Cow genome map
| Conread name: | Pig2-117P05 |
| Conread position: | 1-426 |
| Cow position: | chr12:15950790-15951212 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 23 |
| Conread position: | 123-407 |
| Cow position: | chr12:21500451-21500175 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 253, 64 |
| Conread position: | 142-411 |
| Cow position: | chr12:3631935-3632200 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 146-429 |
| Cow position: | chr12:48405577-48405316 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 86 |
| Conread position: | 154-424 |
| Cow position: | chr12:18501347-18501093 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 93, 29 |
| Conread position: | 178-426 |
| Cow position: | chr12:2838564-2838806 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 115, 56 |
| Conread position: | 189-430 |
| Cow position: | chr12:5861439-5861198 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 104, 57 |
| Conread position: | 195-426 |
| Cow position: | chr12:21942050-21941813 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 127 |
| Conread position: | 198-426 |
| Cow position: | chr12:28765738-28765971 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 211-429 |
| Cow position: | chr12:32653812-32653589 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 211-429 |
| Cow position: | chr12:37558824-37558600 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 212-426 |
| Cow position: | chr12:2282809-2282594 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 212-426 |
| Cow position: | chr12:14662370-14662585 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 212-426 |
| Cow position: | chr12:21198223-21198006 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 212-428 |
| Cow position: | chr12:8311444-8311227 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 212-429 |
| Cow position: | chr12:21902202-21901985 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 72, 58 |
| Conread position: | 212-429 |
| Cow position: | chr12:22332887-22332670 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 81, 155 |
| Conread position: | 212-429 |
| Cow position: | chr12:45261886-45261661 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 81, 205 |
| Conread position: | 213-426 |
| Cow position: | chr12:251794-252008 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 213-429 |
| Cow position: | chr12:33986424-33986207 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 218-429 |
| Cow position: | chr12:3056-2844 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 69, 21 |
| Conread position: | 219-409 |
| Cow position: | chr12:23240260-23240069 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 101 |
| Conread position: | 219-429 |
| Cow position: | chr12:21254399-21254611 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 225-392 |
| Cow position: | chr12:20997883-20998050 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 142, 158 |
| Conread position: | 226-424 |
| Cow position: | chr12:1402739-1402541 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 226-426 |
| Cow position: | chr12:6406402-6406600 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 226-426 |
| Cow position: | chr12:11098491-11098290 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 226-426 |
| Cow position: | chr12:27932696-27932897 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 226-429 |
| Cow position: | chr12:21426943-21426739 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 12 |
| Conread position: | 226-429 |
| Cow position: | chr12:43031136-43031338 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 236-426 |
| Cow position: | chr12:22205508-22205698 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 236-429 |
| Cow position: | chr12:3361143-3360949 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 237-426 |
| Cow position: | chr12:8677883-8678074 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 239-426 |
| Cow position: | chr12:25100825-25101013 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 239-426 |
| Cow position: | chr12:42859591-42859779 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 242-429 |
| Cow position: | chr12:26946750-26946947 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 8, 39 |
| Conread position: | 403-560 |
| Cow position: | chr12:26141829-26141668 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 403-560 |
| Cow position: | chr12:27932930-27933091 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 403-561 |
| Cow position: | chr12:22205731-22205893 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 404-567 |
| Cow position: | chr12:21426708-21426541 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 404-567 |
| Cow position: | chr12:43031369-43031535 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 421-560 |
| Cow position: | chr12:37558553-37558409 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 421-561 |
| Cow position: | chr12:6406650-6406792 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 421-561 |
| Cow position: | chr12:8678124-8678269 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 421-561 |
| Cow position: | chr12:11098240-11098095 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 421-561 |
| Cow position: | chr12:25101063-25101208 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 421-562 |
| Cow position: | chr12:28766021-28766165 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 421-569 |
| Cow position: | chr12:20998124-20998274 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 422-554 |
| Cow position: | chr12:21254658-21254793 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 93 |
| Conread position: | 426-562 |
| Cow position: | chr12:2792-2651 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 89 |
| Conread position: | 426-562 |
| Cow position: | chr12:8311179-8311038 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 426-562 |
| Cow position: | chr12:21901933-21901799 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 426-562 |
| Cow position: | chr12:22332613-22332474 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 426-562 |
| Cow position: | chr12:45261609-45261467 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 74, 90 |
| Conread position: | 426-563 |
| Cow position: | chr12:2282539-2282398 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 430-562 |
| Cow position: | chr12:48405033-48404898 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 77 |
Show alignments to all cow chromosomes.