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Cow genome map

           
Conread name:
           
Pig2-114C12
        

               
Conread position:
               
231-452
               

               
Cow position:
               
chr1:52039573-52039793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
180, 112
               

               
Conread position:
               
231-492
               

               
Cow position:
               
chr1:68817858-68817601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
180, 24
               

               
Conread position:
               
231-493
               

               
Cow position:
               
chr1:43505465-43505725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
232-505
               

               
Cow position:
               
chr1:92197394-92197667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
178, 12
               

               
Conread position:
               
233-465
               

               
Cow position:
               
chr1:53458639-53458871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
177, 22
               

               
Conread position:
               
235-480
               

               
Cow position:
               
chr1:89158185-89157942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
189, 25
               

               
Conread position:
               
235-493
               

               
Cow position:
               
chr1:25383608-25383870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
47, 37
               

               
Conread position:
               
235-493
               

               
Cow position:
               
chr1:81290448-81290705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
207, 24
               

               
Conread position:
               
235-516
               

               
Cow position:
               
chr1:86682617-86682343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
178, 20
               

               
Conread position:
               
244-493
               

               
Cow position:
               
chr1:100450224-100449991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
247-484
               

               
Cow position:
               
chr1:55705297-55705055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
248-493
               

               
Cow position:
               
chr1:12464712-12464464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
254-493
               

               
Cow position:
               
chr1:78091994-78092241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 138
               

               
Conread position:
               
254-493
               

               
Cow position:
               
chr1:102529898-102529652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
255-493
               

               
Cow position:
               
chr1:43352695-43352452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
146, 75
               

               
Conread position:
               
255-493
               

               
Cow position:
               
chr1:70175580-70175340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
256-470
               

               
Cow position:
               
chr1:53397935-53398151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
256-503
               

               
Cow position:
               
chr1:37322032-37321799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
207, 22
               

               
Conread position:
               
257-415
               

               
Cow position:
               
chr1:89349925-89350084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
257-489
               

               
Cow position:
               
chr1:81481421-81481188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
164, 153
               

               
Conread position:
               
257-493
               

               
Cow position:
               
chr1:59518883-59519112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
154, 74
               

               
Conread position:
               
257-494
               

               
Cow position:
               
chr1:22729015-22729256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
257-494
               

               
Cow position:
               
chr1:64302283-64302048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
104, 74
               

               
Conread position:
               
257-510
               

               
Cow position:
               
chr1:42541561-42541809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
257-515
               

               
Cow position:
               
chr1:79003937-79004199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
155, 97
               

               
Conread position:
               
257-516
               

               
Cow position:
               
chr1:197044-196785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
154, 144
               

               
Conread position:
               
258-493
               

               
Cow position:
               
chr1:24542607-24542369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
172, 38
               

               
Conread position:
               
258-517
               

               
Cow position:
               
chr1:16061041-16060783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
142, 18
               

               
Conread position:
               
259-486
               

               
Cow position:
               
chr1:100762040-100762268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 70
               

               
Conread position:
               
259-493
               

               
Cow position:
               
chr1:84811976-84811740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
259-504
               

               
Cow position:
               
chr1:5637097-5636860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
14, 160
               

               
Conread position:
               
260-431
               

               
Cow position:
               
chr1:84255732-84255901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
260-441
               

               
Cow position:
               
chr1:89342022-89341832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
260-461
               

               
Cow position:
               
chr1:22827120-22827315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 159
               

               
Conread position:
               
260-483
               

               
Cow position:
               
chr1:43389083-43388863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
163, 32
               

               
Conread position:
               
260-485
               

               
Cow position:
               
chr1:101714086-101714309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
156, 16
               

               
Conread position:
               
260-486
               

               
Cow position:
               
chr1:83072406-83072636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
11, 19
               

               
Conread position:
               
260-487
               

               
Cow position:
               
chr1:98060018-98060254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
260-489
               

               
Cow position:
               
chr1:1981149-1980913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
144, 216
               

               
Conread position:
               
260-489
               

               
Cow position:
               
chr1:5597244-5597015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
95, 57
               

               
Conread position:
               
260-489
               

               
Cow position:
               
chr1:89158736-89158511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
260-492
               

               
Cow position:
               
chr1:54258531-54258769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
140, 107
               

               
Conread position:
               
260-493
               

               
Cow position:
               
chr1:10942131-10941897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
260-493
               

               
Cow position:
               
chr1:10964255-10964489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
260-493
               

               
Cow position:
               
chr1:48206567-48206339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
151, 64
               

               
Conread position:
               
260-493
               

               
Cow position:
               
chr1:56225432-56225667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
23, 38
               

               
Conread position:
               
260-493
               

               
Cow position:
               
chr1:67654356-67654124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
160, 205
               

               
Conread position:
               
260-493
               

               
Cow position:
               
chr1:91023502-91023267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
260-493
               

               
Cow position:
               
chr1:97833675-97833898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
260-496
               

               
Cow position:
               
chr1:89448863-89449102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
260-503
               

               
Cow position:
               
chr1:78811003-78811249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
161, 36
               

               
Conread position:
               
260-510
               

               
Cow position:
               
chr1:102306177-102305924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
260-512
               

               
Cow position:
               
chr1:61742004-61741742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 73
               

               
Conread position:
               
260-515
               

               
Cow position:
               
chr1:29935421-29935170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
260-515
               

               
Cow position:
               
chr1:81477906-81477641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 245
               

               
Conread position:
               
261-428
               

               
Cow position:
               
chr1:71253587-71253425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
261-431
               

               
Cow position:
               
chr1:47233513-47233344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
261-484
               

               
Cow position:
               
chr1:85771974-85772198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
118, 153
               

               
Conread position:
               
261-485
               

               
Cow position:
               
chr1:62034861-62034642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
261-492
               

               
Cow position:
               
chr1:15547438-15547665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
261-493
               

               
Cow position:
               
chr1:27463099-27463329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
261-493
               

               
Cow position:
               
chr1:35162376-35162606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
261-493
               

               
Cow position:
               
chr1:82513390-82513151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
261-494
               

               
Cow position:
               
chr1:8129002-8128777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
261-494
               

               
Cow position:
               
chr1:56618685-56618454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
164, 96
               

               
Conread position:
               
261-502
               

               
Cow position:
               
chr1:70828868-70829106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 111
               

               
Conread position:
               
261-514
               

               
Cow position:
               
chr1:24133096-24132841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
6, 76
               

               
Conread position:
               
262-470
               

               
Cow position:
               
chr1:13637698-13637487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
262-493
               

               
Cow position:
               
chr1:89388305-89388544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
262-493
               

               
Cow position:
               
chr1:90621544-90621305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 192
               

               
Conread position:
               
262-495
               

               
Cow position:
               
chr1:58754828-58754595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
165, 80
               

               
Conread position:
               
262-502
               

               
Cow position:
               
chr1:67585528-67585761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
262-502
               

               
Cow position:
               
chr1:101860519-101860277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
110, 21
               

               
Conread position:
               
262-503
               

               
Cow position:
               
chr1:41027042-41027283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 10
               

               
Conread position:
               
262-507
               

               
Cow position:
               
chr1:41697026-41697270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
150, 16
               

               
Conread position:
               
262-510
               

               
Cow position:
               
chr1:80584396-80584647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
162, 133
               

               
Conread position:
               
262-511
               

               
Cow position:
               
chr1:46143496-46143248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
262-512
               

               
Cow position:
               
chr1:54206849-54206599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 71
               

               
Conread position:
               
262-515
               

               
Cow position:
               
chr1:79630936-79630696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
149, 54
               

               
Conread position:
               
262-516
               

               
Cow position:
               
chr1:96305005-96304750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
263-493
               

               
Cow position:
               
chr1:61884880-61885113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
263-495
               

               
Cow position:
               
chr1:62519332-62519569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
143, 40
               

               
Conread position:
               
263-507
               

               
Cow position:
               
chr1:73960672-73960899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
263-514
               

               
Cow position:
               
chr1:78838763-78839011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
265-493
               

               
Cow position:
               
chr1:6731150-6731380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
135, 31
               

               
Conread position:
               
265-510
               

               
Cow position:
               
chr1:45019833-45019591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
9, 169
               

               
Conread position:
               
266-429
               

               
Cow position:
               
chr1:67688613-67688451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 95
               

               
Conread position:
               
266-431
               

               
Cow position:
               
chr1:77232608-77232444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
266-431
               

               
Cow position:
               
chr1:81580147-81580311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
266-489
               

               
Cow position:
               
chr1:88913292-88913517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
151, 18
               

               
Conread position:
               
266-492
               

               
Cow position:
               
chr1:3942245-3942016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
162, 130
               

               
Conread position:
               
266-492
               

               
Cow position:
               
chr1:33331118-33330902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
266-492
               

               
Cow position:
               
chr1:79146846-79146614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
144, 27
               

               
Conread position:
               
266-493
               

               
Cow position:
               
chr1:22192739-22192971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
266-494
               

               
Cow position:
               
chr1:3923830-3923602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
154, 169
               

               
Conread position:
               
266-501
               

               
Cow position:
               
chr1:49980680-49980917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
151, 86
               

               
Conread position:
               
266-508
               

               
Cow position:
               
chr1:57575794-57575549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
144, 232
               

               
Conread position:
               
266-510
               

               
Cow position:
               
chr1:10778533-10778772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
266-514
               

               
Cow position:
               
chr1:61005593-61005335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
9, 96
               

               
Conread position:
               
266-515
               

               
Cow position:
               
chr1:98911979-98912230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
170, 10
               

               
Conread position:
               
267-493
               

               
Cow position:
               
chr1:93499589-93499820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
267-501
               

               
Cow position:
               
chr1:86057104-86056869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
267-509
               

               
Cow position:
               
chr1:50931002-50930766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
160, 11
               

               
Conread position:
               
267-514
               

               
Cow position:
               
chr1:78857358-78857105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
150, 234
               

               
Conread position:
               
267-515
               

               
Cow position:
               
chr1:23998962-23998701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
134, 11
               

               
Conread position:
               
267-517
               

               
Cow position:
               
chr1:82936625-82936381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
268-493
               

               
Cow position:
               
chr1:64572487-64572715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
268-494
               

               
Cow position:
               
chr1:8287659-8287428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 123
               

               
Conread position:
               
268-495
               

               
Cow position:
               
chr1:33998731-33998952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
268-503
               

               
Cow position:
               
chr1:49825093-49824855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
268-505
               

               
Cow position:
               
chr1:30983518-30983279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 10
               

               
Conread position:
               
268-514
               

               
Cow position:
               
chr1:101507332-101507570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
268-515
               

               
Cow position:
               
chr1:22730708-22730956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
152, 10
               

               
Conread position:
               
268-515
               

               
Cow position:
               
chr1:35671514-35671758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
268-515
               

               
Cow position:
               
chr1:55229949-55230196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
155, 10
               

               
Conread position:
               
268-516
               

               
Cow position:
               
chr1:86110763-86110523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
147, 10
               

               
Conread position:
               
268-517
               

               
Cow position:
               
chr1:78096899-78097151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
269-431
               

               
Cow position:
               
chr1:80841620-80841780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
269-431
               

               
Cow position:
               
chr1:81613362-81613522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
269-484
               

               
Cow position:
               
chr1:83025189-83024973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
120, 9
               

               
Conread position:
               
269-486
               

               
Cow position:
               
chr1:54267964-54267746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
159, 63
               

               
Conread position:
               
269-493
               

               
Cow position:
               
chr1:100852684-100852903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
142, 13
               

               
Conread position:
               
269-494
               

               
Cow position:
               
chr1:78794259-78794034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 149
               

               
Conread position:
               
269-510
               

               
Cow position:
               
chr1:95558010-95558256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
130, 120
               

               
Conread position:
               
269-512
               

               
Cow position:
               
chr1:65318548-65318794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
148, 121
               

               
Conread position:
               
270-484
               

               
Cow position:
               
chr1:71078987-71078770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
270-493
               

               
Cow position:
               
chr1:45575909-45576121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
270-493
               

               
Cow position:
               
chr1:81569052-81568828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
141, 8
               

               
Conread position:
               
270-493
               

               
Cow position:
               
chr1:98583724-98583949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
270-510
               

               
Cow position:
               
chr1:53622932-53623173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
147, 60
               

               
Conread position:
               
270-516
               

               
Cow position:
               
chr1:54156760-54156510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
135, 76
               

               
Conread position:
               
271-452
               

               
Cow position:
               
chr1:19962029-19962209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
149, 7
               

               
Conread position:
               
271-493
               

               
Cow position:
               
chr1:42887302-42887079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
271-507
               

               
Cow position:
               
chr1:97090302-97090531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
230, 7
               

               
Conread position:
               
272-455
               

               
Cow position:
               
chr1:3965812-3965999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
139, 71
               

               
Conread position:
               
272-482
               

               
Cow position:
               
chr1:98030899-98031105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
272-485
               

               
Cow position:
               
chr1:62964243-62964461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
15, 6
               

               
Conread position:
               
272-493
               

               
Cow position:
               
chr1:20104242-20104467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
272-493
               

               
Cow position:
               
chr1:75744838-75745061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
272-494
               

               
Cow position:
               
chr1:27959574-27959345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
272-494
               

               
Cow position:
               
chr1:71295320-71295102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
43, 143
               

               
Conread position:
               
272-515
               

               
Cow position:
               
chr1:67919110-67919351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
7, 137
               

               
Conread position:
               
273-492
               

               
Cow position:
               
chr1:79640311-79640089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
155, 144
               

               
Conread position:
               
273-496
               

               
Cow position:
               
chr1:95618620-95618845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
147, 5
               

               
Conread position:
               
273-503
               

               
Cow position:
               
chr1:78066559-78066332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
273-515
               

               
Cow position:
               
chr1:90904778-90904534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
155, 19
               

               
Conread position:
               
273-517
               

               
Cow position:
               
chr1:70538588-70538831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
274-516
               

               
Cow position:
               
chr1:42175700-42175951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 26
               

               
Conread position:
               
275-510
               

               
Cow position:
               
chr1:20667763-20667532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
275-516
               

               
Cow position:
               
chr1:24530481-24530722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
145, 28
               

               
Conread position:
               
278-469
               

               
Cow position:
               
chr1:87197802-87197997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
278-485
               

               
Cow position:
               
chr1:64113809-64113607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
103, 130
               

               
Conread position:
               
278-493
               

               
Cow position:
               
chr1:10633028-10633241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
278-493
               

               
Cow position:
               
chr1:55753233-55753018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
139, 39
               

               
Conread position:
               
278-516
               

               
Cow position:
               
chr1:53452519-53452744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
278-517
               

               
Cow position:
               
chr1:82880628-82880855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
279-492
               

               
Cow position:
               
chr1:41056661-41056879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
279-493
               

               
Cow position:
               
chr1:5751296-5751516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
122, 110
               

               
Conread position:
               
279-493
               

               
Cow position:
               
chr1:26934286-26934067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
155, 22
               

               
Conread position:
               
279-493
               

               
Cow position:
               
chr1:52912913-52912691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
132, 13
               

               
Conread position:
               
279-494
               

               
Cow position:
               
chr1:97954485-97954281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
280-482
               

               
Cow position:
               
chr1:89509937-89509738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
280-493
               

               
Cow position:
               
chr1:45315652-45315430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
280-514
               

               
Cow position:
               
chr1:68855149-68855388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
6, 17
               

               
Conread position:
               
282-496
               

               
Cow position:
               
chr1:759432-759208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
283-483
               

               
Cow position:
               
chr1:17196639-17196434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
133, 9
               

               
Conread position:
               
286-521
               

               
Cow position:
               
chr1:32014188-32014420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
289-494
               

               
Cow position:
               
chr1:99605194-99604990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
135, 185
               

               
Conread position:
               
290-517
               

               
Cow position:
               
chr1:40212338-40212127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
173, 62
               

               
Conread position:
               
291-484
               

               
Cow position:
               
chr1:89381270-89381466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
137, 119
               

               
Conread position:
               
291-491
               

               
Cow position:
               
chr1:66752634-66752433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
291-493
               

               
Cow position:
               
chr1:51860566-51860363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 99
               

               
Conread position:
               
291-496
               

               
Cow position:
               
chr1:97540630-97540843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
88, 101
               

               
Conread position:
               
291-503
               

               
Cow position:
               
chr1:61011176-61011388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
196, 120
               

               
Conread position:
               
291-506
               

               
Cow position:
               
chr1:8610-8832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
291-509
               

               
Cow position:
               
chr1:45555361-45555580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
143, 104
               

               
Conread position:
               
291-509
               

               
Cow position:
               
chr1:101280739-101280523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
120, 36
               

               
Conread position:
               
291-510
               

               
Cow position:
               
chr1:68688578-68688797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
127, 141
               

               
Conread position:
               
291-511
               

               
Cow position:
               
chr1:100573633-100573411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
10, 210
               

               
Conread position:
               
291-514
               

               
Cow position:
               
chr1:93590591-93590368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
120, 175
               

               
Conread position:
               
291-515
               

               
Cow position:
               
chr1:95835803-95835571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
110, 99
               

               
Conread position:
               
292-493
               

               
Cow position:
               
chr1:34159830-34160029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
9, 127
               

               
Conread position:
               
292-496
               

               
Cow position:
               
chr1:101439486-101439285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
293-512
               

               
Cow position:
               
chr1:95156967-95156746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
124, 199
               

               
Conread position:
               
294-493
               

               
Cow position:
               
chr1:7965851-7966048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
123, 38
               

               
Conread position:
               
294-506
               

               
Cow position:
               
chr1:48618247-48618033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
295-507
               

               
Cow position:
               
chr1:41138145-41137934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
199, 0
               

               
Conread position:
               
300-489
               

               
Cow position:
               
chr1:42774915-42775103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
127, 16
               

               
Conread position:
               
300-494
               

               
Cow position:
               
chr1:30948996-30949184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
301-488
               

               
Cow position:
               
chr1:71636320-71636132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
302-493
               

               
Cow position:
               
chr1:71946078-71945879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
118, 168
               

               
Conread position:
               
302-515
               

               
Cow position:
               
chr1:70483328-70483115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
108, 195
               

               
Conread position:
               
305-493
               

               
Cow position:
               
chr1:524817-525007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
305-517
               

               
Cow position:
               
chr1:55685969-55685753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
106, 193
               

               
Conread position:
               
306-511
               

               
Cow position:
               
chr1:50585868-50585660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
38, 196
               

               
Conread position:
               
308-512
               

               
Cow position:
               
chr1:82537942-82538147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
309-492
               

               
Cow position:
               
chr1:85339400-85339577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
310-489
               

               
Cow position:
               
chr1:29671210-29671023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 167
               

               
Conread position:
               
310-517
               

               
Cow position:
               
chr1:70416746-70416534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
311-488
               

               
Cow position:
               
chr1:102730747-102730561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
313-493
               

               
Cow position:
               
chr1:67674587-67674407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
316-509
               

               
Cow position:
               
chr1:53651007-53651196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
95, 49
               

               
Conread position:
               
317-516
               

               
Cow position:
               
chr1:11708997-11708800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
99, 75
               

               
Conread position:
               
318-493
               

               
Cow position:
               
chr1:102523619-102523439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
92, 140
               

               
Conread position:
               
318-513
               

               
Cow position:
               
chr1:62469083-62469279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
112, 25
               

               
Conread position:
               
318-515
               

               
Cow position:
               
chr1:69378577-69378376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
101, 78
               

               
Conread position:
               
318-515
               

               
Cow position:
               
chr1:91743437-91743240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 23
               

               
Conread position:
               
321-493
               

               
Cow position:
               
chr1:89835742-89835911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
324-492
               

               
Cow position:
               
chr1:64811264-64811437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
324-492
               

               
Cow position:
               
chr1:100800741-100800569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
324-493
               

               
Cow position:
               
chr1:98742050-98742217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
87, 25
               

               
Conread position:
               
324-522
               

               
Cow position:
               
chr1:627994-628196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
77, 71
               

               
Conread position:
               
325-485
               

               
Cow position:
               
chr1:1799060-1799225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
329-494
               

               
Cow position:
               
chr1:46354406-46354238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
97, 82
               

               
Conread position:
               
336-493
               

               
Cow position:
               
chr1:77810719-77810562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 135
               

               
Conread position:
               
336-496
               

               
Cow position:
               
chr1:92363623-92363466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
336-512
               

               
Cow position:
               
chr1:19384416-19384237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
337-493
               

               
Cow position:
               
chr1:41022460-41022617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
64, 53
               

               
Conread position:
               
338-494
               

               
Cow position:
               
chr1:30028190-30028030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
338-510
               

               
Cow position:
               
chr1:84787312-84787478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
341-493
               

               
Cow position:
               
chr1:4329858-4329708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
73, 87
               

               
Conread position:
               
341-494
               

               
Cow position:
               
chr1:2523008-2523166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
344-491
               

               
Cow position:
               
chr1:23101723-23101874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
357-514
               

               
Cow position:
               
chr1:32674892-32675041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
357-516
               

               
Cow position:
               
chr1:50906619-50906457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 60
               

               
Conread position:
               
362-493
               

               
Cow position:
               
chr1:10470492-10470623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
362-493
               

               
Cow position:
               
chr1:53474222-53474349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
362-493
               

               
Cow position:
               
chr1:80423666-80423531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
362-494
               

               
Cow position:
               
chr1:70476685-70476551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 34
               

               
Conread position:
               
362-508
               

               
Cow position:
               
chr1:77099058-77098911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
362-520
               

               
Cow position:
               
chr1:73644441-73644283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 135
               

               
Conread position:
               
363-504
               

               
Cow position:
               
chr1:92578766-92578622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
363-520
               

               
Cow position:
               
chr1:95976400-95976563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
364-493
               

               
Cow position:
               
chr1:45233059-45233184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
364-517
               

               
Cow position:
               
chr1:39095556-39095707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 112
               

               
Conread position:
               
366-522
               

               
Cow position:
               
chr1:97755573-97755733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
384-513
               

               
Cow position:
               
chr1:66242030-66241901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 111
               

               
Conread position:
               
396-515
               

               
Cow position:
               
chr1:102611627-102611744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
396-519
               

               
Cow position:
               
chr1:45262618-45262490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               
Show alignments to all cow chromosomes.