Cow genome map

Conread name: Pig2-117P05

Conread position: 1-419
Cow position: chr4:46664397-46663982 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 19

Conread position: 1-426
Cow position: chr4:21337790-21338221 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 198

Conread position: 2-426
Cow position: chr4:28831240-28830811 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 22

Conread position: 29-241
Cow position: chr4:54955937-54955717 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 54, 15

Conread position: 30-429
Cow position: chr4:60264376-60264788 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 38

Conread position: 32-426
Cow position: chr4:34184716-34185088 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 76

Conread position: 44-426
Cow position: chr4:1463761-1464142 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 109

Conread position: 123-425
Cow position: chr4:8598071-8598373 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 96

Conread position: 124-483
Cow position: chr4:11385041-11384687 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 47

Conread position: 129-419
Cow position: chr4:11393264-11393551 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 38, 152

Conread position: 144-426
Cow position: chr4:17530366-17530645 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 185
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 88, 47

Conread position: 146-418
Cow position: chr4:47518369-47518101 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 183
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 46

Conread position: 176-562
Cow position: chr4:51043899-51044304 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 282
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 53, 166

Conread position: 191-426
Cow position: chr4:57979646-57979411 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 192-386
Cow position: chr4:3125819-3125618 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 17, 52

Conread position: 192-426
Cow position: chr4:100910-101150 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 17, 51

Conread position: 192-429
Cow position: chr4:6268608-6268848 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 185
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 17, 47

Conread position: 192-429
Cow position: chr4:30307435-30307679 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 17, 52

Conread position: 198-426
Cow position: chr4:13492585-13492359 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 95, 14

Conread position: 211-356
Cow position: chr4:18190408-18190259 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 31

Conread position: 211-375
Cow position: chr4:41954477-41954307 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 9, 33

Conread position: 211-427
Cow position: chr4:12241219-12241436 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 82, 0

Conread position: 211-429
Cow position: chr4:1930621-1930844 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 9, 0

Conread position: 211-429
Cow position: chr4:18424522-18424745 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 174
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 9, 31

Conread position: 211-459
Cow position: chr4:41958132-41957879 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 148
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 9, 33

Conread position: 212-410
Cow position: chr4:10408671-10408476 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 79, 140

Conread position: 212-426
Cow position: chr4:11618848-11618636 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 83, 39

Conread position: 212-426
Cow position: chr4:18516894-18516679 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 81, 0

Conread position: 212-426
Cow position: chr4:33493822-33493591 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 147, 0

Conread position: 212-429
Cow position: chr4:61256889-61256676 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 81, 138

Conread position: 212-429
Cow position: chr4:66178990-66179208 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 212-429
Cow position: chr4:66925995-66925779 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 119

Conread position: 213-429
Cow position: chr4:602990-602773 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 19, 25

Conread position: 213-429
Cow position: chr4:9354774-9354991 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 80, 0

Conread position: 213-429
Cow position: chr4:9587260-9587043 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 80, 0

Conread position: 213-429
Cow position: chr4:13548026-13547809 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 168
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 25

Conread position: 213-429
Cow position: chr4:65223537-65223754 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 80, 0

Conread position: 219-429
Cow position: chr4:158507-158295 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 6, 20

Conread position: 219-429
Cow position: chr4:16056593-16056382 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 6, 22

Conread position: 226-392
Cow position: chr4:43319663-43319829 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 67, 85

Conread position: 226-416
Cow position: chr4:4416066-4415875 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 6, 12

Conread position: 226-425
Cow position: chr4:47717623-47717822 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 32, 53

Conread position: 226-426
Cow position: chr4:6490381-6490582 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 67, 0

Conread position: 226-426
Cow position: chr4:12587282-12587081 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 67, 0

Conread position: 226-426
Cow position: chr4:24445223-24445418 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 66, 0

Conread position: 226-426
Cow position: chr4:25599635-25599836 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 70, 0

Conread position: 226-426
Cow position: chr4:26886881-26887079 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 226-426
Cow position: chr4:36896351-36896156 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 84

Conread position: 226-426
Cow position: chr4:41331422-41331220 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 66, 0

Conread position: 226-426
Cow position: chr4:43881092-43880892 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 67, 141

Conread position: 226-426
Cow position: chr4:47764187-47764387 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 157
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 6, 12

Conread position: 226-427
Cow position: chr4:44725067-44724865 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 67, 0

Conread position: 226-429
Cow position: chr4:5880149-5879946 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 6, 12

Conread position: 226-429
Cow position: chr4:27333419-27333224 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 67, 143

Conread position: 226-429
Cow position: chr4:32212151-32211947 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 161
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 6, 12

Conread position: 236-426
Cow position: chr4:17926280-17926472 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 9, 0

Conread position: 236-426
Cow position: chr4:41119987-41119796 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 237-426
Cow position: chr4:355882-355693 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 56, 124

Conread position: 237-426
Cow position: chr4:16359856-16359666 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 56, 0

Conread position: 237-426
Cow position: chr4:33073137-33073327 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 56, 120

Conread position: 237-426
Cow position: chr4:48026369-48026180 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 239-426
Cow position: chr4:3961562-3961374 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 54, 0

Conread position: 239-426
Cow position: chr4:45049328-45049515 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 258-422
Cow position: chr4:39271985-39272150 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 113, 0

Conread position: 267-426
Cow position: chr4:4906089-4905929 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 26, 0

Conread position: 293-426
Cow position: chr4:528909-528776 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 396-567
Cow position: chr4:602751-602576 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 56, 21

Conread position: 403-561
Cow position: chr4:12241469-12241631 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 48, 19

Conread position: 403-561
Cow position: chr4:18516646-18516484 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 47, 18

Conread position: 403-561
Cow position: chr4:41119763-41119600 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 18

Conread position: 403-561
Cow position: chr4:41331187-41331029 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 129, 18

Conread position: 403-561
Cow position: chr4:43319886-43320048 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 48, 18

Conread position: 403-561
Cow position: chr4:43880859-43880697 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 48, 18

Conread position: 403-561
Cow position: chr4:45049548-45049710 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 54, 18

Conread position: 403-562
Cow position: chr4:355660-355497 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 134
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 48, 18

Conread position: 403-562
Cow position: chr4:47717856-47718020 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 23

Conread position: 403-562
Cow position: chr4:60264818-60264973 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 127, 30

Conread position: 403-567
Cow position: chr4:65223784-65223952 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 49, 18

Conread position: 404-567
Cow position: chr4:158264-158097 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 57, 17

Conread position: 404-567
Cow position: chr4:27333193-27333025 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 48, 17

Conread position: 404-567
Cow position: chr4:47764421-47764588 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 26

Conread position: 421-554
Cow position: chr4:46663926-46663794 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 115
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 36, 62

Conread position: 421-557
Cow position: chr4:1930890-1931029 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 94

Conread position: 421-557
Cow position: chr4:48026130-48025993 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 74

Conread position: 421-561
Cow position: chr4:1464192-1464339 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 421-561
Cow position: chr4:13492309-13492165 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 94

Conread position: 421-561
Cow position: chr4:32211900-32211755 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 31, 93

Conread position: 421-561
Cow position: chr4:36896106-36895962 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 120
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 30, 12

Conread position: 421-561
Cow position: chr4:66179255-66179399 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 36, 94

Conread position: 421-562
Cow position: chr4:30307726-30307864 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 108, 30

Conread position: 421-562
Cow position: chr4:44724816-44724670 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 93

Conread position: 421-567
Cow position: chr4:528726-528575 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 31, 94

Conread position: 421-567
Cow position: chr4:13547762-13547610 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 31, 95

Conread position: 421-567
Cow position: chr4:16056335-16056186 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 108, 92

Conread position: 421-568
Cow position: chr4:57979364-57979216 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 94

Conread position: 422-567
Cow position: chr4:5879902-5879753 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 76

Conread position: 426-562
Cow position: chr4:11618585-11618448 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 117
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 89

Conread position: 426-562
Cow position: chr4:66925727-66925592 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 103, 57

Conread position: 452-567
Cow position: chr4:23114476-23114594 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 77, 61

Show alignments to all cow chromosomes.