position:
               
chr28:24343549-24343120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
111-282
               

               
Cow position:
               
chr28:22085350-22085523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
111-290
               

               
Cow position:
               
chr28:26826417-26826228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 113
               

               
Conread position:
               
111-295
               

               
Cow position:
               
chr28:6322014-6321823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 116
               

               
Conread position:
               
111-296
               

               
Cow position:
               
chr28:2777725-2777535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
111-532
               

               
Cow position:
               
chr28:34430228-34430655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 10
               

               
Conread position:
               
111-573
               

               
Cow position:
               
chr28:25400062-25399624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
32, 24
               

               
Conread position:
               
111-575
               

               
Cow position:
               
chr28:23460339-23459870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 112
               

               
Conread position:
               
112-295
               

               
Cow position:
               
chr28:12974078-12973887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
112-380
               

               
Cow position:
               
chr28:5650552-5650807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
112-417
               

               
Cow position:
               
chr28:12933542-12933840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
112-567
               

               
Cow position:
               
chr28:14998258-14997802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
113-283
               

               
Cow position:
               
chr28:3423970-3423795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
113-319
               

               
Cow position:
               
chr28:5232133-5231920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
113-321
               

               
Cow position:
               
chr28:3200655-3200439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
113-324
               

               
Cow position:
               
chr28:13133828-13133609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
113-554
               

               
Cow position:
               
chr28:4282296-4282740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 161
               

               
Conread position:
               
114-297
               

               
Cow position:
               
chr28:11451313-11451488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
114-297
               

               
Cow position:
               
chr28:16879760-16879577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
114-485
               

               
Cow position:
               
chr28:21363932-21363566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 17
               

               
Conread position:
               
114-532
               

               
Cow position:
               
chr28:13866015-13865617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 55
               

               
Conread position:
               
114-551
               

               
Cow position:
               
chr28:16346346-16346771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
115-553
               

               
Cow position:
               
chr28:26743822-26743375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 219
               

               
Conread position:
               
116-336
               

               
Cow position:
               
chr28:20397176-20397404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
15, 223
               

               
Conread position:
               
117-417
               

               
Cow position:
               
chr28:18369824-18370117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 140
               

               
Conread position:
               
118-322
               

               
Cow position:
               
chr28:555684-555483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
118-420
               

               
Cow position:
               
chr28:26055666-26055363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
16, 228
               

               
Conread position:
               
121-571
               

               
Cow position:
               
chr28:10745401-10744943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
6, 213
               

               
Conread position:
               
123-553
               

               
Cow position:
               
chr28:16210918-16211344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
10, 181
               

               
Conread position:
               
125-502
               

               
Cow position:
               
chr28:4138486-4138868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
8, 206
               

               
Conread position:
               
126-530
               

               
Cow position:
               
chr28:7512401-7512818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
7, 165
               

               
Conread position:
               
130-398
               

               
Cow position:
               
chr28:11559458-11559724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
130-553
               

               
Cow position:
               
chr28:26103873-26103468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 75
               

               
Conread position:
               
131-551
               

               
Cow position:
               
chr28:14649515-14649102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
131-552
               

               
Cow position:
               
chr28:30303034-30303439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
132-302
               

               
Cow position:
               
chr28:22630177-22630011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
86, 54
               

               
Conread position:
               
133-299
               

               
Cow position:
               
chr28:27429198-27429033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
134-553
               

               
Cow position:
               
chr28:2819943-2819511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 244
               

               
Conread position:
               
137-330
               

               
Cow position:
               
chr28:19294965-19295158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 124
               

               
Conread position:
               
139-296
               

               
Cow position:
               
chr28:34097462-34097610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
140-291
               

               
Cow position:
               
chr28:9418804-9418956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
142-444
               

               
Cow position:
               
chr28:9812435-9812144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
145-298
               

               
Cow position:
               
chr28:8167193-8167347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 137
               

               
Conread position:
               
145-474
               

               
Cow position:
               
chr28:2752338-2752666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
155-260
               

               
Cow position:
               
chr28:24726290-24726396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
155-554
               

               
Cow position:
               
chr28:25596773-25596384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 33
               

               
Conread position:
               
156-369
               

               
Cow position:
               
chr28:7776356-7776560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
156-489
               

               
Cow position:
               
chr28:18759912-18760228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
191, 12
               

               
Conread position:
               
157-455
               

               
Cow position:
               
chr28:25728342-25728049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
19, 112
               

               
Conread position:
               
157-552
               

               
Cow position:
               
chr28:16386371-16386752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
159-548
               

               
Cow position:
               
chr28:25249495-25249113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 20
               

               
Conread position:
               
160-278
               

               
Cow position:
               
chr28:5867860-5867744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
160-567
               

               
Cow position:
               
chr28:6971204-6971601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
23, 142
               

               
Conread position:
               
161-321
               

               
Cow position:
               
chr28:23047759-23047600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
164-447
               

               
Cow position:
               
chr28:27161189-27161472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
20, 72
               

               
Conread position:
               
167-274
               

               
Cow position:
               
chr28:8258959-8258851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
167-297
               

               
Cow position:
               
chr28:29041919-29042050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
167-319
               

               
Cow position:
               
chr28:18770213-18770066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
167-324
               

               
Cow position:
               
chr28:7388639-7388790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
167-325
               

               
Cow position:
               
chr28:2772845-2772689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
167-399
               

               
Cow position:
               
chr28:8147731-8147953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
210, 12
               

               
Conread position:
               
167-474
               

               
Cow position:
               
chr28:2131789-2132088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
167-476
               

               
Cow position:
               
chr28:32174764-32174466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
17, 140
               

               
Conread position:
               
167-495
               

               
Cow position:
               
chr28:10999546-10999860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
243, 12
               

               
Conread position:
               
167-550
               

               
Cow position:
               
chr28:16110072-16109700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
26, 40
               

               
Conread position:
               
167-553
               

               
Cow position:
               
chr28:2899124-2898748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 156
               

               
Conread position:
               
167-553
               

               
Cow position:
               
chr28:19079710-19080095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
17, 102
               

               
Conread position:
               
167-553
               

               
Cow position:
               
chr28:22321555-22321175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 132
               

               
Conread position:
               
167-554
               

               
Cow position:
               
chr28:19222017-19222393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 139
               

               
Conread position:
               
167-554
               

               
Cow position:
               
chr28:20313414-20313027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 155
               

               
Conread position:
               
167-575
               

               
Cow position:
               
chr28:19025872-19026271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 12
               

               
Conread position:
               
168-300
               

               
Cow position:
               
chr28:6053403-6053271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 20
               

               
Conread position:
               
168-329
               

               
Cow position:
               
chr28:34247899-34248057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
168-548
               

               
Cow position:
               
chr28:5365991-5366374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
169-553
               

               
Cow position:
               
chr28:11752008-11752392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 20
               

               
Conread position:
               
170-415
               

               
Cow position:
               
chr28:30865547-30865313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
207, 9
               

               
Conread position:
               
171-557
               

               
Cow position:
               
chr28:29434299-29434676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
243, 8
               

               
Conread position:
               
172-289
               

               
Cow position:
               
chr28:19024563-19024445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
172-297
               

               
Cow position:
               
chr28:18533777-18533902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
172-321
               

               
Cow position:
               
chr28:8149502-8149652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
172-450
               

               
Cow position:
               
chr28:4355676-4355403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
172-551
               

               
Cow position:
               
chr28:21355361-21354979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 138
               

               
Conread position:
               
172-552
               

               
Cow position:
               
chr28:33052166-33051774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
172-553
               

               
Cow position:
               
chr28:8021972-8022358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 77
               

               
Conread position:
               
172-553
               

               
Cow position:
               
chr28:10172287-10172661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
172-566
               

               
Cow position:
               
chr28:18591401-18591009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
172-567
               

               
Cow position:
               
chr28:4188683-4188264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
80, 293
               

               
Conread position:
               
173-297
               

               
Cow position:
               
chr28:12385165-12385289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
173-329
               

               
Cow position:
               
chr28:4765804-4765646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
173-408
               

               
Cow position:
               
chr28:25677212-25677441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 151
               

               
Conread position:
               
173-532
               

               
Cow position:
               
chr28:18354200-18354547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 6
               

               
Conread position:
               
174-553
               

               
Cow position:
               
chr28:29199856-29199480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
211, 5
               

               
Conread position:
               
177-573
               

               
Cow position:
               
chr28:8408849-8408469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
177-574
               

               
Cow position:
               
chr28:23676261-23675876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 18
               

               
Conread position:
               
178-538
               

               
Cow position:
               
chr28:11817841-11818194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
40, 148
               

               
Conread position:
               
178-574
               

               
Cow position:
               
chr28:7548934-7549332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
179-300
               

               
Cow position:
               
chr28:16692046-16691923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
179-518
               

               
Cow position:
               
chr28:15081800-15082139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 31
               

               
Conread position:
               
179-568
               

               
Cow position:
               
chr28:21873880-21873511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
180-570
               

               
Cow position:
               
chr28:7865450-7865065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
75, 139
               

               
Conread position:
               
181-503
               

               
Cow position:
               
chr28:5128607-5128929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 144
               

               
Conread position:
               
181-553
               

               
Cow position:
               
chr28:12619694-12619315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
179, 43
               

               
Conread position:
               
181-553
               

               
Cow position:
               
chr28:12964687-12964330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
194, 71
               

               
Conread position:
               
181-553
               

               
Cow position:
               
chr28:31109883-31110252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 121
               

               
Conread position:
               
181-567
               

               
Cow position:
               
chr28:21598130-21598515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 143
               

               
Conread position:
               
182-343
               

               
Cow position:
               
chr28:7156956-7156797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
182-369
               

               
Cow position:
               
chr28:7805303-7805481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
182-426
               

               
Cow position:
               
chr28:12999213-12998988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
182-570
               

               
Cow position:
               
chr28:34198989-34199361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
294, 55
               

               
Conread position:
               
182-574
               

               
Cow position:
               
chr28:14494942-14494563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
227, 34
               

               
Conread position:
               
183-366
               

               
Cow position:
               
chr28:32179811-32179630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
149, 82
               

               
Conread position:
               
183-370
               

               
Cow position:
               
chr28:4873227-4873406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
183-417
               

               
Cow position:
               
chr28:7372004-7372231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
192, 140
               

               
Conread position:
               
183-422
               

               
Cow position:
               
chr28:5166885-5166650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
185, 86
               

               
Conread position:
               
183-491
               

               
Cow position:
               
chr28:17601757-17602056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
190, 116
               

               
Conread position:
               
183-554
               

               
Cow position:
               
chr28:18934572-18934204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
183-574
               

               
Cow position:
               
chr28:26922250-26922633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 116
               

               
Conread position:
               
184-469
               

               
Cow position:
               
chr28:1632540-1632819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
187, 96
               

               
Conread position:
               
184-504
               

               
Cow position:
               
chr28:14512650-14512325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 160
               

               
Conread position:
               
185-296
               

               
Cow position:
               
chr28:8102829-8102940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
185-549
               

               
Cow position:
               
chr28:13176573-13176922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 77
               

               
Conread position:
               
185-553
               

               
Cow position:
               
chr28:14934074-14933715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
187, 89
               

               
Conread position:
               
186-495
               

               
Cow position:
               
chr28:21570303-21569996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
186, 9
               

               
Conread position:
               
188-552
               

               
Cow position:
               
chr28:15043749-15044101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
177, 71
               

               
Conread position:
               
189-532
               

               
Cow position:
               
chr28:21380992-21380649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
190-553
               

               
Cow position:
               
chr28:7228280-7228630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
213, 5
               

               
Conread position:
               
191-552
               

               
Cow position:
               
chr28:4058093-4057740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
191-552
               

               
Cow position:
               
chr28:13608008-13607639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
191-566
               

               
Cow position:
               
chr28:4841280-4841656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 108
               

               
Conread position:
               
192-515
               

               
Cow position:
               
chr28:26685225-26684901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
179, 22
               

               
Conread position:
               
192-570
               

               
Cow position:
               
chr28:2862977-2862598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
61, 65
               

               
Conread position:
               
193-575
               

               
Cow position:
               
chr28:32300249-32300628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
177, 39
               

               
Conread position:
               
194-553
               

               
Cow position:
               
chr28:23621644-23621301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
176, 41
               

               
Conread position:
               
194-553
               

               
Cow position:
               
chr28:31987721-31987358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
138, 104
               

               
Conread position:
               
195-571
               

               
Cow position:
               
chr28:2340644-2340267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
196-463
               

               
Cow position:
               
chr28:32365949-32365687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
180, 123
               

               
Conread position:
               
196-553
               

               
Cow position:
               
chr28:11786612-11786955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 129
               

               
Conread position:
               
198-553
               

               
Cow position:
               
chr28:2814406-2814746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
172, 67
               

               
Conread position:
               
198-553
               

               
Cow position:
               
chr28:13693852-13693502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 12
               

               
Conread position:
               
201-455
               

               
Cow position:
               
chr28:18186656-18186403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
174, 107
               

               
Conread position:
               
202-552
               

               
Cow position:
               
chr28:25564182-25563830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
168, 7
               

               
Conread position:
               
205-568
               

               
Cow position:
               
chr28:11931280-11931649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 120
               

               
Conread position:
               
208-512
               

               
Cow position:
               
chr28:4098923-4098637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
299, 99
               

               
Conread position:
               
208-574
               

               
Cow position:
               
chr28:9176662-9177021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
162, 11
               

               
Conread position:
               
209-513
               

               
Cow position:
               
chr28:25283286-25282995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
205, 53
               

               
Conread position:
               
209-556
               

               
Cow position:
               
chr28:5792800-5792452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
168, 90
               

               
Conread position:
               
213-575
               

               
Cow position:
               
chr28:11379954-11380313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
169, 7
               

               
Conread position:
               
215-553
               

               
Cow position:
               
chr28:10529404-10529730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
170, 104
               

               
Conread position:
               
216-547
               

               
Cow position:
               
chr28:16687111-16686791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
171, 16
               

               
Conread position:
               
216-571
               

               
Cow position:
               
chr28:13267874-13267518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
156, 46
               

               
Conread position:
               
220-474
               

               
Cow position:
               
chr28:17235655-17235894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
164, 56
               

               
Conread position:
               
220-552
               

               
Cow position:
               
chr28:6486675-6486347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
150, 22
               

               
Conread position:
               
221-515
               

               
Cow position:
               
chr28:12947029-12946726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
152, 102
               

               
Conread position:
               
221-551
               

               
Cow position:
               
chr28:25806653-25806344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
156, 97
               

               
Conread position:
               
221-552
               

               
Cow position:
               
chr28:11686948-11687279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
149, 14
               

               
Conread position:
               
224-553
               

               
Cow position:
               
chr28:17637788-17638114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
230-553
               

               
Cow position:
               
chr28:6960580-6960249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 66
               

               
Conread position:
               
237-553
               

               
Cow position:
               
chr28:22485317-22485001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
93, 113
               

               
Conread position:
               
239-567
               

               
Cow position:
               
chr28:7751239-7751563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
171, 30
               

               
Conread position:
               
242-553
               

               
Cow position:
               
chr28:7503910-7503591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
253-493
               

               
Cow position:
               
chr28:22279152-22279382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
216, 71
               

               
Conread position:
               
255-470
               

               
Cow position:
               
chr28:28903619-28903833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
259-551
               

               
Cow position:
               
chr28:15008214-15007916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
76, 34
               

               
Conread position:
               
260-474
               

               
Cow position:
               
chr28:9928250-9928450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
153, 36
               

               
Conread position:
               
266-504
               

               
Cow position:
               
chr28:25459569-25459325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
105, 53
               

               
Conread position:
               
266-569
               

               
Cow position:
               
chr28:6577684-6577393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
105, 47
               

               
Conread position:
               
267-567
               

               
Cow position:
               
chr28:17316899-17316598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
59, 83
               

               
Conread position:
               
268-551
               

               
Cow position:
               
chr28:7607269-7606982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
102, 38
               

               
Conread position:
               
268-573
               

               
Cow position:
               
chr28:16252823-16253121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
107, 58
               

               
Conread position:
               
269-575
               

               
Cow position:
               
chr28:25424262-25424571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
82, 51
               

               
Conread position:
               
280-484
               

               
Cow position:
               
chr28:19024166-19023957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 49
               

               
Conread position:
               
285-553
               

               
Cow position:
               
chr28:2905603-2905333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
7, 70
               

               
Conread position:
               
287-553
               

               
Cow position:
               
chr28:22170695-22170965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
290-556
               

               
Cow position:
               
chr28:16441390-16441137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
120, 34
               

               
Conread position:
               
293-553
               

               
Cow position:
               
chr28:4880248-4880511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
304-545
               

               
Cow position:
               
chr28:19394624-19394390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
168, 29
               

               
Conread position:
               
304-553
               

               
Cow position:
               
chr28:23840209-23839962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
304-553
               

               
Cow position:
               
chr28:24646544-24646293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
304-567
               

               
Cow position:
               
chr28:4022393-4022120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
307-554
               

               
Cow position:
               
chr28:6861957-6861705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
313-574
               

               
Cow position:
               
chr28:30978271-30978015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
315-553
               

               
Cow position:
               
chr28:18180156-18180384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
317-553
               

               
Cow position:
               
chr28:14151228-14150987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
321-513
               

               
Cow position:
               
chr28:2737818-2738021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
322-569
               

               
Cow position:
               
chr28:10642026-10642281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
17, 217
               

               
Conread position:
               
324-484
               

               
Cow position:
               
chr28:13290146-13290310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
325-532
               

               
Cow position:
               
chr28:23776032-23775817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
53, 26
               

               
Conread position:
               
325-543
               

               
Cow position:
               
chr28:5552954-5553167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 87
               

               
Conread position:
               
325-575
               

               
Cow position:
               
chr28:6051720-6051462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
326-553
               

               
Cow position:
               
chr28:18717139-18717373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
327-531
               

               
Cow position:
               
chr28:5658540-5658326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
327-553
               

               
Cow position:
               
chr28:8348666-8348901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
327-553
               

               
Cow position:
               
chr28:15272277-15272508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
327-567
               

               
Cow position:
               
chr28:3751296-3751057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
328-553
               

               
Cow position:
               
chr28:26784482-26784714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
328-573
               

               
Cow position:
               
chr28:18462627-18462880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 215
               

               
Conread position:
               
329-474
               

               
Cow position:
               
chr28:118066-118221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
12, 117
               

               
Conread position:
               
329-553
               

               
Cow position:
               
chr28:5805498-5805278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 46
               

               
Conread position:
               
329-568
               

               
Cow position:
               
chr28:5773620-5773381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
43, 194
               

               
Conread position:
               
329-575
               

               
Cow position:
               
chr28:17029733-17029983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
9, 132
               

               
Conread position:
               
330-553
               

               
Cow position:
               
chr28:13356593-13356832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 158
               

               
Conread position:
               
330-553
               

               
Cow position:
               
chr28:14234946-14234727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
139, 90
               

               
Conread position:
               
330-553
               

               
Cow position:
               
chr28:34150542-34150778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 215
               

               
Conread position:
               
331-532
               

               
Cow position:
               
chr28:7980441-7980647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
331-548
               

               
Cow position:
               
chr28:7590199-7590424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
39, 201
               

               
Conread position:
               
331-553
               

               
Cow position:
               
chr28:15374841-15375073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
331-575
               

               
Cow position:
               
chr28:12048723-12048967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
332-570
               

               
Cow position:
               
chr28:11827469-11827233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 43
               

               
Conread position:
               
332-575
               

               
Cow position:
               
chr28:31971773-31972014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
7, 144
               

               
Conread position:
               
333-532
               

               
Cow position:
               
chr28:8656762-8656964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 8
               

               
Conread position:
               
334-553
               

               
Cow position:
               
chr28:9390386-9390612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
334-553
               

               
Cow position:
               
chr28:19295381-19295610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
334-553
               

               
Cow position:
               
chr28:29455677-29455904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
17, 209
               

               
Conread position:
               
335-553
               

               
Cow position:
               
chr28:19222619-19222844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 207
               

               
Conread position:
               
335-553
               

               
Cow position:
               
chr28:23480279-23480509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 124
               

               
Conread position:
               
335-553
               

               
Cow position:
               
chr28:28590716-28590492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
6, 194
               

               
Conread position:
               
336-547
               

               
Cow position:
               
chr28:10456556-10456763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
336-575
               

               
Cow position:
               
chr28:24996612-24996855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
41, 114
               

               
Conread position:
               
337-569
               

               
Cow position:
               
chr28:10888638-10888401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
339-567
               

               
Cow position:
               
chr28:25763005-25762767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
340-553
               

               
Cow position:
               
chr28:26269302-26269082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
341-553
               

               
Cow position:
               
chr28:17288190-17287977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
30, 91
               

               
Conread position:
               
342-574
               

               
Cow position:
               
chr28:11451493-11451736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
343-547
               

               
Cow position:
               
chr28:4588068-4587859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 160
               

               
Conread position:
               
344-556
               

               
Cow position:
               
chr28:13902000-13902210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 58
               

               
Conread position:
               
349-553
               

               
Cow position:
               
chr28:7328859-7328655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
350-526
               

               
Cow position:
               
chr28:10478380-10478565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
350-553
               

               
Cow position:
               
chr28:29073790-29074001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 194
               

               
Conread position:
               
351-564
               

               
Cow position:
               
chr28:15063379-15063600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 33
               

               
Conread position:
               
352-553
               

               
Cow position:
               
chr28:11759587-11759784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 55
               

               
Conread position:
               
354-553
               

               
Cow position:
               
chr28:16450756-16450942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
362-548
               

               
Cow position:
               
chr28:9294961-9294771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
363-529
               

               
Cow position:
               
chr28:8628836-8629002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 17
               

               
Conread position:
               
367-551
               

               
Cow position:
               
chr28:13371229-13371413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
371-553
               

               
Cow position:
               
chr28:20759982-20760171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 171
               

               
Conread position:
               
382-553
               

               
Cow position:
               
chr28:15688961-15688794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
384-513
               

               
Cow position:
               
chr28:3161146-3161278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
385-574
               

               
Cow position:
               
chr28:8372397-8372203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 156
               

               
Conread position:
               
403-553
               

               
Cow position:
               
chr28:10296095-10295942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 135
               

               
Conread position:
               
406-575
               

               
Cow position:
               
chr28:19133686-19133515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 132
               

               
Conread position:
               
407-557
               

               
Cow position:
               
chr28:25334922-25334769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 131
               

               
Conread position:
               
411-552
               

               
Cow position:
               
chr28:16879380-16879514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 47
               

               
Conread position:
               
414-553
               

               
Cow position:
               
chr28:12938891-12938753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 120
               

               
Conread position:
               
428-553
               

               
Cow position:
               
chr28:1315914-1316039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
32, 107
               
Show alignments to all cow chromosomes.