Cow genome map

Conread name: Pig2-117P05

Conread position: 1-313
Cow position: chr21:29423-29105 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 31

Conread position: 1-396
Cow position: chr21:359691-359287 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 23

Conread position: 1-426
Cow position: chr21:2540758-2541191 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 23

Conread position: 2-426
Cow position: chr21:4184158-4183748 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 20

Conread position: 5-373
Cow position: chr21:9870390-9870022 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 13

Conread position: 5-427
Cow position: chr21:9892266-9891814 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 219

Conread position: 24-411
Cow position: chr21:30226648-30226257 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 74

Conread position: 30-426
Cow position: chr21:23812508-23812098 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 207

Conread position: 129-411
Cow position: chr21:21914808-21914524 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 196
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 33, 98

Conread position: 130-488
Cow position: chr21:21517646-21517301 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 231
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 50, 61

Conread position: 152-424
Cow position: chr21:36715127-36714854 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 191
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 35, 159

Conread position: 157-429
Cow position: chr21:23861271-23861007 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 9

Conread position: 166-429
Cow position: chr21:2511144-2510871 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 191-426
Cow position: chr21:7267074-7267322 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 7

Conread position: 192-425
Cow position: chr21:2502350-2502116 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 155

Conread position: 192-428
Cow position: chr21:4087260-4087023 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 40, 45

Conread position: 192-429
Cow position: chr21:8677903-8678140 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 97
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 192-429
Cow position: chr21:11506060-11505807 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 182
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 52

Conread position: 198-426
Cow position: chr21:2416671-2416451 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 15, 69

Conread position: 200-425
Cow position: chr21:4589541-4589767 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 93, 0

Conread position: 211-393
Cow position: chr21:3615750-3615568 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 84, 99

Conread position: 211-429
Cow position: chr21:26638022-26638245 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 31

Conread position: 211-429
Cow position: chr21:39425506-39425283 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 9, 31

Conread position: 212-387
Cow position: chr21:34258551-34258728 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 81, 0

Conread position: 212-423
Cow position: chr21:2883311-2883522 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 10, 24

Conread position: 212-426
Cow position: chr21:146360-146146 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 81, 116

Conread position: 212-426
Cow position: chr21:1291753-1291968 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 212-426
Cow position: chr21:4457264-4457049 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 81, 0

Conread position: 212-427
Cow position: chr21:2529690-2529905 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 82, 105

Conread position: 212-429
Cow position: chr21:3797933-3798151 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 212-429
Cow position: chr21:4077277-4077059 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 8, 99

Conread position: 212-429
Cow position: chr21:13123568-13123784 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 162

Conread position: 212-429
Cow position: chr21:34293453-34293236 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 212-429
Cow position: chr21:35596804-35596588 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 20, 28

Conread position: 213-429
Cow position: chr21:4091086-4090869 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 25

Conread position: 213-429
Cow position: chr21:26650478-26650261 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 80, 0

Conread position: 213-429
Cow position: chr21:46916025-46915808 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 19, 25

Conread position: 219-356
Cow position: chr21:2716286-2716425 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 219-427
Cow position: chr21:18819998-18820206 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 87

Conread position: 225-424
Cow position: chr21:2788568-2788767 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 67, 82

Conread position: 226-372
Cow position: chr21:2674188-2674334 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 63, 97

Conread position: 226-426
Cow position: chr21:10567092-10566896 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 67, 97

Conread position: 226-426
Cow position: chr21:30562226-30562025 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 67, 0

Conread position: 226-426
Cow position: chr21:35144180-35143991 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 226-429
Cow position: chr21:6339990-6339786 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 67, 0

Conread position: 226-429
Cow position: chr21:11453232-11453436 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 67, 0

Conread position: 227-426
Cow position: chr21:12055578-12055778 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 160
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 5, 11

Conread position: 227-426
Cow position: chr21:20744346-20744542 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 137
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 51

Conread position: 227-429
Cow position: chr21:37045333-37045130 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 67, 0

Conread position: 236-387
Cow position: chr21:33251920-33251768 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 85

Conread position: 237-379
Cow position: chr21:27282798-27282655 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 237-419
Cow position: chr21:48116514-48116331 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 237-426
Cow position: chr21:1191576-1191386 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 56, 0

Conread position: 237-426
Cow position: chr21:3779179-3778989 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 56, 0

Conread position: 237-426
Cow position: chr21:30599513-30599697 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 56, 131

Conread position: 237-426
Cow position: chr21:31559243-31559432 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 56, 146

Conread position: 237-426
Cow position: chr21:40271264-40271454 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 56, 0

Conread position: 239-426
Cow position: chr21:10850490-10850303 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 54, 80

Conread position: 253-429
Cow position: chr21:47948505-47948329 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 40, 81

Conread position: 262-429
Cow position: chr21:216677-216509 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 31, 119

Conread position: 267-430
Cow position: chr21:3426868-3426704 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 272-429
Cow position: chr21:47939849-47939696 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 73

Conread position: 293-426
Cow position: chr21:4222337-4222464 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 392-567
Cow position: chr21:27708965-27708784 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 16, 30

Conread position: 403-554
Cow position: chr21:10566863-10566711 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 48, 18

Conread position: 403-561
Cow position: chr21:2883558-2883720 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 55, 18

Conread position: 403-561
Cow position: chr21:10850270-10850108 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 18

Conread position: 403-562
Cow position: chr21:6339756-6339594 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 49, 18

Conread position: 403-562
Cow position: chr21:30561992-30561829 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 18

Conread position: 403-567
Cow position: chr21:8678170-8678338 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 49, 18

Conread position: 403-567
Cow position: chr21:46915778-46915609 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 16

Conread position: 404-552
Cow position: chr21:12055812-12055961 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 17

Conread position: 404-560
Cow position: chr21:11505776-11505616 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 48, 17

Conread position: 404-562
Cow position: chr21:7267356-7267514 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 42, 18

Conread position: 418-561
Cow position: chr21:359192-359045 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 41, 97

Conread position: 421-531
Cow position: chr21:40271504-40271615 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 93

Conread position: 421-552
Cow position: chr21:4090822-4090690 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 94

Conread position: 421-554
Cow position: chr21:4183698-4183561 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 95

Conread position: 421-561
Cow position: chr21:3615465-3615321 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 120
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 36, 94

Conread position: 421-561
Cow position: chr21:3778939-3778794 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 30, 94

Conread position: 421-561
Cow position: chr21:23812049-23811905 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 36, 93

Conread position: 421-561
Cow position: chr21:31559482-31559626 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 108, 0

Conread position: 421-561
Cow position: chr21:33251565-33251420 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 29, 94

Conread position: 421-562
Cow position: chr21:2769288-2769434 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 32, 94

Conread position: 421-562
Cow position: chr21:4589818-4589963 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 32, 95

Conread position: 421-562
Cow position: chr21:26638292-26638435 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 31, 94

Conread position: 421-567
Cow position: chr21:26818848-26818999 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 31, 94

Conread position: 421-567
Cow position: chr21:47948282-47948131 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 95

Conread position: 422-554
Cow position: chr21:2416400-2416273 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 112
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 110, 33

Conread position: 425-562
Cow position: chr21:27282556-27282414 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 90

Conread position: 425-567
Cow position: chr21:2529957-2530105 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 7, 90

Conread position: 426-562
Cow position: chr21:2716515-2716654 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 31, 89

Conread position: 426-562
Cow position: chr21:2788825-2788964 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 119
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 102, 87

Conread position: 426-562
Cow position: chr21:3426653-3426512 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 89

Conread position: 426-562
Cow position: chr21:4222519-4222660 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 32, 89

Conread position: 426-562
Cow position: chr21:34293184-34293045 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 119
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 26, 88

Conread position: 426-562
Cow position: chr21:35596536-35596395 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 27, 89

Conread position: 426-567
Cow position: chr21:11453488-11453634 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 89

Conread position: 426-567
Cow position: chr21:37045081-37044935 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 26, 89

Conread position: 427-562
Cow position: chr21:1292013-1292150 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 34, 68

Conread position: 430-562
Cow position: chr21:34259062-34259192 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 61, 25

Show alignments to all cow chromosomes.