Cow genome map

Conread name: Pig2-117P05

Conread position: 1-427
Cow position: chr18:54171292-54171718 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 40

Conread position: 5-423
Cow position: chr18:29237384-29236955 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 29

Conread position: 44-377
Cow position: chr18:56462370-56462711 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 190

Conread position: 85-426
Cow position: chr18:54270063-54269727 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 234
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 31, 153

Conread position: 123-400
Cow position: chr18:29763811-29763539 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 112

Conread position: 123-426
Cow position: chr18:2886573-2886878 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 228

Conread position: 123-426
Cow position: chr18:16842893-16843195 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 138

Conread position: 130-424
Cow position: chr18:37599103-37599397 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 16

Conread position: 142-392
Cow position: chr18:16877890-16877647 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 150, 21

Conread position: 161-347
Cow position: chr18:51629845-51629663 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 47

Conread position: 187-418
Cow position: chr18:16176235-16176463 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 108, 79

Conread position: 190-567
Cow position: chr18:51660739-51660359 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 343, 323

Conread position: 191-426
Cow position: chr18:27987442-27987203 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 74, 54

Conread position: 191-426
Cow position: chr18:53786218-53785982 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 10, 71

Conread position: 191-429
Cow position: chr18:1521525-1521268 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 21, 0

Conread position: 192-426
Cow position: chr18:51462695-51462935 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 181
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 17, 52

Conread position: 192-429
Cow position: chr18:11274722-11274966 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 17, 54

Conread position: 192-429
Cow position: chr18:16079099-16078857 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 0

Conread position: 197-429
Cow position: chr18:51258356-51258123 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 205-429
Cow position: chr18:39748942-39748718 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 88, 57

Conread position: 211-429
Cow position: chr18:51310942-51310725 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 82, 47

Conread position: 211-429
Cow position: chr18:51342049-51341826 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 9, 31

Conread position: 212-372
Cow position: chr18:54044365-54044524 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 125, 135

Conread position: 212-411
Cow position: chr18:17992063-17992263 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 158
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 81, 0

Conread position: 212-427
Cow position: chr18:32294116-32293909 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 162, 52

Conread position: 212-429
Cow position: chr18:6868901-6869119 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 212-429
Cow position: chr18:19539227-19539440 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 81, 63

Conread position: 212-429
Cow position: chr18:23944015-23944235 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 171
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 0

Conread position: 212-429
Cow position: chr18:33269183-33268965 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 81, 0

Conread position: 212-429
Cow position: chr18:47719226-47719444 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 212-429
Cow position: chr18:48222236-48222019 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 98

Conread position: 212-430
Cow position: chr18:16534338-16534117 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 171
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 8, 0

Conread position: 213-429
Cow position: chr18:22602844-22602627 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 80, 0

Conread position: 213-429
Cow position: chr18:33953218-33953429 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 82, 0

Conread position: 213-429
Cow position: chr18:51689981-51689764 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 80, 0

Conread position: 214-426
Cow position: chr18:14130741-14130527 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 31, 0

Conread position: 218-423
Cow position: chr18:33336214-33336013 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 86, 143

Conread position: 218-429
Cow position: chr18:2019335-2019546 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 167
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 75, 32

Conread position: 218-429
Cow position: chr18:35335831-35335619 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 219-429
Cow position: chr18:33359217-33359007 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 7, 151

Conread position: 219-429
Cow position: chr18:43146574-43146786 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 7, 0

Conread position: 226-424
Cow position: chr18:51481183-51480984 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 69, 0

Conread position: 226-426
Cow position: chr18:27837973-27838173 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 58

Conread position: 226-426
Cow position: chr18:28973559-28973760 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 67, 0

Conread position: 226-426
Cow position: chr18:36508676-36508475 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 67, 0

Conread position: 226-426
Cow position: chr18:41840481-41840682 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 67, 0

Conread position: 226-429
Cow position: chr18:24040388-24040593 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 6, 12

Conread position: 226-429
Cow position: chr18:47742362-47742158 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 6, 12

Conread position: 226-429
Cow position: chr18:54003864-54003656 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 141, 47

Conread position: 226-429
Cow position: chr18:55088581-55088785 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 6, 12

Conread position: 236-426
Cow position: chr18:23797982-23797790 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 150
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 9, 0

Conread position: 236-426
Cow position: chr18:40478717-40478526 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 147
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 9, 0

Conread position: 236-429
Cow position: chr18:19352719-19352525 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 57, 0

Conread position: 237-426
Cow position: chr18:14416308-14416119 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 149
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 237-426
Cow position: chr18:37505396-37505206 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 142, 0

Conread position: 237-426
Cow position: chr18:52651252-52651063 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 56, 132

Conread position: 248-429
Cow position: chr18:114711-114531 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 89

Conread position: 251-546
Cow position: chr18:45959035-45958741 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 129
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 42, 30

Conread position: 267-426
Cow position: chr18:18089173-18089330 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 286-426
Cow position: chr18:54024077-54024217 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 292-426
Cow position: chr18:32652496-32652362 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 301-426
Cow position: chr18:25350933-25350808 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 403-560
Cow position: chr18:14416086-14415925 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 18

Conread position: 403-560
Cow position: chr18:22602597-22602436 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 49, 18

Conread position: 403-561
Cow position: chr18:23797757-23797597 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 48, 18

Conread position: 403-561
Cow position: chr18:28973793-28973955 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 48, 18

Conread position: 403-561
Cow position: chr18:36508443-36508281 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 48, 18

Conread position: 403-561
Cow position: chr18:51480949-51480785 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 18

Conread position: 403-562
Cow position: chr18:33335977-33335815 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 46, 19

Conread position: 403-569
Cow position: chr18:51689734-51689567 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 126, 18

Conread position: 404-567
Cow position: chr18:11274997-11275164 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 17

Conread position: 404-567
Cow position: chr18:19352494-19352328 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 17

Conread position: 404-567
Cow position: chr18:33953460-33953625 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 17

Conread position: 404-567
Cow position: chr18:47742127-47741960 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 17

Conread position: 404-567
Cow position: chr18:51341795-51341628 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 48, 17

Conread position: 421-556
Cow position: chr18:51258070-51257932 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 114
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 38, 94

Conread position: 421-561
Cow position: chr18:14130477-14130337 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 111, 38

Conread position: 421-562
Cow position: chr18:23944282-23944424 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 121
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 32, 67

Conread position: 421-562
Cow position: chr18:54171753-54171896 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 32, 93

Conread position: 421-564
Cow position: chr18:6869166-6869313 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 111, 92

Conread position: 421-567
Cow position: chr18:44621852-44621701 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 125
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 84

Conread position: 421-567
Cow position: chr18:55088832-55088983 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 36, 94

Conread position: 422-560
Cow position: chr18:16659913-16660056 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 93

Conread position: 422-562
Cow position: chr18:54024267-54024403 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 38, 93

Conread position: 423-562
Cow position: chr18:48221968-48221824 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 92

Conread position: 425-562
Cow position: chr18:2886932-2887074 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 90

Conread position: 426-554
Cow position: chr18:47719496-47719626 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 89

Conread position: 426-561
Cow position: chr18:43146838-43146976 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 117
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 27, 89

Conread position: 426-562
Cow position: chr18:17992477-17992615 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 103, 79

Conread position: 426-562
Cow position: chr18:32293856-32293722 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 78

Conread position: 426-562
Cow position: chr18:33358955-33358814 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 23, 89

Conread position: 426-562
Cow position: chr18:39748666-39748525 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 91

Conread position: 426-562
Cow position: chr18:43201141-43201010 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 25, 0

Conread position: 426-562
Cow position: chr18:53785924-53785786 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 23, 45

Conread position: 426-562
Cow position: chr18:54044615-54044754 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 118
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 31, 89

Conread position: 427-554
Cow position: chr18:16534065-16533936 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 32, 44

Conread position: 427-561
Cow position: chr18:51310666-51310530 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 87

Conread position: 427-562
Cow position: chr18:2019599-2019739 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 88

Conread position: 427-562
Cow position: chr18:29236898-29236764 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 87

Show alignments to all cow chromosomes.