Cow genome map
| Conread name: | Pig2-117P05 |
| Conread position: | 1-329 |
| Cow position: | chr20:18315087-18315411 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 23 |
| Conread position: | 85-426 |
| Cow position: | chr20:8993187-8993541 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 10, 162 |
| Conread position: | 123-425 |
| Cow position: | chr20:31378479-31378780 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 22, 156 |
| Conread position: | 129-426 |
| Cow position: | chr20:10856632-10856928 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 48, 156 |
| Conread position: | 129-426 |
| Cow position: | chr20:13434559-13434848 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 164, 58 |
| Conread position: | 129-530 |
| Cow position: | chr20:22717337-22717751 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 49, 106 |
| Conread position: | 160-414 |
| Cow position: | chr20:9953617-9953869 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 87 |
| Conread position: | 191-408 |
| Cow position: | chr20:15947036-15947256 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 145 |
| Conread position: | 191-424 |
| Cow position: | chr20:5484532-5484295 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 30, 6 |
| Conread position: | 191-426 |
| Cow position: | chr20:13679718-13679953 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 102, 218 |
| Conread position: | 192-429 |
| Cow position: | chr20:823112-822868 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 197-429 |
| Cow position: | chr20:19438278-19438050 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 211-408 |
| Cow position: | chr20:3684168-3684366 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 212-338 |
| Cow position: | chr20:19495304-19495175 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 212-384 |
| Cow position: | chr20:21393912-21393738 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 212-424 |
| Cow position: | chr20:15065084-15064872 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 80, 101 |
| Conread position: | 212-429 |
| Cow position: | chr20:3251816-3252033 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 80, 106 |
| Conread position: | 212-569 |
| Cow position: | chr20:10845803-10846176 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 315 |
| Conread position: | 213-429 |
| Cow position: | chr20:5560397-5560614 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 213-429 |
| Cow position: | chr20:25961421-25961204 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 214-429 |
| Cow position: | chr20:3033379-3033162 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 219-426 |
| Cow position: | chr20:7116157-7116365 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 219-426 |
| Cow position: | chr20:8313127-8313337 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 225-426 |
| Cow position: | chr20:3271010-3270808 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 60, 82 |
| Conread position: | 225-429 |
| Cow position: | chr20:24614841-24614635 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 226-426 |
| Cow position: | chr20:5535242-5535042 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 67, 172 |
| Conread position: | 226-426 |
| Cow position: | chr20:8003921-8004121 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 67, 174 |
| Conread position: | 226-426 |
| Cow position: | chr20:13763209-13763007 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 226-426 |
| Cow position: | chr20:23469361-23469555 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 67, 119 |
| Conread position: | 226-426 |
| Cow position: | chr20:23799190-23798986 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 67, 42 |
| Conread position: | 226-426 |
| Cow position: | chr20:27869502-27869301 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 226-426 |
| Cow position: | chr20:28161075-28160880 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 115 |
| Conread position: | 227-425 |
| Cow position: | chr20:35119873-35119675 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 237-426 |
| Cow position: | chr20:12438467-12438657 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 237-426 |
| Cow position: | chr20:15292304-15292114 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 237-426 |
| Cow position: | chr20:21914621-21914431 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 237-426 |
| Cow position: | chr20:29948793-29948603 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 238-426 |
| Cow position: | chr20:30684613-30684439 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 84 |
| Conread position: | 239-424 |
| Cow position: | chr20:28565304-28565490 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 239-426 |
| Cow position: | chr20:25850699-25850887 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 244-426 |
| Cow position: | chr20:15097590-15097774 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 379-561 |
| Cow position: | chr20:13679962-13680147 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 42 |
| Conread position: | 403-557 |
| Cow position: | chr20:10102488-10102634 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 126, 18 |
| Conread position: | 403-561 |
| Cow position: | chr20:12438690-12438852 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 403-561 |
| Cow position: | chr20:13762973-13762812 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 54, 18 |
| Conread position: | 403-561 |
| Cow position: | chr20:15097807-15097969 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 403-561 |
| Cow position: | chr20:28160847-28160691 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 126, 19 |
| Conread position: | 403-562 |
| Cow position: | chr20:3270775-3270616 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 403-562 |
| Cow position: | chr20:9953914-9954075 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 403-562 |
| Cow position: | chr20:35973338-35973501 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 403-567 |
| Cow position: | chr20:5560644-5560812 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 403-567 |
| Cow position: | chr20:11679039-11679207 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 403-567 |
| Cow position: | chr20:25961174-25961006 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 404-567 |
| Cow position: | chr20:822837-822670 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 421-561 |
| Cow position: | chr20:8004171-8004316 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 421-561 |
| Cow position: | chr20:15292064-15291927 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 115, 47 |
| Conread position: | 421-561 |
| Cow position: | chr20:23798936-23798791 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 421-561 |
| Cow position: | chr20:27869251-27869106 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 421-561 |
| Cow position: | chr20:28565542-28565687 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 421-561 |
| Cow position: | chr20:30684389-30684248 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 421-562 |
| Cow position: | chr20:3033115-3032972 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 90 |
| Conread position: | 421-562 |
| Cow position: | chr20:5484243-5484100 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 421-562 |
| Cow position: | chr20:18315530-18315677 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 425-554 |
| Cow position: | chr20:21393614-21393484 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 87 |
| Conread position: | 426-561 |
| Cow position: | chr20:15947344-15947483 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 427-561 |
| Cow position: | chr20:24614585-24614448 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 88 |
| Conread position: | 440-567 |
| Cow position: | chr20:19192093-19192225 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 12, 75 |
Show alignments to all cow chromosomes.