Cow genome map

Conread name: Pig2-117P05

Conread position: 1-217
Cow position: chr13:26844039-26843825 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 46, 69

Conread position: 1-426
Cow position: chr13:20542118-20542546 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 23

Conread position: 1-426
Cow position: chr13:54284831-54284401 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 23

Conread position: 5-562
Cow position: chr13:15451305-15451853 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 19

Conread position: 130-385
Cow position: chr13:34111407-34111163 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 66, 178

Conread position: 130-426
Cow position: chr13:34767175-34767456 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 217
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 76, 40

Conread position: 142-425
Cow position: chr13:30064224-30063955 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 195
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 88, 11

Conread position: 153-426
Cow position: chr13:34937248-34936974 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 34

Conread position: 170-429
Cow position: chr13:35030635-35030380 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 50, 17

Conread position: 183-377
Cow position: chr13:3654261-3654449 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 22

Conread position: 185-403
Cow position: chr13:46732161-46732376 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 60, 41

Conread position: 191-426
Cow position: chr13:34186625-34186858 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 14, 26

Conread position: 191-426
Cow position: chr13:34325612-34325847 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 37, 7

Conread position: 191-429
Cow position: chr13:34142594-34142835 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 28, 0

Conread position: 191-429
Cow position: chr13:49973753-49973508 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 17, 53

Conread position: 192-429
Cow position: chr13:4873141-4872901 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 49

Conread position: 192-429
Cow position: chr13:13324817-13324573 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 17, 52

Conread position: 208-423
Cow position: chr13:3058061-3058281 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 170
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 9, 33

Conread position: 208-426
Cow position: chr13:31561233-31561015 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 151
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 24, 30

Conread position: 209-429
Cow position: chr13:21840146-21840370 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 8, 32

Conread position: 211-426
Cow position: chr13:15520472-15520688 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 82, 0

Conread position: 211-429
Cow position: chr13:31734038-31734257 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 9, 142

Conread position: 212-333
Cow position: chr13:33927545-33927667 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 81, 0

Conread position: 212-426
Cow position: chr13:3277196-3276981 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 81, 0

Conread position: 212-426
Cow position: chr13:31612294-31612508 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 131, 83

Conread position: 212-429
Cow position: chr13:30656935-30657150 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 119, 0

Conread position: 212-429
Cow position: chr13:33824693-33824907 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 81, 118

Conread position: 212-429
Cow position: chr13:34693207-34692987 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 81, 0

Conread position: 212-429
Cow position: chr13:56730245-56730461 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 168
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 80, 63

Conread position: 212-429
Cow position: chr13:62327540-62327760 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 213-426
Cow position: chr13:16343177-16343384 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 9

Conread position: 214-387
Cow position: chr13:34868783-34868606 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 13, 82

Conread position: 215-429
Cow position: chr13:31832636-31832424 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 78, 17

Conread position: 218-445
Cow position: chr13:34911343-34911571 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 75, 104

Conread position: 225-384
Cow position: chr13:3567823-3567663 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 68, 0

Conread position: 225-429
Cow position: chr13:4178622-4178827 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 68, 0

Conread position: 226-378
Cow position: chr13:676904-676751 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 6, 12

Conread position: 226-425
Cow position: chr13:60466365-60466165 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 6, 12

Conread position: 226-426
Cow position: chr13:1593127-1593328 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 67, 0

Conread position: 226-426
Cow position: chr13:4941116-4940915 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 67, 0

Conread position: 226-426
Cow position: chr13:9044528-9044328 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 67, 47

Conread position: 226-426
Cow position: chr13:15924356-15924557 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 67, 0

Conread position: 226-429
Cow position: chr13:2388790-2388994 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 12

Conread position: 226-429
Cow position: chr13:17308503-17308299 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 159
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 6, 12

Conread position: 226-429
Cow position: chr13:32986029-32986233 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 163
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 6, 12

Conread position: 226-429
Cow position: chr13:50109490-50109286 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 6, 12

Conread position: 230-426
Cow position: chr13:4483817-4483624 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 63, 9

Conread position: 235-426
Cow position: chr13:33336320-33336515 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 32

Conread position: 235-429
Cow position: chr13:2908430-2908626 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 45, 0

Conread position: 237-426
Cow position: chr13:34042352-34042541 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 56, 172

Conread position: 237-427
Cow position: chr13:6668106-6668297 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 56, 0

Conread position: 239-426
Cow position: chr13:35757256-35757068 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 147
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 54, 0

Conread position: 244-424
Cow position: chr13:32737812-32737992 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 44, 165

Conread position: 244-429
Cow position: chr13:47229977-47230163 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 147
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 49, 0

Conread position: 254-426
Cow position: chr13:23003518-23003688 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 293-562
Cow position: chr13:30238078-30237807 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 166

Conread position: 301-425
Cow position: chr13:30244781-30244905 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 403-561
Cow position: chr13:9044295-9044142 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 126, 18

Conread position: 403-561
Cow position: chr13:15924590-15924750 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 48, 19

Conread position: 403-561
Cow position: chr13:32738026-32738188 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 48, 18

Conread position: 403-561
Cow position: chr13:35757035-35756873 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 53, 18

Conread position: 403-566
Cow position: chr13:34042574-34042737 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 126, 18

Conread position: 403-567
Cow position: chr13:49973477-49973309 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 49, 30

Conread position: 404-529
Cow position: chr13:2389025-2389154 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 48, 17

Conread position: 404-560
Cow position: chr13:30244940-30245100 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 53, 17

Conread position: 404-561
Cow position: chr13:32544734-32544573 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 17

Conread position: 404-567
Cow position: chr13:31734288-31734454 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 17

Conread position: 404-567
Cow position: chr13:50109255-50109090 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 53, 17

Conread position: 420-562
Cow position: chr13:34911600-34911737 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 24

Conread position: 421-554
Cow position: chr13:3567560-3567426 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 94

Conread position: 421-561
Cow position: chr13:23003738-23003882 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 30, 94

Conread position: 421-561
Cow position: chr13:31612558-31612703 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 30, 94

Conread position: 421-561
Cow position: chr13:33927791-33927930 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 108, 32

Conread position: 421-562
Cow position: chr13:20542593-20542734 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 134, 75

Conread position: 421-562
Cow position: chr13:33824954-33825098 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 108, 92

Conread position: 421-562
Cow position: chr13:34325898-34326046 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 120
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 421-562
Cow position: chr13:35030319-35030179 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 82, 32

Conread position: 421-562
Cow position: chr13:54284355-54284214 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 134, 32

Conread position: 421-567
Cow position: chr13:4872854-4872703 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 31, 94

Conread position: 421-568
Cow position: chr13:34868550-34868400 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 127
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 31, 94

Conread position: 423-562
Cow position: chr13:34186912-34187056 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 34, 92

Conread position: 425-562
Cow position: chr13:3276931-3276789 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 28, 90

Conread position: 426-562
Cow position: chr13:2232432-2232291 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 89

Conread position: 426-562
Cow position: chr13:2908678-2908817 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 89

Conread position: 426-562
Cow position: chr13:62327812-62327950 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 61

Conread position: 426-567
Cow position: chr13:17308247-17308101 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 120
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 26, 89

Conread position: 427-562
Cow position: chr13:34692934-34692794 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 118
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 25, 88

Conread position: 428-562
Cow position: chr13:31832370-31832233 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 95

Conread position: 428-562
Cow position: chr13:56730513-56730650 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 116
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 25, 87

Show alignments to all cow chromosomes.