Cow genome map
| Conread name: | Pig2-117P05 |
| Conread position: | 1-426 |
| Cow position: | chr24:16648750-16649182 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 1-426 |
| Cow position: | chr24:36559529-36559950 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 24-426 |
| Cow position: | chr24:12797220-12797632 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 220 |
| Conread position: | 123-426 |
| Cow position: | chr24:1447996-1447692 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 113 |
| Conread position: | 123-562 |
| Cow position: | chr24:14333483-14333041 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 262 |
| Conread position: | 126-426 |
| Cow position: | chr24:36708277-36707983 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 86 |
| Conread position: | 128-424 |
| Cow position: | chr24:35841187-35841485 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 50, 208 |
| Conread position: | 129-426 |
| Cow position: | chr24:6537965-6537676 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 88, 31 |
| Conread position: | 129-426 |
| Cow position: | chr24:12568663-12568370 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 129-426 |
| Cow position: | chr24:17303185-17303477 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 240, 28 |
| Conread position: | 129-429 |
| Cow position: | chr24:7091165-7091464 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 49, 84 |
| Conread position: | 130-371 |
| Cow position: | chr24:38637039-38636796 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 101 |
| Conread position: | 141-425 |
| Cow position: | chr24:8152583-8152868 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 41, 87 |
| Conread position: | 146-385 |
| Cow position: | chr24:16376934-16376701 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 147, 39 |
| Conread position: | 155-401 |
| Cow position: | chr24:12287987-12288229 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 158-415 |
| Cow position: | chr24:6352584-6352332 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 191-426 |
| Cow position: | chr24:9091913-9092141 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 102, 130 |
| Conread position: | 191-426 |
| Cow position: | chr24:14384243-14384478 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 102, 175 |
| Conread position: | 191-426 |
| Cow position: | chr24:35838244-35838480 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 14, 132 |
| Conread position: | 195-426 |
| Cow position: | chr24:6336048-6335826 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 197-411 |
| Cow position: | chr24:12113676-12113896 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 128 |
| Conread position: | 211-334 |
| Cow position: | chr24:43814120-43813992 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 211-426 |
| Cow position: | chr24:16084303-16084524 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 211-429 |
| Cow position: | chr24:6660246-6660476 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 212-424 |
| Cow position: | chr24:33933717-33933504 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 212-426 |
| Cow position: | chr24:6145719-6145505 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 80, 157 |
| Conread position: | 212-426 |
| Cow position: | chr24:12086549-12086334 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 213-423 |
| Cow position: | chr24:14585426-14585215 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 213-426 |
| Cow position: | chr24:17696628-17696837 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 80, 85 |
| Conread position: | 213-426 |
| Cow position: | chr24:40549224-40549010 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 213-429 |
| Cow position: | chr24:6434592-6434374 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 213-429 |
| Cow position: | chr24:8030501-8030284 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 214-412 |
| Cow position: | chr24:37217348-37217150 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 216-430 |
| Cow position: | chr24:12237400-12237186 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 77, 18 |
| Conread position: | 218-407 |
| Cow position: | chr24:7061734-7061544 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 218-429 |
| Cow position: | chr24:6084362-6084150 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 219-429 |
| Cow position: | chr24:9188387-9188598 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 6, 20 |
| Conread position: | 226-404 |
| Cow position: | chr24:5992892-5993071 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 226-426 |
| Cow position: | chr24:148282-148483 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 226-426 |
| Cow position: | chr24:4415192-4415393 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 67, 161 |
| Conread position: | 226-426 |
| Cow position: | chr24:12335438-12335638 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 67, 36 |
| Conread position: | 226-426 |
| Cow position: | chr24:29187620-29187419 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 226-429 |
| Cow position: | chr24:12484980-12485184 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 226-429 |
| Cow position: | chr24:22793509-22793306 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 226-429 |
| Cow position: | chr24:33739003-33739204 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 230-415 |
| Cow position: | chr24:6646035-6645850 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 63, 7 |
| Conread position: | 231-425 |
| Cow position: | chr24:6024767-6024958 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 240-380 |
| Cow position: | chr24:15392017-15392156 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 75 |
| Conread position: | 245-429 |
| Cow position: | chr24:44017864-44017679 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 246-426 |
| Cow position: | chr24:19833702-19833521 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 272-426 |
| Cow position: | chr24:22952427-22952272 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 272-429 |
| Cow position: | chr24:13524395-13524238 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 137 |
| Conread position: | 295-429 |
| Cow position: | chr24:12162140-12162009 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 379-567 |
| Cow position: | chr24:2636246-2636055 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 396-569 |
| Cow position: | chr24:9188620-9188797 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 403-554 |
| Cow position: | chr24:22952239-22952086 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 403-566 |
| Cow position: | chr24:12131383-12131548 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 404-560 |
| Cow position: | chr24:6084119-6083959 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 404-567 |
| Cow position: | chr24:6645515-6645350 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 404-567 |
| Cow position: | chr24:7061202-7061037 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 404-567 |
| Cow position: | chr24:8030253-8030086 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 404-567 |
| Cow position: | chr24:12224367-12224534 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 404-567 |
| Cow position: | chr24:16084558-16084725 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 404-567 |
| Cow position: | chr24:22793275-22793109 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 421-552 |
| Cow position: | chr24:40548964-40548830 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 421-561 |
| Cow position: | chr24:4415443-4415584 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 111, 30 |
| Conread position: | 421-561 |
| Cow position: | chr24:6145446-6145302 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 421-561 |
| Cow position: | chr24:12288643-12288785 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 421-562 |
| Cow position: | chr24:13531450-13531596 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 421-562 |
| Cow position: | chr24:14585179-14585034 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 94 |
| Conread position: | 421-562 |
| Cow position: | chr24:33933452-33933306 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 421-562 |
| Cow position: | chr24:37217091-37216944 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 421-564 |
| Cow position: | chr24:19833467-19833319 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 421-567 |
| Cow position: | chr24:6025009-6025160 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 421-567 |
| Cow position: | chr24:12113954-12114104 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 95 |
| Conread position: | 421-567 |
| Cow position: | chr24:12485231-12485382 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 422-554 |
| Cow position: | chr24:14384528-14384663 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 93 |
| Conread position: | 422-562 |
| Cow position: | chr24:9092188-9092333 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 92 |
| Conread position: | 425-554 |
| Cow position: | chr24:6660526-6660658 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 90 |
| Conread position: | 425-561 |
| Cow position: | chr24:12797686-12797822 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 432-562 |
| Cow position: | chr24:15392235-15392369 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 82 |
Show alignments to all cow chromosomes.