Cow genome map
| Conread name: | Pig2-117P05 |
| Conread position: | 1-241 |
| Cow position: | chr19:44532699-44532445 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 46, 38 |
| Conread position: | 1-241 |
| Cow position: | chr19:47610161-47610414 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 1-277 |
| Cow position: | chr19:136777-137059 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 46, 23 |
| Conread position: | 1-285 |
| Cow position: | chr19:263385-263092 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 104, 23 |
| Conread position: | 2-426 |
| Cow position: | chr19:352401-352846 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 5-356 |
| Cow position: | chr19:43260-42902 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 26-426 |
| Cow position: | chr19:377351-377757 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 112 |
| Conread position: | 29-348 |
| Cow position: | chr19:27052302-27052623 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 75 |
| Conread position: | 44-397 |
| Cow position: | chr19:162884-163246 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 16, 164 |
| Conread position: | 83-426 |
| Cow position: | chr19:42648626-42648965 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 110-419 |
| Cow position: | chr19:32222984-32223293 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 110 |
| Conread position: | 110-426 |
| Cow position: | chr19:35377242-35376934 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 182, 62 |
| Conread position: | 117-426 |
| Cow position: | chr19:30755629-30755328 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 13, 131 |
| Conread position: | 123-426 |
| Cow position: | chr19:15954285-15954000 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 57, 105 |
| Conread position: | 126-426 |
| Cow position: | chr19:42249253-42248953 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 48, 135 |
| Conread position: | 136-331 |
| Cow position: | chr19:27037514-27037709 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 83 |
| Conread position: | 146-430 |
| Cow position: | chr19:32203168-32202889 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 85 |
| Conread position: | 163-426 |
| Cow position: | chr19:6554006-6553749 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 15, 61 |
| Conread position: | 191-426 |
| Cow position: | chr19:39390891-39390655 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 192-426 |
| Cow position: | chr19:52151442-52151684 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 211-413 |
| Cow position: | chr19:1491375-1491575 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 211-429 |
| Cow position: | chr19:772964-772743 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 211-429 |
| Cow position: | chr19:7342435-7342212 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 212-379 |
| Cow position: | chr19:341583-341416 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 212-408 |
| Cow position: | chr19:29209959-29209764 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 80, 153 |
| Conread position: | 212-418 |
| Cow position: | chr19:28581299-28581504 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 81, 21 |
| Conread position: | 212-426 |
| Cow position: | chr19:39546973-39546774 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 212-429 |
| Cow position: | chr19:417022-416805 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 27 |
| Conread position: | 212-529 |
| Cow position: | chr19:28376848-28376510 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 323 |
| Conread position: | 213-334 |
| Cow position: | chr19:5208533-5208411 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 213-415 |
| Cow position: | chr19:40817341-40817545 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 213-429 |
| Cow position: | chr19:1032436-1032219 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 217-426 |
| Cow position: | chr19:75911-76122 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 219-426 |
| Cow position: | chr19:172566-172358 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 219-426 |
| Cow position: | chr19:10671951-10672159 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 219-429 |
| Cow position: | chr19:32665878-32665674 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 226-401 |
| Cow position: | chr19:5729177-5729000 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 226-419 |
| Cow position: | chr19:4385817-4385634 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 40 |
| Conread position: | 226-426 |
| Cow position: | chr19:38243-38043 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 67, 183 |
| Conread position: | 226-426 |
| Cow position: | chr19:32211725-32211926 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 226-426 |
| Cow position: | chr19:33873774-33873573 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 67, 129 |
| Conread position: | 226-429 |
| Cow position: | chr19:170399-170602 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 6, 19 |
| Conread position: | 226-429 |
| Cow position: | chr19:687411-687209 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 226-429 |
| Cow position: | chr19:43144064-43143860 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 227-415 |
| Cow position: | chr19:439310-439499 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 227-429 |
| Cow position: | chr19:20105060-20104856 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 5, 11 |
| Conread position: | 235-426 |
| Cow position: | chr19:40887316-40887505 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 118 |
| Conread position: | 236-424 |
| Cow position: | chr19:204300-204110 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 237-419 |
| Cow position: | chr19:893278-893461 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 237-426 |
| Cow position: | chr19:7488650-7488460 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 237-426 |
| Cow position: | chr19:40852101-40852291 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 239-425 |
| Cow position: | chr19:2274043-2274230 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 251-398 |
| Cow position: | chr19:439138-439286 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 254-429 |
| Cow position: | chr19:32245004-32244828 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 256-425 |
| Cow position: | chr19:39688845-39688677 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 259-429 |
| Cow position: | chr19:349976-350147 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 273-561 |
| Cow position: | chr19:4532483-4532795 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 263 |
| Conread position: | 349-561 |
| Cow position: | chr19:172381-172163 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 402-561 |
| Cow position: | chr19:39390623-39390469 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 130, 19 |
| Conread position: | 403-552 |
| Cow position: | chr19:32193692-32193540 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 112 |
| Conread position: | 403-561 |
| Cow position: | chr19:4385596-4385437 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 112 |
| Conread position: | 403-561 |
| Cow position: | chr19:10672192-10672354 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 403-561 |
| Cow position: | chr19:33873540-33873379 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 403-561 |
| Cow position: | chr19:55078860-55078698 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 404-562 |
| Cow position: | chr19:38009-37847 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 404-567 |
| Cow position: | chr19:32244797-32244630 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 421-541 |
| Cow position: | chr19:39688627-39688505 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 421-554 |
| Cow position: | chr19:204058-203924 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 421-561 |
| Cow position: | chr19:893516-893661 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 421-561 |
| Cow position: | chr19:28581559-28581702 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 421-562 |
| Cow position: | chr19:34517-34371 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 421-562 |
| Cow position: | chr19:27052672-27052814 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 421-562 |
| Cow position: | chr19:30372379-30372233 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 421-562 |
| Cow position: | chr19:32665627-32665481 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 421-562 |
| Cow position: | chr19:43143813-43143668 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 421-567 |
| Cow position: | chr19:7342165-7342014 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 421-567 |
| Cow position: | chr19:28593376-28593223 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 423-561 |
| Cow position: | chr19:32223345-32223486 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 426-562 |
| Cow position: | chr19:350191-350332 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 426-562 |
| Cow position: | chr19:31341798-31341657 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 426-562 |
| Cow position: | chr19:32237590-32237729 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 426-569 |
| Cow position: | chr19:29209651-29209505 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 103, 87 |
| Conread position: | 426-570 |
| Cow position: | chr19:39546720-39546573 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 89 |
| Conread position: | 441-557 |
| Cow position: | chr19:170665-170782 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 442-564 |
| Cow position: | chr19:4252285-4252409 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 28 |
Show alignments to all cow chromosomes.