Cow genome map
| Conread name: | Pig2-117P05 |
| Conread position: | 44-426 |
| Cow position: | chr23:29474116-29474507 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 74-314 |
| Cow position: | chr23:1402472-1402719 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 220 |
| Conread position: | 91-425 |
| Cow position: | chr23:4752373-4752045 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 110-426 |
| Cow position: | chr23:1327106-1327424 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 123-361 |
| Cow position: | chr23:31650560-31650795 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 123-424 |
| Cow position: | chr23:38578630-38578326 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 113 |
| Conread position: | 123-561 |
| Cow position: | chr23:22875331-22875778 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 129 |
| Conread position: | 129-426 |
| Cow position: | chr23:19332064-19332357 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 79, 57 |
| Conread position: | 130-426 |
| Cow position: | chr23:16615651-16615946 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 149 |
| Conread position: | 177-429 |
| Cow position: | chr23:4360138-4359877 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 11, 69 |
| Conread position: | 183-425 |
| Cow position: | chr23:25683770-25684010 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 68 |
| Conread position: | 189-430 |
| Cow position: | chr23:8980032-8980271 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 176 |
| Conread position: | 191-419 |
| Cow position: | chr23:14965466-14965695 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 191-426 |
| Cow position: | chr23:27399789-27399554 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 191-429 |
| Cow position: | chr23:2312948-2313191 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 191-429 |
| Cow position: | chr23:4434743-4434506 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 191-429 |
| Cow position: | chr23:5778802-5779040 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 102, 10 |
| Conread position: | 192-429 |
| Cow position: | chr23:19950295-19950536 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 197-429 |
| Cow position: | chr23:20302490-20302260 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 200-426 |
| Cow position: | chr23:967072-967295 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 168 |
| Conread position: | 211-426 |
| Cow position: | chr23:7273897-7273686 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 182 |
| Conread position: | 212-414 |
| Cow position: | chr23:29452053-29452258 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 212-416 |
| Cow position: | chr23:988383-988586 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 81, 140 |
| Conread position: | 212-425 |
| Cow position: | chr23:4277220-4277005 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 212-425 |
| Cow position: | chr23:31591537-31591752 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 212-426 |
| Cow position: | chr23:2574800-2574586 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 81, 93 |
| Conread position: | 212-426 |
| Cow position: | chr23:15219626-15219842 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 212-445 |
| Cow position: | chr23:15525875-15525640 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 212-461 |
| Cow position: | chr23:4510342-4510091 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 143 |
| Conread position: | 212-562 |
| Cow position: | chr23:2765188-2765524 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 216 |
| Conread position: | 213-429 |
| Cow position: | chr23:31447079-31446862 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 219-426 |
| Cow position: | chr23:28913652-28913447 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 226-426 |
| Cow position: | chr23:3881454-3881655 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 226-426 |
| Cow position: | chr23:4640373-4640574 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 226-426 |
| Cow position: | chr23:19489793-19489592 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 226-426 |
| Cow position: | chr23:30636050-30636251 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 164 |
| Conread position: | 226-427 |
| Cow position: | chr23:2716639-2716437 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 226-429 |
| Cow position: | chr23:16616595-16616802 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 226-429 |
| Cow position: | chr23:28217541-28217337 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 226-445 |
| Cow position: | chr23:4888924-4888705 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 67, 134 |
| Conread position: | 226-445 |
| Cow position: | chr23:15177322-15177105 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 234-426 |
| Cow position: | chr23:2757837-2757644 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 234-426 |
| Cow position: | chr23:20155972-20156167 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 235-429 |
| Cow position: | chr23:14974321-14974514 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 58, 123 |
| Conread position: | 237-425 |
| Cow position: | chr23:31594996-31595185 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 237-426 |
| Cow position: | chr23:2026879-2027069 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 237-426 |
| Cow position: | chr23:36031133-36031323 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 237-429 |
| Cow position: | chr23:2795328-2795518 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 256-424 |
| Cow position: | chr23:2782215-2782380 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 256-429 |
| Cow position: | chr23:2523976-2524150 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 258-424 |
| Cow position: | chr23:22147031-22147198 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 258-429 |
| Cow position: | chr23:5874563-5874727 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 272-429 |
| Cow position: | chr23:3013851-3013693 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 301-426 |
| Cow position: | chr23:4816250-4816125 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 396-554 |
| Cow position: | chr23:4359855-4359694 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 396-567 |
| Cow position: | chr23:1025037-1025211 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 403-542 |
| Cow position: | chr23:22147233-22147374 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 403-554 |
| Cow position: | chr23:36031356-36031507 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 403-560 |
| Cow position: | chr23:31446832-31446671 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 403-561 |
| Cow position: | chr23:3881683-3881843 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 129, 18 |
| Conread position: | 403-561 |
| Cow position: | chr23:4888692-4888536 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 129, 18 |
| Conread position: | 403-561 |
| Cow position: | chr23:15219875-15220042 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 109, 18 |
| Conread position: | 403-561 |
| Cow position: | chr23:15525627-15525466 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 403-561 |
| Cow position: | chr23:28913428-28913269 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 403-561 |
| Cow position: | chr23:30636284-30636446 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 406-560 |
| Cow position: | chr23:19950569-19950727 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 421-560 |
| Cow position: | chr23:2313237-2313381 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 421-561 |
| Cow position: | chr23:2027119-2027263 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 421-561 |
| Cow position: | chr23:3013646-3013501 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 421-561 |
| Cow position: | chr23:15177075-15176930 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 421-561 |
| Cow position: | chr23:16616849-16616993 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 421-562 |
| Cow position: | chr23:2795565-2795707 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 421-562 |
| Cow position: | chr23:5874774-5874920 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 421-562 |
| Cow position: | chr23:14974561-14974707 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 421-562 |
| Cow position: | chr23:19489542-19489392 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 421-567 |
| Cow position: | chr23:4434460-4434314 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 79 |
| Conread position: | 422-567 |
| Cow position: | chr23:20302214-20302064 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 426-561 |
| Cow position: | chr23:5779091-5779228 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 32, 89 |
| Conread position: | 426-562 |
| Cow position: | chr23:2524202-2524341 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 426-562 |
| Cow position: | chr23:4276950-4276809 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 427-561 |
| Cow position: | chr23:4510093-4509957 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 88 |
| Conread position: | 429-561 |
| Cow position: | chr23:4640632-4640769 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 432-561 |
| Cow position: | chr23:20156246-20156378 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 100, 81 |
Show alignments to all cow chromosomes.